View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16840_high_22 (Length: 302)

Name: NF16840_high_22
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16840_high_22
NF16840_high_22
[»] chr7 (12 HSPs)
chr7 (1-292)||(26042452-26042746)
chr7 (2-113)||(13902478-13902589)
chr7 (1-87)||(9099080-9099166)
chr7 (1-87)||(9099894-9099980)
chr7 (1-113)||(19237883-19237995)
chr7 (1-113)||(21211400-21211512)
chr7 (1-111)||(39285363-39285473)
chr7 (83-113)||(13259349-13259379)
chr7 (83-113)||(13261581-13261611)
chr7 (26-113)||(14424529-14424618)
chr7 (1-92)||(13424739-13424831)
chr7 (24-113)||(21284219-21284310)
[»] scaffold0598 (1 HSPs)
scaffold0598 (1-113)||(2559-2671)
[»] scaffold0081 (1 HSPs)
scaffold0081 (1-113)||(13218-13330)
[»] chr2 (8 HSPs)
chr2 (1-113)||(41122444-41122556)
chr2 (1-110)||(26623235-26623344)
chr2 (23-113)||(23185118-23185208)
chr2 (23-113)||(23596381-23596471)
chr2 (1-105)||(24724091-24724194)
chr2 (1-111)||(22271319-22271429)
chr2 (23-113)||(45087783-45087875)
chr2 (23-112)||(28712492-28712583)
[»] chr4 (6 HSPs)
chr4 (2-113)||(6640912-6641023)
chr4 (1-113)||(22089504-22089616)
chr4 (2-113)||(8686218-8686329)
chr4 (1-113)||(11900328-11900440)
chr4 (1-111)||(41115589-41115699)
chr4 (1-113)||(15560490-15560604)
[»] scaffold1747 (1 HSPs)
scaffold1747 (1-111)||(547-656)
[»] scaffold1745 (1 HSPs)
scaffold1745 (1-111)||(755-864)
[»] scaffold1657 (1 HSPs)
scaffold1657 (3-113)||(1041-1151)
[»] chr3 (7 HSPs)
chr3 (1-113)||(14310904-14311016)
chr3 (1-113)||(26418542-26418654)
chr3 (15-113)||(19250223-19250321)
chr3 (1-96)||(12221300-12221395)
chr3 (1-78)||(20724298-20724375)
chr3 (1-113)||(23539046-23539158)
chr3 (14-112)||(6252635-6252729)
[»] chr8 (5 HSPs)
chr8 (14-113)||(19706730-19706829)
chr8 (1-111)||(19957158-19957269)
chr8 (5-113)||(43644100-43644208)
chr8 (2-113)||(18771912-18772023)
chr8 (1-66)||(15934478-15934543)
[»] chr6 (8 HSPs)
chr6 (14-113)||(17304092-17304191)
chr6 (2-109)||(7762866-7762973)
chr6 (14-113)||(19469853-19469952)
chr6 (2-112)||(26941629-26941739)
chr6 (18-113)||(3680326-3680421)
chr6 (1-42)||(25929779-25929820)
chr6 (14-66)||(16914741-16914793)
chr6 (23-113)||(19833824-19833915)
[»] chr5 (4 HSPs)
chr5 (14-113)||(25097857-25097956)
chr5 (14-113)||(25156949-25157048)
chr5 (33-113)||(21199846-21199926)
chr5 (22-111)||(21207630-21207719)
[»] chr1 (5 HSPs)
chr1 (1-113)||(12625291-12625403)
chr1 (1-113)||(17025745-17025857)
chr1 (1-113)||(18614136-18614248)
chr1 (14-113)||(21192640-21192739)
chr1 (4-42)||(20908724-20908762)
[»] scaffold0025 (1 HSPs)
scaffold0025 (2-111)||(73757-73866)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-113)||(2421-2533)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1-113)||(2843-2955)
[»] scaffold0364 (1 HSPs)
scaffold0364 (2-113)||(5397-5509)
[»] scaffold1359 (1 HSPs)
scaffold1359 (26-113)||(4-93)
[»] scaffold0116 (1 HSPs)
scaffold0116 (83-113)||(21792-21822)
[»] scaffold0064 (1 HSPs)
scaffold0064 (2-108)||(44639-44745)
[»] scaffold0622 (1 HSPs)
scaffold0622 (4-44)||(1956-1996)
[»] scaffold0028 (1 HSPs)
scaffold0028 (49-113)||(80587-80651)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 7e-89; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 26042746 - 26042452
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaa-gaa 99  Q
    |||||||| | | |||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| || |||  ||||| || ||||| |||    
T  26042746 tttttatctgctgcatttagaatttgaacatcacttcagaagttgtaatctaactgcctctgatcaatgacttcagcaggagaaaacaaaaaaaaaagaa 26042647  T
Q  100 aacacaattcaaccnnnnnnncttgtatttttctcatcttcagacacaccctagtgtggcatctcatctcacataccctgtaatctcggaccttactgcc 199  Q
    ||||||||||||||       ||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||||||||    
T  26042646 aacacaattcaacccctccttcttatgtttttctcatcttcaaacacaccctagtgtggcatctcatctcacataccctataatcgtggaccttactgcc 26042547  T
