View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16840_high_3 (Length: 738)

Name: NF16840_high_3
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16840_high_3
NF16840_high_3
[»] chr3 (1 HSPs)
chr3 (63-720)||(1154060-1154717)
[»] chr7 (2 HSPs)
chr7 (271-623)||(29622475-29622827)
chr7 (34-101)||(29622904-29622971)
[»] chr5 (15 HSPs)
chr5 (253-617)||(35371076-35371440)
chr5 (261-591)||(35411242-35411572)
chr5 (261-647)||(35386596-35386982)
chr5 (286-591)||(35426021-35426326)
chr5 (286-470)||(35377062-35377246)
chr5 (16-110)||(35386341-35386435)
chr5 (275-474)||(35367462-35367661)
chr5 (261-591)||(35755427-35755757)
chr5 (16-109)||(35411002-35411095)
chr5 (35-108)||(35376760-35376833)
chr5 (35-108)||(35424019-35424092)
chr5 (16-108)||(35755143-35755235)
chr5 (478-647)||(23935846-23936012)
chr5 (16-108)||(35367189-35367281)
chr5 (508-580)||(35367680-35367752)
[»] chr1 (5 HSPs)
chr1 (263-590)||(10414954-10415281)
chr1 (16-189)||(10415370-10415548)
chr1 (275-537)||(10419893-10420155)
chr1 (16-108)||(10409759-10409851)
chr1 (16-108)||(10420343-10420435)
[»] chr2 (9 HSPs)
chr2 (285-632)||(30626650-30626997)
chr2 (418-632)||(30663709-30663923)
chr2 (418-632)||(30672389-30672603)
chr2 (424-488)||(28160440-28160504)
chr2 (285-362)||(30663603-30663680)
chr2 (285-362)||(30672283-30672360)
chr2 (35-101)||(30626419-30626485)
chr2 (35-101)||(30663370-30663436)
chr2 (35-101)||(30672050-30672116)
[»] chr8 (5 HSPs)
chr8 (299-434)||(15294352-15294487)
chr8 (299-434)||(15474721-15474856)
chr8 (31-108)||(15294093-15294170)
chr8 (31-108)||(15474462-15474539)
chr8 (331-453)||(13564902-13565024)


Alignment Details
Target: chr3 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 63 - 720
Target Start/End: Original strand, 1154060 - 1154717
Alignment:
Q  63 tacaattaaaggaacaataggatatattcctcctggtaaagttcttaaatccattaatagttactatctttcagaaatttagcattgctaatttattatt 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1154060 tacaattaaaggaacaataggatatattcctcctggtaaagttcttaaatccattaatagttactatctttcagaaatttggcattgctaatttattatt 1154159  T
Q  163 atttaaattagttatgaccatcaatgtgatatatatacgtatacacacaatatactccttcattattcctcccctaaatagttgtagtttttgtctgaaa 262  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154160 atttaaattagttatgaccatcaatgtgatatatatacatatacacacaatatactccttcattattcctcccctaaatagttgtagtttttgtctgaaa 1154259  T
Q  263 aagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154260 aagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 1154359  T
Q  363 tatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtc 462  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1154360 tatattttgtgagaatttaagcctatacgagttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgccgtttgtc 1154459  T
Q  463 gaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattgaa 562  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  1154460 gaagatcagacagaaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagagtttcctgctcatcgaa 1154559  T
Q  563 tgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaagatgtttagtaagta 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154560 tgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaagatgtttagtaagta 1154659  T
Q  663 ctatcaatcttcatgccatcatgatcctttcgaagcttctgtccaagagcagttggat 720  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1154660 ctatcaatcttcatgccatcatgatcctttcgaagcttctgtccaagagcagttggat 1154717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 271 - 623
Target Start/End: Complemental strand, 29622827 - 29622475
Alignment:
Q  271 ggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatatttt 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |  |||  || ||||    
T  29622827 ggaacaggtgttccagtatcaccacagggagatatctacagctttggcattcttctgttagagatgctcactggaaagagaccagcagataacatgtttt 29622728  T
Q  371 gtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatca 470  Q
    |||||||||||||||||||| | || ||||| ||||| ||| | |||||||| ||||||||||| ||    ||||| |||||  | ||||  |||||||     
T  29622727 gtgagaatttaagcctacacaaattctgtaagatgaagattccagaaggaattcttgagatagtggattcccgtttacttataccatttgctgaagatcg 29622628  T
