View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_high_28 (Length: 287)
Name: NF16840_high_28
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 29841774 - 29841911
Alignment:
| Q |
14 |
gtggtggtgtgtaaaattgacttgtgaattgtagcgaaacaagtataatacaagcgcaaagtgtgtaaagaaaaacctatgtattttcactaagaggtgg |
113 |
Q |
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| T |
29841774 |
gtggttgtgtgtaaaattgacttgtgaattgtagcgaaacaagtataatacaagcacaaagtgtgtaaagaaaaacctatgtattttcacgaagaggtgg |
29841873 |
T |
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| Q |
114 |
ttttgtgattgaatggaatattcggaatgttgatcatc |
151 |
Q |
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| T |
29841874 |
ttttgtgattgaatgaaatattcggaatgttgatcatc |
29841911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 29841964 - 29842054
Alignment:
| Q |
149 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatatgaattgatttcatatacctaacctctgcatggagccattca |
239 |
Q |
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| T |
29841964 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatacgaattgatttcatatacctaacctctgcatggagccattca |
29842054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 29829712 - 29829573
Alignment:
| Q |
14 |
gtggtggtgtgtaaaattgacttgtgaattgtagcgaaacaagtataatacaagcgcaaagtgtgt--aaagaaaaacctatgtattttcactaagaggt |
111 |
Q |
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| T |
29829712 |
gtggttgtgtgtaaaattgacctgtgcattggggtgaaacaagtataatacaagcacaaagtgtgtggaaaaaaaaacctatgtattttcaccaagagtt |
29829613 |
T |
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| Q |
112 |
ggttttgtgattgaatggaatattcggaatgttgatcatc |
151 |
Q |
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| T |
29829612 |
ggttttgtggttgaatggaatattcagaatgttgatcatc |
29829573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 149 - 211
Target Start/End: Complemental strand, 29829509 - 29829447
Alignment:
| Q |
149 |
atcctccaagctacttttgtgattgagtacatggattccgctttttatatgaattgatttcat |
211 |
Q |
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| T |
29829509 |
atcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatttcat |
29829447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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