Q  200 -tttttgtcttcatccaaattgttgtcctaatgactcaaactctatatcatatcatccaagccactttccaacactaaagtgct-cctttgctac 292  Q
     ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26042546 ctttttgtcttcagtcaaattgctgtcctaatgactcaaactctatatcatatcatccaagccactttccaacactaaagtgctccctttgctac 26042452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 13902478 - 13902589
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    ||||||||| |  |||||||||||||||||||| |||||||||  | ||||  |||||||||||| ||||||  |||||  |||||||||||||||  ||    
T  13902478 ttttatccgctgtatttagaatctgaacatcacatcagaagttgaactctatttgcttctgatcattgacttatgtaggagaaaacgaagaaaaagctaa 13902577  T
Q  102 cacaattcaacc 113  Q
    ||||||||||||    
T  13902578 cacaattcaacc 13902589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9099080 - 9099166
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaac 87  Q
    |||||||||| | ||||||||||||||||||||||||| ||| |  | |||| ||||||||||||| |||||| |||||| ||||||    
T  9099080 tttttatccgctgcatttagaatctgaacatcacttcaaaagctgaattctatctgcttctgatcagtgacttcagtaggaaaaaac 9099166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9099894 - 9099980
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaac 87  Q
    |||||||||| | ||||||||||||||||||||||||| ||| |  | |||| ||||||||||||| |||||| |||||| ||||||    
T  9099894 tttttatccgctgcatttagaatctgaacatcacttcaaaagctgaattctatctgcttctgatcagtgacttcagtaggaaaaaac 9099980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 19237883 - 19237995
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | ||| |||||||||||||||||||||||||||  | ||||  ||||| | |  | |||||| |||| |  |||| |||||||||||||    
T  19237883 tttttatccgctgcatctagaatctgaacatcacttcagaagttgaactctatttgcttataactagtgacttcagtaagagaaaatgaagaaaaagaaa 19237982  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  19237983 acacaattcaacc 19237995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 21211400 - 21211512
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | ||||||| || ||||||||| |||||||| |  | |||| || ||||||||||  ||||| ||||||  |||||||| ||||||  |    
T  21211400 tttttatccgctacatttagtatatgaacatcatttcagaagctgaactctatctacttctgatcagcgacttcagtaggagaaaacgaataaaaagcta 21211499  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  21211500 acacaattcaacc 21211512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 39285363 - 39285473
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | ||||||| ||| ||||||||||||||||| |  | |||| || |||||||| | |||||| ||||||  |||| |||||||||   |    
T  39285363 tttttatccggtgcatttagtatcagaacatcacttcagaagctgaactctatctacttctgattactgacttcagtaggagaaaatgaagaaaaaagta 39285462  T
Q  101 acacaattcaa 111  Q
    |||||||||||    
T  39285463 acacaattcaa 39285473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 13259349 - 13259379
Alignment:
Q  83 aaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||||||||||||||||||||||||||||||    
T  13259349 aaaacgaagaaaaagaaaacacaattcaacc 13259379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 13261581 - 13261611
Alignment:
Q  83 aaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||||||||||||||||||||||||||||||    
T  13261581 aaaacgaagaaaaagaaaacacaattcaacc 13261611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 113
Target Start/End: Complemental strand, 14424618 - 14424529
Alignment:
Q  26 gaacatcacttcagaagttttaatctaactgcttctgatcaatgactttag--tagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||   | || | ||||||||||||| ||  |||||  ||||  ||||||||||||||| |||||||||||||||    
T  14424618 gaacatcacttcagaagtagaactcgatctgcttctgatcagtgtttttagattaggagaaaacgaagaaaaagtaaacacaattcaacc 14424529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13424739 - 13424831
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtaggga-aaaacgaaga 92  Q
    |||||||| ||| ||||||| || |||||||||||||||||| |  | ||||  |||||||||||| |||| | |||| ||| ||||||||||    