Q  471 gacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattgaatgttgata 570  Q
    |||||| |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| ||||| | |||    
T  29622627 gacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctagaattggagttgcatgttctcaagagtttcctgctcatcgaatgctaata 29622528  T
Q  571 aaacatgttattgttaagttgaatgaaatcaaatcaaagattccatgctagga 623  Q
    ||| ||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  29622527 aaagatgttatagttaagttgaatgaaatcaaatcaaagtttccatgctagga 29622475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 29622971 - 29622904
Alignment:
Q  34 cattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||||| |||||| | | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  29622971 cattcaagtaatgatcaaattacttcttccacaattaagggaactataggatatgttcctcctggtaa 29622904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 7e-88; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 7e-88
Query Start/End: Original strand, 253 - 617
Target Start/End: Original strand, 35371076 - 35371440
Alignment:
Q  253 ttgtctgaaaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagac 352  Q
    |||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35371076 ttgtttgaaaaagagtacgggacaggtgttccagtatcaccacatggagatatctatagctttgggattcttctgttagagatgctcaccggaaagagac 35371175  T
Q  353 caaccaatagtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttat 452  Q
    ||||  |||  || |||| ||||| | |||| || || || || || |||||||||||| | |||||||||||||||||||| ||   || ||||||| |    
T  35371176 caacagataacatgttttctgagagtctaagtctgcatgaattctgcaaaatgaaaattccagaaggaatccttgagatagtagattcacatttgctttt 35371275  T
Q  453 gtcgtttgtcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcct 552  Q
      | ||||  |||||| | ||||| |||||||||||||||||||  || ||||||||||||||||||  |||||||||||||||| |||||| || ||||    
T  35371276 accatttgctgaagatgatacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctgcaattggagttgcatgttctgaagagtctcct 35371375  T
Q  553 gctcattgaatgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatg 617  Q
    |||||| |||||||||||||| ||| ||| | ||| ||||||||||||||||||| | |||||||    
T  35371376 gctcatcgaatgttgataaaagatgctatagctaatttgaatgaaatcaaatcaatgtttccatg 35371440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 261 - 591
Target Start/End: Original strand, 35411242 - 35411572
Alignment:
Q  261 aaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaat 360  Q
    |||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||| |||| | |||||||||||| |||    
T  35411242 aaaagagtacggagaaggtgttccagtatcaccacggggagatatctacagctttgggattcttctactagagatgttcactgcaaagagaccaacaaat 35411341  T
Q  361 agtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttg 460  Q
    |  |  |||| ||||| | |||| ||||| || || || |||||||||||||| |||||||||||||||||||| ||   || ||||||| |  | ||||    
T  35411342 aacaacttttctgagagtctaagtctacatgaattctgcaaaatgaaaatttcagaaggaatccttgagatagtagattcacatttgcttttaccatttg 35411441  T
Q  461 tcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattg 560  Q
      |||||| ||||||| |||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||  |||| | ||||||||||||| |    
T  35411442 ctgaagatgagacagggattgtggaaaacaagattaggaattgtttggtgatgtttgctagaatcggagttgcatgctctgacgagtttcctgctcatcg 35411541  T
Q  561 aatgttgataaaacatgttattgttaagttg 591  Q
    ||||||||||||| ||||||| |||||||||    
T  35411542 aatgttgataaaagatgttatcgttaagttg 35411572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 261 - 647
Target Start/End: Original strand, 35386596 - 35386982
Alignment:
Q  261 aaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaat 360  Q
    |||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||| |||    
T  35386596 aaaagagtacggagaaggtgttccagtatcaccaaagggagatatctacagctttgggattcttctactagagatgttcaccggaaagagaccaacaaat 35386695  T
Q  361 agtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttg 460  Q
    |  |  |||| |||||  ||||| || ||  | || || ||||| |||||| | |||| ||||||||||||||| ||    |  |||||| |  | ||||    
