View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1684-Insertion-4 (Length: 844)
Name: NF1684-Insertion-4
Description: NF1684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1684-Insertion-4 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 557; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 188 - 844
Target Start/End: Complemental strand, 31790370 - 31789719
Alignment:
| Q |
188 |
tgtaatctgcagtcatttcaaacaggcgttttaatcggatgcattactttctttcgaaattactaaggttaatccgtataaataatttctatttgaatca |
287 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790370 |
tgtaatctgcggtcatttcaaacaggcgttttaatcggatgcattactttctttcgaaattactaaggttaatccgtataaataatttctatttgaatca |
31790271 |
T |
|
| Q |
288 |
aacgtataaatttctatttcaatccaaatgcaaaagcaacaaaattgcgttgcaattatagctattagtgaagagaacacaacacaaatctaatagtaac |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
31790270 |
aacgtataaatttctatttcaatccaaatgcaaaagcaacaaaattgcgttgcaattatagctattagtgaagagaacacaacaaaaatctaatagcaac |
31790171 |
T |
|
| Q |
388 |
aaaagtttcaatctggtcacgagttctaatcaagagcaaggtactgaaaccaaattgcataggtgtgacttcatttaaccaaattgcatggatcaaggtc |
487 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790170 |
aaaagtttcaatctggtcacgagttctaatcaagagcaaggtactgaaaccaaattgcataggtgtgacttcatttaaccaaattgcatggatcaaggtc |
31790071 |
T |
|
| Q |
488 |
acgaatttaaagaatttaacaggcacaaacaatatatttttgtattaatattgaacttatgacatttatccatccaaatgataacatatctggattctgg |
587 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790070 |
acgaatttaaagaatttaacaggcacaaacaatatatttttgtattaatattgaacttatgacatttatccatccaaatgataacatatctggattctga |
31789971 |
T |
|
| Q |
588 |
aattacaaagaagaatatgcaggcataaaaaaggaaagcaaatggcctaggcaactagaatgtgtctttcaaatacttgatgataaataattttgatatt |
687 |
Q |
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|| ||||| | ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
31789970 |
aactacaatggagaatatgcaggcataaaaaaggaaagcaaaaggcctaggcaacaagaatgtgtctttcaaatacttgat----aataattttgatatt |
31789875 |
T |
|
| Q |
688 |
agcaattgacatgccactttctacgaaaggtaaaatgtcaataaccacaatcatgagtaagacgggacaaataataattaattatttattctttttgatt |
787 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
31789874 |
agcaactgacatgccac-ttctacgaaaggtaaaatgtcaataaccacaatcatgagtaaaacgggacaaataataattaattatttatt-attttgatt |
31789777 |
T |
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| Q |
788 |
ggaagaaggcttttcttgtaaaagttaacctga-caaaacccattttgaattctctat |
844 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
31789776 |
ggaagaaggcttttcttgtaaaagttaacctgatgaaaacccattttgtcttctctat |
31789719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 590 - 844
Target Start/End: Complemental strand, 32033324 - 32033068
Alignment:
| Q |
590 |
ttacaaagaagaatatgcaggcataaaaaaggaaagcaaatggcctaggcaactagaatgtgtctttcaaatacttgatgataaataattttgatattag |
689 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32033324 |
ttacaaagaagaatatgcaggcataaaaaaggaaagcaaatggcctaggcaactagaatgtgtctttcaaatacttgataataaataattttgatattag |
32033225 |
T |
|
| Q |
690 |
caattgacatgccactttctacgaaaggtaaaatgtcaataaccacaatcatgagtaagacgggacaaataataattaattatttattctttttgattgg |
789 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
32033224 |
caattgacatgccac-ttctacgaaaggtaaaacgtcaataaccacaatcatgagtaaaacgggacaaataataattaattatttattctttttgattgg |
32033126 |
T |
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| Q |
790 |
aagaaggcttttct--tgtaaaagttaacctga-caaaacccattttgaattctctat |
844 |
Q |
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|||||||||||||| | ||||||||||||||| |||||||||||||||||| |||| |
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| T |