T  13424739 tttttatcagttgcatttagtatttgaacatcacttcagaagctgaactctatatgcttctgatcagtgacctcagtatggagaaaacgaaga 13424831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 21284219 - 21284310
Alignment:
Q  24 ctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttag--tagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||||||||||||||||| |   | |||| ||||||||||||| ||  || ||  |||| ||||||| |||||||| |||||||||||||||    
T  21284219 ctgaacatcacttcagaaatagaactctatctgcttctgatcagtgttttcagcttaggaaaaaacggagaaaaagtaaacacaattcaacc 21284310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2559 - 2671
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| |||||||||||||||||||| |  | |||| |||||||||| || |||||| ||||||  ||||||||||||||| ||    
T  2559 tttttatccgctgcatttagattctgaacatcacttcagaagctgaactctatctgcttctgaacagtgacttcagtaggagaaaacgaagaaaaagcaa 2658  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  2659 acacaattcaacc 2671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13330 - 13218
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| | ||||||||||||||||||||  | |||| ||||||||||||| |||||| ||||||  |||||||||||||||  |    
T  13330 tttttatccgctacatttagattttgaacatcacttcagaagttgaactctatctgcttctgatcagtgacttcagtaggagaaaacgaagaaaaagcta 13231  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  13230 acacaattcaacc 13218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 41122444 - 41122556
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| |||||| ||||||||||||| |  | |||| ||||||||||||| |||||| ||||||  ||||||||||||||| ||    
T  41122444 tttttatccgctacatttagattctgaaaatcacttcagaagctgaactctatctgcttctgatcagtgacttcagtaggagaaaacgaagaaaaagtaa 41122543  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  41122544 acacaattcaacc 41122556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 26623235 - 26623344
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| |||||||||||||||||||| |  | |||| |||||||||| || |||||| ||||||  |||||||||||||| |||    
T  26623235 tttttatccgatgcatttagattctgaacatcacttcagaaggtgaattctatctgcttctgaacagtgacttaagtaggagaaaacgaagaaaaacaaa 26623334  T
Q  101 acacaattca 110  Q
    ||||||||||    
T  26623335 acacaattca 26623344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 23185118 - 23185208
Alignment:
Q  23 tctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||  |||| ||||||||||  ||||||||||||||    
T  23185118 tctgaacatcacttcagaagttgaactctatctgcttctgatcaatgacttcagtaggagaaaaagaagaaaaagctaacacaattcaacc 23185208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 23596381 - 23596471
Alignment:
Q  23 tctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||||||  | |||| |||||||||||||||||||| ||||||  |||| ||||||||||  ||||||||||||||    
T  23596381 tctgaacatcacttcagaagttgaactctatctgcttctgatcaatgacttcagtaggagaaaaagaagaaaaagctaacacaattcaacc 23596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 24724194 - 24724091
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| |||||||||||||||||||| |  | |||| |||||||||| |||||| || ||||||  ||||||||||||||||||    
T  24724194 tttttatccgctgcatttaga-tctgaacatcacttcagaagctgaactctatctgcttctgaccaatgatttcagtaggagaaaacgaagaaaaagaaa 24724096  T
Q  101 acaca 105  Q
    |||||    
T  24724095 acaca 24724091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 22271429 - 22271319
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| ||||| |||||||||||||| |  | |||| |||||| |||||| |||||| ||||||  ||| ||||||||||| ||    
T  22271429 tttttatccgctgcatttagattctgatcatcacttcagaagctgaactctatctgcttatgatcagtgacttcagtaggagaaatcgaagaaaaagtaa 22271330  T
Q  101 acacaattcaa 111  Q
    |||||||||||    
T  22271329 acacaattcaa 22271319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 45087783 - 45087875
Alignment:
Q  23 tctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttag--tagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||||| | |||||| ||||||||||||| ||  || ||  ||||  |||| ||||||||||||||||||||||||||    