T  35386696 aacaacttttctgagagattaagtctgcataaattctgcaaaataaaaattccagaagcaatccttgagatagtagattctcaattgctttttccatttg 35386795  T
Q  461 tcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattg 560  Q
      |||||| |||  || |||||||||||||||||||  || ||||||||||||||||||  ||||||||| |||||| || ||| | |  || ||||| |    
T  35386796 ctgaagatgagatggggattgtggaaaacaagattaggaattgtttggtgatgtttgctgcaattggagtcgcatgttctaaagaggtcactactcatcg 35386895  T
Q  561 aatgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaa 647  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||||||||||||||  ||||| |||||||||||||    
T  35386896 aatgttgataaaagatgttatagttaagttgaatcaaatcaaatcaaagtttccatgctaggaaccgctgctactgtgataagaaaa 35386982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 286 - 591
Target Start/End: Original strand, 35426021 - 35426326
Alignment:
Q  286 gtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcc 385  Q
    ||||||||||||||||||||||| |||| ||| ||| |||||||||||||||| || ||||||||||||||  |||  || |||| ||||||||||||      
T  35426021 gtatcaccacagggagatatctatagctatggaattgttctgttagagatgcttactggaaagagaccaacagataacatgttttatgagaatttaagtt 35426120  T
Q  386 tacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtgga 485  Q
    ||||| | || ||||| |||| |||| |||||||||| |||||  |||| ||   | | ||||||||||| ||||  |||||||| |||  | || ||||    
T  35426121 tacacaaattctgtaagatgagaattcctgaaggaattcttgatgtagtggattcatgcttgcttatgtcatttgctgaagatcaaacacaagttatgga 35426220  T
Q  486 aaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattgaatgttgataaaacatgttattgtt 585  Q
    |||||| || ||  ||||||| ||||||||||||| ||| ||| |||||||| ||||||  |||||| ||||  ||||| | | |||| ||||||| |||    
T  35426221 aaacaacataaaggagtgtttagtgatgtttgctaaaataggaattgcatgttctgaagaatttcctactcagagaatgctcacaaaagatgttatagtt 35426320  T
Q  586 aagttg 591  Q
    ||||||    
T  35426321 aagttg 35426326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 286 - 470
Target Start/End: Original strand, 35377062 - 35377246
Alignment:
Q  286 gtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcc 385  Q
    ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| || ||||||||||||||  |||  || |||||||||||| |||||     
T  35377062 gtatcaccacagggagatatctatagctatggaattcttctgttagagatgcttactggaaagagaccaacagataacatcttttgtgagaatctaagct 35377161  T
Q  386 tacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatca 470  Q
    ||||| | |||||||| ||||||||| | |||||||| ||||| ||||| || | | | |||||| |||| ||||| ||||||||    
T  35377162 tacacaaattttgtaagatgaaaattccagaaggaattcttgatatagtggatccatgcttgcttgtgtcatttgttgaagatca 35377246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 35386341 - 35386435
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttcttaa 110  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  35386341 attcttggaaccacagagcattcaagtaaagatcaagttatttcctctactattaaaggaactataggatatattcctcctggtaaagttcttaa 35386435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 275 - 474
Target Start/End: Original strand, 35367462 - 35367661
Alignment:
Q  275 caggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtga 374  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||||||||| ||||||||||||||  |||| || ||||| ||    
T  35367462 caggtgttccagtatctccacagggagatgtttacagctttgggattctactgttagagatgctcactggaaagagaccaacagatagcatgttttgcga 35367561  T
Q  375 gaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagaca 474  Q
    |||| | ||||| ||| | || ||||| ||||||||| | | || ||| ||||||||||| ||   || |||||||||| | ||| |  |||||||||||    
T  35367562 gaatcttagccttcacaaattctgtaagatgaaaattcccgtagaaattcttgagatagtggattcacatttgcttatgccatttcttaaagatcagaca 35367661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 261 - 591
Target Start/End: Original strand, 35755427 - 35755757
Alignment:
Q  261 aaaagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaat 360  Q
    ||||||||| ||| |||||| ||| ||||||||  |||||||||| ||||||| ||||||||| ||||| || ||||| |||||||||||||||||  ||    
T  35755427 aaaagagtatggagcaggtggtccggtatcaccggagggagatatttacagctatgggattctgctgttggaaatgcttaccggaaagagaccaacagat 35755526  T
