View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684-Insertion-3 (Length: 730)
Name: NF1684-Insertion-3
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684-Insertion-3 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 639; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 9 - 730
Target Start/End: Original strand, 33412344 - 33413076
Alignment:
| Q |
9 |
tttgatgattgttatatacattaaccatctattaaacataatcaaccacctatttgaactgtgttaactccttaaaaagttgttgtggaagctgtctaaa |
108 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
33412344 |
tttgatgcttgttatatacattaaccatctattaaacataatcaaccacctatttgaactgtgttaaccccttaaaaagttgttgtggaagttgtctaaa |
33412443 |
T |
|
| Q |
109 |
actagttgtccaaaaaccatttctcaaagtaaaattacatccgtcaagtagagatgaagtactaacacaagcatcggacactacactaacatatcgacac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
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| T |
33412444 |
actagttgtccaaaaaccatttctcaaagtaaaattacatccgtcaagtagagatgaagtactaacacaaacattgtacactacactaacatatcgacag |
33412543 |
T |
|
| Q |
209 |
cataaataattttaattgaatatagtaacatgtgtcggtgtcgggtccgtgtccaacattgacatgtgtcagacattgccttcaatctgaaatgtctgt- |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33412544 |
cataaataattttaattgaatatagtaacatgtgtcggtgtcgggtccgtgtccaacattgacatgtgtcacacattgccttcaatctgaaatgtctgtg |
33412643 |
T |
|
| Q |
308 |
----------aattaagctaggaaatgatcaaaagtatatacctcaatgttggagtggaatcaattctgtaagtgttactccctttcttagcatactctt |
397 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33412644 |
tgttacggttaattaagctaggaaataatcaaaagtatatacctcaatgttggagtggaatcaattctgtaagtgttactccctttcttagcatactctt |
33412743 |
T |
|
| Q |
398 |
ccatatcaagttcatatagttttttagtatcatcaggaacaggtactttccattttctcaaagaagcaactatgaccctggccattctagtgaaagtact |
497 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33412744 |
ccatatcaagttcatatagttttttagtatcatcaggaacaggtactttccattttctcaaagaagcaactatgaccctagccattctagtgaaagtact |
33412843 |
T |
|
| Q |
498 |
ccctgcaggcaatttgtgtctataaaagggtattcctcccaagaatatcatgattgatattgctaatcctagagttggcaaagcatatccaagagtccaa |
597 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33412844 |
ccctgcaggcaatttgtgtctataaaagggtgttcctcccaagaatatcatgattgatattgctaatcctagagttggcaaagcatatccaagagtccaa |
33412943 |
T |
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| Q |
598 |
ccaacattatcttggatataaactagaacagtattagcaaaaagggtcccaaagaagatgctaaacatccaccaattgaaaaatgaaagtttatgtgaat |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33412944 |
ccaacattatcttggatataaactagaacagtattagcaaaaagggtcccaaagaagatgctaaacatccaccaattgaaaaatgaaagtttatgtgatt |
33413043 |
T |
|
| Q |
698 |
tttctgtagggtgaaaatcatcaaattggtctg |
730 |
Q |
| |
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||||| |||| |||||||||||||||||||||| |
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| T |
33413044 |
tttctttaggatgaaaatcatcaaattggtctg |
33413076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 379 - 689
Target Start/End: Complemental strand, 15729044 - 15728734
Alignment:
| Q |
379 |
cctttcttagcatactcttccatatcaagttcatatagttttttagtatcatcaggaacaggtactttccattttctcaaagaagcaactatgaccctgg |
478 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||||||||| ||||| ||| ||||| ||| || |||||||| ||| || ||| ||||| ||| | | |
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| T |
15729044 |
cctttctttgcatactcttccaaatcaagttcatatagttctttagggtcactaggaataggcacattccatttcttcatagcagccactattaccttag |
15728945 |
T |
|
| Q |
479 |
ccattctagtgaaagtactccctgcaggcaatttgtgtctataaaagggtattcctcccaagaatatcatgattgatattgctaatcctagagttggcaa |
578 |
Q |
| |
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| T |