T  45087783 tctgaacatcacttcagaagtataaatctatctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaaacacaattcaacc 45087875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 112
Target Start/End: Original strand, 28712492 - 28712583
Alignment:
Q  23 tctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttag--tagggaaaaacgaagaaaaagaaaacacaattcaac 112  Q
    ||||||||||||||||||||| | | |||| ||||||||||||||||  || ||  ||||  ||||  ||||||||||||||| ||||||||    
T  28712492 tctgaacatcacttcagaagtataactctatctgcttctgatcaatgttttcagcttaggagaaaaataagaaaaagaaaacataattcaac 28712583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 6641023 - 6640912
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    |||||||| || ||||||| ||||||||||||||||||||| |  | |||| |||||||||||||||||||| |||| |  |||||||||||||||  ||    
T  6641023 ttttatccattgcatttagtatctgaacatcacttcagaagctgaactctatctgcttctgatcaatgacttaagtatgagaaaacgaagaaaaagctaa 6640924  T
Q  102 cacaattcaacc 113  Q
    ||||||||||||    
T  6640923 cacaattcaacc 6640912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22089616 - 22089504
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | ||||||| ||||||||||||||||||||| |  | |||| ||||||||||||| |||||| |||||   |||||||||||||||  |    
T  22089616 tttttatccgctgcatttagcatctgaacatcacttcagaagctgaactctatctgcttctgatcagtgacttcagtagaataaaacgaagaaaaagtta 22089517  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  22089516 acacaattcaacc 22089504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 113
Target Start/End: Original strand, 8686218 - 8686329
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    ||||||||| | ||||||||||||||||||||||||| |||    | || | ||||||||||||| |||||| |||| |  ||||||||||||||| |||    
T  8686218 ttttatccgctgcatttagaatctgaacatcacttcaaaagcagaactcaatctgcttctgatcagtgacttcagtaagagaaaacgaagaaaaagcaaa 8686317  T
Q  102 cacaattcaacc 113  Q
    ||||||||||||    
T  8686318 cacaattcaacc 8686329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 11900440 - 11900328
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| |||||||||||||||||||  |  | |||| |||||||||| || ||| || |||||| ||||||||| |||||   |    
T  11900440 tttttatccgctgcatttagattctgaacatcacttcagaatctgaactctatctgcttctgaacagtgatttcagtaggaaaaaacgaaaaaaaaacta 11900341  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  11900340 acacaattcaacc 11900328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 41115589 - 41115699
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||| ||| |||||  ||||||||||||| |  | |||| |||||||||||||  ||||| ||||||  |||||||||||||||  |    
T  41115589 tttttatccgctgcattaagattctgattatcacttcagaagctgaactctatctgcttctgatcagcgacttcagtaggagaaaacgaagaaaaagtta 41115688  T
Q  101 acacaattcaa 111  Q
    |||||||||||    
T  41115689 acacaattcaa 41115699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 15560604 - 15560490
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttag--tagggaaaaacgaagaaaaaga 98  Q
    |||||||||| | |||||||| |||||||||||||||||||| |  | ||||   | |||||| || |||||| ||  ||||  ||||| |||||||||     
T  15560604 tttttatccgctgcatttagattctgaacatcacttcagaagctgaactctattaggttctgaacagtgacttcagtttaggagaaaacaaagaaaaagc 15560505  T
Q  99 aaacacaattcaacc 113  Q
    |||||||||||||||    
T  15560504 aaacacaattcaacc 15560490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1747 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1747
Description:

Target: scaffold1747; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 656 - 547
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| |  || |||||||||| |||||||| ||||||| ||||||||| ||||||||||| |||||| ||||||  ||||||||||||||| ||    
T  656 tttttatccgctggatctagaatctgatcatcactt-agaagttgtaatctaacagcttctgatcagtgacttcagtaggagaaaacgaagaaaaagcaa 558  T
Q  101 acacaattcaa 111  Q
    |||||||||||    
