View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1683_low_1 (Length: 611)
Name: NF1683_low_1
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1683_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 222 - 596
Target Start/End: Original strand, 402171 - 402545
Alignment:
| Q |
222 |
gcgttttgtagtcagcttgtataattggtgtaacttatcaagatattcggcttttgccatattattaatagtatcatctgcacccatgttaacagtctga |
321 |
Q |
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| T |
402171 |
gcgttttgtagtcagcttgtataattggtgtaacttatcaagatattcagcttttgccatattattaatagtatcatctgcacccatgttaacagtctga |
402270 |
T |
|
| Q |
322 |
tccttgggctcaaataagagttggcgagaaatctgtaaggaaataaaaattcatggttctcctaaccttggtcgagagttgagacgatgacttgattgat |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
402271 |
tccttgggctcaaataagagttggcgagaaatctgtaaggaaataaaaatacatggttctcctaaccttggttgagagttgagacgatgacttgattgat |
402370 |
T |
|
| Q |
422 |
atcagttttgacaagatcaagagaagacgaatatgcgcgtcttaaaatactcannnnnnnnnnnnnnnnnnnnnatcaagtgacactaatcaaatcactc |
521 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
402371 |
atcagttttgacaaaatcaagagaagacgaatatgcgcgtcttaaaatactcattttcattttttcttgtttttatcaagtgacactaatcaaatcactc |
402470 |
T |
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| Q |
522 |
ttccaaccgttagagttttagttaatttgcaagtaatgcagacagtaaaacaaaatagttaactttgtaagtaat |
596 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
402471 |
ttccaaccgttagagttttagttaatttgcaagtaatgtagacagtaaaacaaaatagttaactttgtaagtaat |
402545 |
T |
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