15728944 |
ccattttagtaaagggacttcctgtaggtaatttatgtctatagaatggtgtgcctgccaaaaatattatgatagatattgcaagtccaagagttggaag |
15728845 |
T |
|
| Q |
579 |
agcatatccaagagtccaaccaacattatcttggatataaactagaacagtattagcaaaaagggtcccaaagaagatgctaaacatccaccaattgaaa |
678 |
Q |
| |
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||||| |||||||||||||||||||||||||| || || |||| ||| | ||| ||||||||||| |||| ||||||||| ||||||||||| ||||| |
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| T |
15728844 |
tgcatacccaagagtccaaccaacattatcttgtatgtagactaaaactgaatttgcaaaaagggttccaatgaagatgctgaacatccaccagttgaag |
15728745 |
T |
|
| Q |
679 |
aatgaaagttt |
689 |
Q |
| |
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||||| ||||| |
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| T |
15728744 |
aatgagagttt |
15728734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 693
Target Start/End: Complemental strand, 15736818 - 15736504
Alignment:
| Q |
379 |
cctttcttagcatactcttccatatcaagttcatatagttttttagtatcatcaggaacaggtactttccattttctcaaagaagcaactatgaccctgg |
478 |
Q |
| |
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|||||||| ||||||||||||| ||| || ||||| |||| ||||| ||| ||||| || || |||||||| | | | ||| || |||||| | | |
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| T |
15736818 |
cctttctttgcatactcttccaaatctagctcataaagttctttagggtcactaggaatagacacattccatttctttattgcagccacaatgaccttag |
15736719 |
T |
|
| Q |
479 |
ccattctagtgaaagtactccctgcaggcaatttgtgtctataaaagggtattcctcccaagaatatcatgattgatattgctaatcctagagttggcaa |
578 |
Q |
| |
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| T |
15736718 |
ccattttagtgaagggactccctgcaggtaatttatgtctatagaattgtgtgcctgccaaaaatgttatgatagatattccaagtccaagagttggaag |
15736619 |
T |
|
| Q |
579 |
agcatatccaagagtccaaccaacattatcttggatataaactagaacagtattagcaaaaagggtcccaaagaagatgctaaacatccaccaattgaaa |
678 |
Q |
| |
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|||||||||||||||||||||||||||||||| || || |||| |||| ||| |||| ||| |||||||||| |||||| ||||||||||||||||| |
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| T |
15736618 |
tgcatatccaagagtccaaccaacattatcttgtatgtagactaagacagaatttgcaagaagagtcccaaagacgatgctgaacatccaccaattgaag |
15736519 |
T |
|
| Q |
679 |
aatgaaagtttatgt |
693 |
Q |
| |
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||||| ||||||||| |
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| T |
15736518 |
aatgagagtttatgt |
15736504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 507 - 728
Target Start/End: Complemental strand, 15754672 - 15754451
Alignment:
| Q |
507 |
caatttgtgtctataaaagggtattcctcccaagaatatcatgattgatattgctaatcctagagttggcaaagcatatccaagagtccaaccaacatta |
606 |
Q |
| |
|
|||||||||||||||||| ||| | ||| |||||||| | |||||||||||||| | ||| |||||||| | |||||| |||||||||||||| |||||| |
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|
| T |
15754672 |
caatttgtgtctataaaaaggtgtgcctgccaagaatgtgatgattgatattgcaagtccaagagttggaagagcataaccaagagtccaacccacatta |
15754573 |
T |
|
| Q |
607 |
tcttggatataaactagaacagtattagcaaaaagggtcccaaagaagatgctaaacatccaccaattgaaaaatgaaagtttatgtgaattttctgtag |
706 |
Q |
| |
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||||| || || |||| ||| || ||||| || | |||||||| |||| | |||||||||| ||||| ||||| || ||| |||| |||||| ||| |
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| T |
15754572 |
tcttgaatgtacactataactgtgaatgcaaatagtgacccaaagacaatgcaagacatccaccagttgaagaatgagagcttaagtgatttttctttag |
15754473 |
T |
|
| Q |
707 |
ggtgaaaatcatcaaattggtc |
728 |
Q |
| |
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||| |||||| ||||| ||||| |