T  557 acacaattcaa 547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1745 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1745
Description:

Target: scaffold1745; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 755 - 864
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| |  || |||||||||| |||||||| ||||||| ||||||||| ||||||||||| |||||| ||||||  ||||||||||||||| ||    
T  755 tttttatccgctggatctagaatctgatcatcactt-agaagttgtaatctaacagcttctgatcagtgacttcagtaggagaaaacgaagaaaaagcaa 853  T
Q  101 acacaattcaa 111  Q
    |||||||||||    
T  854 acacaattcaa 864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 1151 - 1041
Alignment:
Q  3 tttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaac 102  Q
    |||||||| | |||||||||||||||| |||||||||||||| || |||||||| ||||||  | |||||| ||||||  ||||||||||||||  ||||    
T  1151 tttatccgctgcatttagaatctgaacttcacttcagaagttgtactctaactgattctgactagtgacttcagtaggagaaaacgaagaaaaatcaaac 1052  T
Q  103 acaattcaacc 113  Q
    |||||||||||    
T  1051 acaattcaacc 1041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 14311016 - 14310904
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||||| |||||||| |||||  ||||||||||||| |  | |||| ||||||||||||| ||| || ||||||  |||||||||||||| |||    
T  14311016 tttttatccgttgcatttagattctgattatcacttcagaagctggactctatctgcttctgatcagtgatttcagtaggagaaaacgaagaaaaataaa 14310917  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  14310916 acacaattcaacc 14310904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 26418542 - 26418654
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| | ||||||||||||||||||||  | |||| |||||| | | || |||||| ||||||  ||||||||||||||| ||    
T  26418542 tttttatccgctgcatttagattatgaacatcacttcagaagttcaactctatctgctttttaacagtgacttcagtaggagaaaacgaagaaaaagcaa 26418641  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  26418642 acacaattcaacc 26418654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 19250223 - 19250321
Alignment:
Q  15 atttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||||||||||||||||||||||||||||   | |||| |||||| |||| | |||||| ||||||  ||||||||| |||||  ||||||||||||||    
T  19250223 atttagaatctgaacatcacttcagaagtggaactctatctgcttttgattagtgacttcagtaggagaaaacgaagtaaaagctaacacaattcaacc 19250321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12221395 - 12221300
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaa 96  Q
    |||||||||| | |||||||| |||||||||||||  ||||| |  | | || |||||||||||||||||||| ||||||  ||||||||||||||    
T  12221395 tttttatccgctgcatttagattctgaacatcactatagaagctgaactatatctgcttctgatcaatgacttcagtaggcgaaaacgaagaaaaa 12221300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20724375 - 20724298
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagta 78  Q
    |||||||| | | |||||||| |||||||||||||||||||| |  |||||| ||||||||||||| |||||| ||||    
T  20724375 tttttatctgctgcatttagattctgaacatcacttcagaagctgaaatctatctgcttctgatcagtgacttcagta 20724298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 23539046 - 23539158
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| ||||||||||| |||||||| |  | |||| |||||| |||  | |||||| | |||| |||||||||||||||   |    
T  23539046 tttttatccgctgcatttagattctgaacatcatttcagaagctgaattctatctgcttttgactagtgacttcattaggaaaaaacgaagaaaaaacta 23539145  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  23539146 acacaattcaacc 23539158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 6252729 - 6252635
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaac 112  Q
    |||||||| ||||||| |||||||||||| |  | |||| |||||||||| || |||||| ||||||  ||    |||||||||||| |||||||||||    
T  6252729 catttagattctgaacctcacttcagaagctgaactctatctgcttctgaacagtgacttcagtaggagaa----aagaaaaagaaaccacaattcaac 6252635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 19706829 - 19706730
