View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1683_low_5 (Length: 226)
Name: NF1683_low_5
Description: NF1683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1683_low_5 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 22742588 - 22742363
Alignment:
| Q |
1 |
acttcctcagaaatccaaggtttgtggatcttttgcttcaatgcactgttaattcatgatgccaagctatataattccatttgccttttgatgtgattgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22742588 |
acttcctcagaaatccaaggtttgtggatcttttgcttcaatccactgttaattcatggtgccaagctatataattccatttgccttttgatgtgattgg |
22742489 |
T |
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| Q |
101 |
atctagttatttaagtgtatctactggtataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgacagattaataagtagtttccagg |
200 |
Q |
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| T |
22742488 |
atctagttatttaagtgtatctactggtataagaacttgtgaggctgcttaggtgagcttatggaaacaacttatgacagattaataagtagtttccagg |
22742389 |
T |
|
| Q |
201 |
ataacttatgaaaatagcttatagct |
226 |
Q |
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||||||||| |||||||||||||||| |
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| T |
22742388 |
ataacttataaaaatagcttatagct |
22742363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 32917307 - 32917263
Alignment:
| Q |
135 |
acttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
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| T |
32917307 |
acttgtgagactgtttgggagagcttatggaaacaacttatgaca |
32917263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 5759507 - 5759569
Alignment:
| Q |
107 |
ttatttaagtgtatctactggtataagaacttgtgaggctgcttaggagagcttatggaaaca |
169 |
Q |
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| T |
5759507 |
ttatttgagtttatctattggtataagtacttgtgagactgtttgggagagcttatggaaaca |
5759569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 9996854 - 9996804
Alignment:
| Q |
129 |
ataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
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||||| ||||||||| |||||| ||||||||||| |||||||| ||||||| |
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| T |
9996854 |
ataagtacttgtgagactgcttgggagagcttatagaaacaacttatgaca |
9996804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 179
Target Start/End: Complemental strand, 25609912 - 25609862
Alignment:
| Q |
129 |
ataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
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||||||||||||||| |||||| | | |||||||||||||||| ||||||| |
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| T |
25609912 |
ataagaacttgtgagactgcttggaatagcttatggaaacaacttatgaca |
25609862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 1431940 - 1431997
Alignment:
| Q |
122 |
tactggtataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
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|||||| ||||| ||||||||| ||| ||||||||||||||||||||| | ||||||| |
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| T |
1431940 |
tactggcataagcacttgtgagactgtttaggagagcttatggaaacatcatatgaca |
1431997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 41040303 - 41040231
Alignment:
| Q |
107 |
ttatttaagtgtatctactggtataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
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| T |
41040303 |
ttatttgagtttatctactgatataagtatttgtgaggctctttagaagagcttatggaaacagcttatgaca |
41040231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 30191073 - 30191145
Alignment:
| Q |
107 |
ttatttaagtgtatctactggtataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
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|||||| ||| |||||| ||| ||||| |||||| || ||| || |||||||||||||||||||| ||||||| |
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| T |
30191073 |
ttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttatgaca |
30191145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 24326158 - 24326107
Alignment:
| Q |
118 |
tatctactggtataagaacttgtgaggctgcttaggagagcttatggaaaca |
169 |
Q |
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|||||||||| ||||| ||||||||| ||| || |||||||||||||||||| |
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| T |
24326158 |
tatctactggcataagcacttgtgagactgtttgggagagcttatggaaaca |
24326107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 42764293 - 42764264
Alignment:
| Q |
197 |
caggataacttatgaaaatagcttatagct |
226 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
42764293 |
caggataacttatgaaaatagcttatagct |
42764264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 44865509 - 44865554
Alignment:
| Q |
118 |
tatctactggtataagaacttgtgaggctgcttaggagagcttatg |
163 |
Q |
| |
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|||||||||||||||| |||||| | ||||||||||||||||||| |
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| T |
44865509 |
tatctactggtataagcacttgtaaaactgcttaggagagcttatg |
44865554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 6950460 - 6950388
Alignment:
| Q |
107 |
ttatttaagtgtatctactggtataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
| |
|
|||||| ||| |||||||||| |||| | ||||||| || || |||||||||||| ||||||||||||||| |
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| T |
6950460 |
ttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttatgtaaacaacctatgaca |
6950388 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 8558770 - 8558734
Alignment:
| Q |
135 |
acttgtgaggctgcttaggagagcttatggaaacaac |
171 |
Q |
| |
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||||||||||||| || |||||||||||||||||||| |
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| T |
8558770 |
acttgtgaggctgtttgggagagcttatggaaacaac |
8558734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 38047822 - 38047883
Alignment:
| Q |
118 |
tatctactggtataagaacttgtgaggctgcttaggagagcttatggaaacaacctatgaca |
179 |
Q |
| |
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|||||||| |||||| ||||||| | ||| || |||||||||||||||||||| ||||||| |
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|
| T |
38047822 |
tatctactattataagtacttgtgtgactgtttgggagagcttatggaaacaacttatgaca |
38047883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 30217200 - 30217160
Alignment:
| Q |
126 |
ggtataagaacttgtgaggctgcttaggagagcttatggaa |
166 |
Q |
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|||||||| ||||||||| ||| |||||||||||||||||| |
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| T |
30217200 |
ggtataagcacttgtgagactgtttaggagagcttatggaa |
30217160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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