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| T |
15754472 |
ggtcaaaatcgtcaaactggtc |
15754451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 478 - 728
Target Start/End: Complemental strand, 15765385 - 15765135
Alignment:
| Q |
478 |
gccattctagtgaaagtactccctgcaggcaatttgtgtctataaaagggtattcctcccaagaatatcatgattgatattgctaatcctagagttggca |
577 |
Q |
| |
|
||||| ||| |||||| ||||||| | |||||||||||||||||| ||| ||||| |||||||| | |||||||||||||| | || | ||||| | |
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|
| T |
15765385 |
gccatgctaatgaaaggactccctttaatcaatttgtgtctataaaatggtgttcctgccaagaatgtgatgattgatattgcaaggccaattgttggaa |
15765286 |
T |
|
| Q |
578 |
aagcatatccaagagtccaaccaacattatcttggatataaactagaacagtattagcaaaaagggtcccaaagaagatgctaaacatccaccaattgaa |
677 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||| | ||| ||||||| ||| ||||| || | ||| | || ||| |||||||||||||||| |
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|
| T |
15765285 |
gagcataaccaagagtccaactcacattatcttgtacatacactagaattgtaaatgcaaatagtgaccccatgacaatgtaggacatccaccaattgaa |
15765186 |
T |
|
| Q |
678 |
aaatgaaagtttatgtgaattttctgtagggtgaaaatcatcaaattggtc |
728 |
Q |
| |
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||||| || ||| ||| |||||| |||||| |||||||||||||||||| |
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| T |
15765185 |
gaatgagagcttaagtgctttttctttagggtcaaaatcatcaaattggtc |
15765135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 495 - 622
Target Start/End: Complemental strand, 15779033 - 15778906
Alignment:
| Q |
495 |
actccctgcaggcaatttgtgtctataaaagggtattcctcccaagaatatcatgattgatattgctaatcctagagttggcaaagcatatccaagagtc |
594 |
Q |
| |
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|||||||| | |||||||||||||||| || ||| | ||| |||||||| | |||||||||||||| ||||| ||| | | |||||| ||||||||| |
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| T |
15779033 |
actccctgaaagcaatttgtgtctatagaaaggtgtgcctgccaagaatgtgatgattgatattgcaaatccagttgtttgaagagcataaccaagagtc |
15778934 |
T |
|
| Q |
595 |
caaccaacattatcttggatataaacta |
622 |
Q |
| |
|
|||| ||||||||||| ||||| |||| |
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| T |
15778933 |
caactcacattatcttgtatatacacta |
15778906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 28610040 - 28610110
Alignment:
| Q |
21 |
tatatacattaaccatctattaaacataatcaaccacctatttgaactgtgttaactccttaaaaagttgt |
91 |
Q |
| |
|
||||| |||| || ||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||| |
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|
| T |
28610040 |
tatatccattgactatctactaaacataattaaccacctatttgaactgacttaaccacttaaaaagttgt |
28610110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 28089176 - 28089118
Alignment:
| Q |
17 |
ttgttatatacattaaccatctattaaacataatcaaccacctatttgaactgtgttaa |
75 |
Q |
| |
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||||||||| ||||||||||||| |||||||||| ||||| ||||||||||| ||||| |
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| T |
28089176 |
ttgttatatccattaaccatctactaaacataattaaccatgtatttgaactgcgttaa |
28089118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 6798258 - 6798204
Alignment:
| Q |
21 |
tatatacattaaccatctattaaacataatcaaccacctatttgaactgtgttaa |
75 |
Q |
| |
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|||||||||||| |||||| ||||||||| |||||||||||| ||||||||||| |
|
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| T |
6798258 |
tatatacattaatcatctaccaaacataattaaccacctatttcaactgtgttaa |
6798204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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