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||| |||||||||||||||||||||||  | |||| ||||||||||||| |||||| | ||||  |||||||||||||||  ||||||||||||||    
T  19706829 catttagtatctgaacatcacttcagaagttgaactctatctgcttctgatcagtgacttcaataggagaaaacgaagaaaaagctaacacaattcaacc 19706730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 19957158 - 19957269
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatg-actttagtagggaaaaacgaagaaaaagaa 99  Q
    |||||||||| | ||||||||||||||||||||||||| ||| |  ||| || ||||||||||||| || |||| ||||||  |||||||||||||||      
T  19957158 tttttatccgctgcatttagaatctgaacatcacttcaaaagctgaaatttatctgcttctgatcagtgaacttcagtaggagaaaacgaagaaaaagct 19957257  T
Q  100 aacacaattcaa 111  Q
    ||||||||||||    
T  19957258 aacacaattcaa 19957269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 113
Target Start/End: Complemental strand, 43644208 - 43644100
Alignment:
Q  5 tatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacac 104  Q
    |||||| | ||||||| || |||||||||||||||||| |  | |||| ||||||||||||| ||| || |||||| ||||| ||| ||||||  |||||    
T  43644208 tatccgctgcatttagtatgtgaacatcacttcagaagctgaactctatctgcttctgatcagtgaattcagtaggaaaaaatgaaaaaaaagctaacac 43644109  T
Q  105 aattcaacc 113  Q
    |||||||||    
T  43644108 aattcaacc 43644100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 18772023 - 18771912
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    ||||||||| | |||||||| ||||||||||| ||||||||||  | ||||  ||||||||| || |||||| ||||||  || | ||||||||||  ||    
T  18772023 ttttatccgctacatttagattctgaacatcaattcagaagttgaactctatgtgcttctgaacagtgacttcagtaggagaagatgaagaaaaagctaa 18771924  T
Q  102 cacaattcaacc 113  Q
    ||||||||||||    
T  18771923 cacaattcaacc 18771912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 15934478 - 15934543
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatca 66  Q
    |||||||||||| ||||||  ||||||||||||||| |||||||  | |||| |||||| ||||||    
T  15934478 tttttatccgttgcatttactatctgaacatcactttagaagttgaactctatctgcttttgatca 15934543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 17304092 - 17304191
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||||||| |||||||||||||||||||| |  | |||| ||||||||||||| |||||| ||||||  |||||||||||||||  ||||||||||||||    
T  17304092 catttagattctgaacatcacttcagaagctgaactctatctgcttctgatcagtgacttcagtaggagaaaacgaagaaaaagctaacacaattcaacc 17304191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 7762973 - 7762866
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    ||||||||| | |||||||||| |||||||||||||||||| |  | |||| ||||||||||||| ||| || ||||||  |||||||||||| ||  ||    
T  7762973 ttttatccgctgcatttagaatatgaacatcacttcagaagctgaactctatctgcttctgatcagtgatttcagtaggagaaaacgaagaaatagctaa 7762874  T
Q  102 cacaattc 109  Q
    ||||||||    
T  7762873 cacaattc 7762866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 19469952 - 19469853
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||||||||||||||   | |||| ||| ||||||||| |||||| ||||||  ||||| | |||||||  ||||||||||||||    
T  19469952 catttagaatctgaacatcacttcagaagtggaactctatctgtttctgatcagtgacttcagtaggagaaaacaatgaaaaagctaacacaattcaacc 19469853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 26941739 - 26941629
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    ||||||||| | |||||||||||||||| |||||||||||  |  | |||| ||||||||||||| |||||| ||| |   |||||||||||||||  ||    
T  26941739 ttttatccgctgcatttagaatctgaacttcacttcagaatctgaactctatctgcttctgatcagtgacttcagtggaagaaaacgaagaaaaagctaa 26941640  T
Q  102 cacaattcaac 112  Q
    |||||||||||    
T  26941639 cacaattcaac 26941629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 3680421 - 3680326
Alignment:
Q  18 tagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||| ||||||| |  | |||| ||||||||||||| ||| || ||||||  ||| ||||||||||  |||||||||||||||    
T  3680421 tagaatctgaacatcacctcagaagctgaactctatctgcttctgatcagtgatttcagtaggataaatcgaagaaaaaacaaacacaattcaacc 3680326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25929820 - 25929779