32033125 |
aagaaggcttttcttatataaaagttaacctgatgaaaacccattttgaattcgctat |
32033068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 305 - 747
Target Start/End: Complemental strand, 40545869 - 40545408
Alignment:
| Q |
305 |
ttcaatccaaatgcaaaagcaacaaaattgcgttgcaattatagctattagtgaagagaacacaacacaaatctaatagtaacaaaagtttcaatctggt |
404 |
Q |
| |
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||||||||||||||||||||||||||||| | |||||| | |||||| |||||||||||| |||| ||||||||||| ||||||| |||||||||||| |
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| T |
40545869 |
ttcaatccaaatgcaaaagcaacaaaattatggtgcaatcagagctatgagtgaagagaactaaacagaaatctaatagcaacaaaattttcaatctggt |
40545770 |
T |
|
| Q |
405 |
cacgagttctaatcaagagcaaggtactgaaaccaaattgcataggtgtgacttcatttaaccaaattgcatggatcaaggtcacgaatttaaagaattt |
504 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||| |||| ||| ||| |||||| |||||| | |||||||||||||||||| |||||||||||| |
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| T |
40545769 |
cacaggttctaatcaagagcaaggtactgaaaccaaatcacataagtgcgac-tcatttgaccaaactacatggatcaaggtcacgagtttaaagaattt |
40545671 |
T |
|
| Q |
505 |
aacaggcacaaacaatatat-------------------ttttgtattaatattgaacttatgacatttatccatccaaatgataacatatctggattct |
585 |
Q |
| |
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|| |||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||| |
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| T |
40545670 |
aataggcacaatcaatatataaagacgtaaaagaaagaactttgtattaatattgaacttctgacacttatccatccaaatgataacatatcaggattct |
40545571 |
T |
|
| Q |
586 |
ggaattacaaagaagaatatgcaggcataaa------aaaggaaagcaaatggcctaggcaactagaatgtgtctttcaaatacttgatgataaataatt |
679 |
Q |
| |
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| || ||||| |||||||||||| ||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||| |||| || |
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| T |
40545570 |
gaaactacaatgaagaatatgcatgcataaaaaaaggaaaggaaagcaaatggcctagtcaactagaaagtgtctttcaaatacttgat----aatagtt |
40545475 |
T |
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| Q |
680 |
ttgatattagcaattga-catgccactttctacgaaaggtaaaatgtcaataaccacaatcatgagtaa |
747 |
Q |
| |
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||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40545474 |
ttgatattagcaattgatca--ccactttctataaaaggtaaaatgtcaataaccacaatcatgagtaa |
40545408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 349 - 546
Target Start/End: Complemental strand, 32033519 - 32033322
Alignment:
| Q |
349 |
ctattagtgaagagaacacaacacaaatctaatagtaacaaaagtttcaatctggtcacgagttctaatcaagagcaaggtactgaaaccaaattgcata |
448 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32033519 |
ctattagtgaagagaacacaacaaaaatctaatagcaacaaaagtttcaatctggtcacgagttctaatcaagagcaaggtactgaaaccaaattgcata |
32033420 |
T |
|
| Q |
449 |
ggtgtgacttcatttaaccaaattgcatggatcaaggtcacgaatttaaagaatttaacaggcacaaacaatatatttttgtattaatattgaactta |
546 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32033419 |
ggtgtgacttaatttaaccaaattgcatggatcaaggtcacgaatttaaagaatttaacaggcacaaacaatatatttttgtattaatattgaactta |
32033322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 4 - 195
Target Start/End: Complemental strand, 31790618 - 31790427
Alignment:
| Q |
4 |
aacagttacatcacctgcttatataaaagctagttgctgacctgcaattgcagatttctccctattactgacttacacttgtgagtgagctatacagttg |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31790618 |
aacagttacatcacctgcttatataaaagctagttgctgacctgcaattgcagatttctccctattactgacttacacttgtgagtgagctatatagttg |
31790519 |
T |
|
| Q |
104 |
