View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_high_15 (Length: 412)
Name: NF16840_high_15
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_15 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 2 - 396
Target Start/End: Original strand, 30769859 - 30770250
Alignment:
| Q |
2 |
ttctcaatggaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcattacagtaacatcagatgaagatcttgataacatgat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30769859 |
ttctcaatggaagaccctttactctcaagtaccagcttccaaatgaagaccttgataacctcattacagtaacatcagatgaagatcttgataacatgat |
30769958 |
T |
|
| Q |
102 |
tgaagaatatgatcgtatagcatctgcatcttctaccatgaaaccttcatcatcaagactaagagtgttcttgttcttcacaaaaccagagtccacactt |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
30769959 |
tgaagaatatgatcgtatagcatcggcatcttctacaatgaaaccttcatcatcaagactaagagtgtttttgttcttcacaaaaccagataccacactt |
30770058 |
T |
|
| Q |
202 |
tcaatgggatcacttcttgatgatgcaaaatctgagacatggtttgttgatgcactcaacaactcagggattctctcaagaggtgtgtcagattctgcag |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30770059 |
tcaatgggatcacttcttgatgatgcaaaatctgagacatggtttgttgatgcactcaacaactcagggattctctcaagaggtgtgtcagattcagcag |
30770158 |
T |
|
| Q |
302 |
gagattcttttgtgaatcttgataatgttcctgctagtggtgattcaagcaataacttagaatctcaagtagaatcactgactctgcttgaaaac |
396 |
Q |
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| T |
30770159 |
gagattcttttgtgaatcttgatagtgttcctgcta---gtgattcaagcaataacttggaatctcaagtagaatcattgactctgcttgaaaac |
30770250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 44884434 - 44884380
Alignment:
| Q |
11 |
gaagaccctttactctcaagtaccagcttcctaatgaagaccttgataacctcat |
65 |
Q |
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||||||| || |||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
44884434 |
gaagacctttcactctcaagtaccatcttcccaatgaagaccttgacaacctcat |
44884380 |
T |
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