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaag 42  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  25929820 tttttatccgctgcatttagaatctgaacatcacttcagaag 25929779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 16914793 - 16914741
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatca 66  Q
    ||||||||||||||||||||||||||||  | || |||| |||||||||||||    
T  16914793 catttagaatctgaacatcacttcagaaactgtactctatctgcttctgatca 16914741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 19833824 - 19833915
Alignment:
Q  23 tctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttag-tagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||||||||||||||||| ||  || |||| ||||||||||||| ||  || || ||||  |||| || |||||||||||||||||||||||    
T  19833824 tctgaacatcacttcagaggtggtactctatctgcttctgatcagtgttttcagttaggagaaaaagatgaaaaagaaaacacaattcaacc 19833915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 25097857 - 25097956
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||||||||||||| |  |||||| ||||||||||||| | | || ||||||  ||||||||||||||| ||||| |||||||||    
T  25097857 catttagaatctgaacatcacttcagaagctgaaatctatctgcttctgatcagttatttcagtaggagaaaacgaagaaaaagcaaacataattcaacc 25097956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 25156949 - 25157048
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||||||||||||| |  |||||| ||||||||||||| | | || ||||||  ||||||||||||||| ||||| |||||||||    
T  25156949 catttagaatctgaacatcacttcagaagctgaaatctatctgcttctgatcagttatttcagtaggagaaaacgaagaaaaagcaaacataattcaacc 25157048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 21199846 - 21199926
Alignment:
Q  33 acttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||  | |||| ||||||||||||| |||||| ||||||  |||||||||||||||  ||||||||||||||    
T  21199846 acttcagaagttgaactctatctgcttctgatcagtgacttcagtaggagaaaacgaagaaaaagctaacacaattcaacc 21199926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 21207630 - 21207719
Alignment:
Q  22 atctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaa 111  Q
    |||||||||||| |||| ||| |  | |||| ||||||||||||| |||||| || |||  ||||||||||| |||  ||||||||||||    
T  21207630 atctgaacatcatttcataagctgaactctatctgcttctgatcagtgacttcagaaggagaaaacgaagaagaagctaacacaattcaa 21207719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 12625291 - 12625403
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||  | ||||||| |||||||||||||||||||||||  | |||| ||||||||||| | |||||||| ||||  ||||||||||||||   |    
T  12625291 tttttatcctctgcatttagtatctgaacatcacttcagaagttgaactctatctgcttctgatgagtgactttaataggagaaaacgaagaaaaaacta 12625390  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  12625391 acacaattcaacc 12625403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 17025745 - 17025857
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||||| |||||||||||| |||| ||  | |||| ||||||||||||| |||||| ||||||  ||||| ||||||||   |    
T  17025745 tttttatccgctgcatttagaatatgaacatcactttagaaattgaactctatctgcttctgatcagtgacttaagtaggagaaaacaaagaaaaatcta 17025844  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  17025845 acacaattcaacc 17025857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 18614248 - 18614136
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| |||||||||||| ||||||| |  | |||| |||||| |||||| |||||| ||||||  |||||||||||||||  |    
T  18614248 tttttatccgctgcatttagattctgaacatcacatcagaagctgaactctatctgcttttgatcagtgacttcagtaggagaaaacgaagaaaaagcta 18614149  T
Q  101 acacaattcaacc 113  Q
    ||| |||||||||    
T  18614148 acataattcaacc 18614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 21192640 - 21192739
Alignment:
Q  14 catttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||| |||||||||| |||||||||| |  | |||| |||||| |||||| |||||| ||||||  |||||||||||||||   |||||||||||||    