tttacaactgtcatacctaactttacgagtcagttattgcagtgcttagcaagtgttaatacaacaagacttgtgtaagctatctgtaatct |
195 |
Q |
| |
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| |||||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31790518 |
tgtacaactgccataactaactttatgagtcagttattgcagtgcttagctagtgttaatacaacaagacttgtgtaagctatctgtaatct |
31790427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 188 - 300
Target Start/End: Complemental strand, 40546040 - 40545928
Alignment:
| Q |
188 |
tgtaatctgcagtcatttcaaacaggcgttttaatcggatgcattactttctttcgaaattactaaggttaatccgtataaataatttctatttgaatca |
287 |
Q |
| |
|
||||| |||||||||||||||||| | |||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||| |
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| T |
40546040 |
tgtaaactgcagtcatttcaaacaagtgtttcaatcagatgcattactttctttcacgattactaaaattaatccgtataaataatttctctttgaatca |
40545941 |
T |
|
| Q |
288 |
aacgtataaattt |
300 |
Q |
| |
|
||||||||||||| |
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| T |
40545940 |
aacgtataaattt |
40545928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 305 - 447
Target Start/End: Complemental strand, 5163123 - 5162981
Alignment:
| Q |
305 |
ttcaatccaaatgcaaaagcaacaaaattgcgttgcaattatagctattagtgaagagaacacaacacaaatctaatagtaacaaaagtttcaatctggt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||| | |||||| ||||||| |||| |||| ||||||||||| ||||||| |||||||||||| |
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| T |
5163123 |
ttcaatccaaatgcaaaagcaacaaaattgtggtgtaatcagagctatgagtgaagcgaactaaacagaaatctaatagcaacaaaattttcaatctggt |
5163024 |
T |
|
| Q |
405 |
cacgagttctaatcaagagcaaggtactgaaaccaaattgcat |
447 |
Q |
| |
|
||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
5163023 |
cacaagttctaatcaagagcaaggtaatgaaatcaaattgcat |
5162981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 467 - 623
Target Start/End: Complemental strand, 5162990 - 5162814
Alignment:
| Q |
467 |
caaattgcatggatcaaggtcacgaatttaaagaatttaacaggcacaaacaatatatt--------------------tttgtattaatattgaactta |
546 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |
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| T |
5162990 |
caaattgcatggatcaaggtcacgagtttaaagaatttaataggcacaaacaatatataaagacgtaaaaagaaagaactttgtattaatattgaactaa |
5162891 |
T |
|
| Q |
547 |
tgacatttatccatccaaatgataacatatctggattctggaattacaaagaagaatatgcaggcataaaaaaggaa |
623 |
Q |
| |
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| ||||||| ||| ||||||||||||||| |||||||| || ||||| ||||||||||||||||||| ||||||| |
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| T |
5162890 |
aggtatttatctatctaaatgataacatatcaggattctgaaactacaatgaagaatatgcaggcataagaaaggaa |
5162814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 725 - 809
Target Start/End: Complemental strand, 5162764 - 5162685
Alignment:
| Q |
725 |
tcaataaccacaatcatgagtaagacgggacaaataataattaattatttattctttttgattggaagaaggcttttcttgtaaa |
809 |
Q |
| |
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|||||||||| |||||||||||| |||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
5162764 |
tcaataaccataatcatgagtaaaacgggacag-taataattaatt---tattctttt-gattggaagaaggcttttcttgtaaa |
5162685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 245 - 292
Target Start/End: Complemental strand, 5163239 - 5163192
Alignment:
| Q |
245 |
aattactaaggttaatccgtataaataatttctatttgaatcaaacgt |
292 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
5163239 |
aattattaaagttaatccgtagaaataatttctctttgaatcaaacgt |
5163192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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