T  21192640 catttagtatctgaacatgacttcagaagctgaactctatctgcttatgatcagtgacttcagtaggagaaaacgaagaaaaagcttacacaattcaacc 21192739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 20908762 - 20908724
Alignment:
Q  4 ttatccgtttcatttagaatctgaacatcacttcagaag 42  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  20908762 ttatccgttgcatttagactctgaacatcacttcagaag 20908724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 73866 - 73757
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    ||||||||| | |||||||||||||||||  ||||||||||||  | |||| |||||| |||||| ||| || ||||||  ||||||||||||||| |||    
T  73866 ttttatccgctgcatttagaatctgaacaatacttcagaagttgaactctatctgcttttgatcagtgatttcagtaggagaaaacgaagaaaaagtaaa 73767  T
Q  102 cacaattcaa 111  Q
    || |||||||    
T  73766 caaaattcaa 73757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 2533 - 2421
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | ||||||| |||||||||||||| || ||| |  | |||| |||||||||||||  ||||| |||||   ||||| ||||||||| ||    
T  2533 tttttatccgctgcatttagtatctgaacatcactacataagctgaactctatctgcttctgatcagggacttcagtagaagaaaacaaagaaaaagcaa 2434  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  2433 acacaattcaacc 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2843 - 2955
Alignment:
Q  1 tttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    |||||||||| | |||||||| | |||||||||| |||||||||  | | || |||||| | |||| |||||| ||||||  |||||||||||||||  |    
T  2843 tttttatccgctgcatttagattttgaacatcacctcagaagttgaattatatctgcttattatcagtgacttcagtaggagaaaacgaagaaaaagcta 2942  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  2943 acacaattcaacc 2955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 5509 - 5397
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgc-ttctgatcaatgactttagtagggaaaaacgaagaaaaagaaa 100  Q
    ||||||||| | || |||||||||||||||||||||||||| |  | |||| || | ||||||||| ||| || |||| |  | |||||||||||||  |    
T  5509 ttttatccgctgcaattagaatctgaacatcacttcagaagctgaactctatcttctttctgatcagtgatttcagtatgagataacgaagaaaaagcta 5410  T
Q  101 acacaattcaacc 113  Q
    |||||||||||||    
T  5409 acacaattcaacc 5397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 4 - 93
Alignment:
Q  26 gaacatcacttcagaagttttaatctaactgcttctgatcaatgactttag--tagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    ||||||||||||||||||   | || | ||||||||||||| ||  |||||  ||||  ||||||||||||||| |||||||||||||||    
T  4 gaacatcacttcagaagtagaactcgatctgcttctgatcagtgtttttagattaggagaaaacgaagaaaaagtaaacacaattcaacc 93  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 21792 - 21822
Alignment:
Q  83 aaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||||||||||||||||||||||||||||||    
T  21792 aaaacgaagaaaaagaaaacacaattcaacc 21822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 44639 - 44745
Alignment:
Q  2 ttttatccgtttcatttagaatctgaacatcacttcagaagttttaatctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaa 101  Q
    ||||||||| | || ||||||| |||||||||||| || |||   | |||| |||||| |||||| ||| || ||||||  |||||||||||||||  ||    
T  44639 ttttatccgctgcacttagaatttgaacatcactttagcagtggaactctatctgcttttgatcagtgatttcagtaggagaaaacgaagaaaaagctaa 44738  T
Q  102 cacaatt 108  Q
    |||||||    
T  44739 cacaatt 44745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 1996 - 1956
Alignment:
Q  4 ttatccgtttcatttagaatctgaacatcacttcagaagtt 44  Q
    ||||||| | |||||||| ||||||||||||||||||||||    
T  1996 ttatccgctgcatttagactctgaacatcacttcagaagtt 1956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 113
Target Start/End: Complemental strand, 80651 - 80587
Alignment:
Q  49 tctaactgcttctgatcaatgactttagtagggaaaaacgaagaaaaagaaaacacaattcaacc 113  Q
    |||| |||| |||||||| |||||| ||||||  |||||||||||||||  ||||||||| ||||    
T  80651 tctatctgcatctgatcagtgacttcagtaggagaaaacgaagaaaaagctaacacaatttaacc 80587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University