Q  361 agtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttg 460  Q
    |  || |||| ||||||| |||  |||||| | || ||||| |||| |||| |||||| ||| |||||| | || ||    ||||  |||||  | || |    
T  35755527 aacatgttttatgagaatctaactctacacaaattctgtaagatgagaattcctgaagaaattcttgaggttgtagattcccgttgccttattccattgg 35755626  T
Q  461 tcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattg 560  Q
    | |||||||||||| || ||||||||||||| || ||  ||||| | ||||||||||||| ||| |||||||||||| ||||||  |||||| ||||  |    
T  35755627 ttgaagatcagacacgagttgtggaaaacaacataaaggagtgtctagtgatgtttgctaaaataggagttgcatgttctgaagaatttcctactcagag 35755726  T
Q  561 aatgttgataaaacatgttattgttaagttg 591  Q
    |||| | | |||| |||||||  ||||||||    
T  35755727 aatgctcacaaaagatgttataattaagttg 35755757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 35411002 - 35411095
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctta 109  Q
    ||||||||| |||| ||||||||||||||||||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  35411002 attcttggaaccacagagcattcaagtaaagatcaagttattttttctacaattaaaggaactataggatatattcctcctggtaaagctctta 35411095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 35376760 - 35376833
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  35376760 attcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt 35376833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 35424019 - 35424092
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  35424019 attcaagtaaaaatcaagttatttcctccacaattaaaggaactataggatatattcctcctggtaaagttctt 35424092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 35755143 - 35755235
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||| |||||| || || |||||||||||||||||||| | ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  35755143 attcatggagctacagaacattcaagtaaagatcaagttaattcctctacaattaagggaactataggatatgttcctcctggtaaagttctt 35755235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 478 - 647
Target Start/End: Complemental strand, 23936012 - 23935846
Alignment:
Q  478 attgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattgaatgttgataaaacatg 577  Q
    |||||||||||||||||||  | || ||||||||||||||||||||||| |||||||| |    ||| |   | ||||||   ||||   |||||| |||    
T  23936012 attgtggaaaacaagattaggaggtttttggtgatgtttgctagaattgaagttgcatttt---aagtgccccttgctcaacaaatggccataaaagatg 23935916  T
Q  578 ttattgttaagttgaatgaaatcaaatcaaagattccatgctaggaaccattgctattgtgataagaaaa 647  Q
    |||  |||||||||| |||||| ||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  23935915 ttacagttaagttgagtgaaataaaatcaaagtttccatgctaggaacaattgctactgtgataagaaaa 23935846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 35367189 - 35367281
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||| |||  || |||||||||||||||||||| | ||| || |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  35367189 attcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaattaagggaactataggatatgttcctcctggtaaagttctt 35367281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 580
Target Start/End: Original strand, 35367680 - 35367752
Alignment:
Q  508 gtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattgaatgttgataaaacatgtta 580  Q
    ||||||||||||| ||| |||||||||||| | ||||  || ||| ||||| |||||||||||||| ||||||    
T  35367680 gtgatgtttgctaaaataggagttgcatgttccgaagaattccctactcatcgaatgttgataaaaaatgtta 35367752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 1e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 263 - 590
Target Start/End: Complemental strand, 10415281 - 10414954
Alignment:
Q  263 aagagtacggaacaggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||     
T  10415281 aagagtacggaacaggtgttccagtatcaccacagggagatatctatagctttgggattcttctgttagagatgctcactggaaagagaccaacaaataa 10415182  T
Q  363 tatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtc 462  Q
     || |||| ||||| |  ||| ||||| || || || |||||||||||| | ||||||||||| |||||||| ||   ||  || ||| || | |||| |    
T  10415181 catgttttctgagagtcaaagtctacatgaattctgcaaaatgaaaattccagaaggaatcctcgagatagtagattcacaattacttttgccatttgcc 10415082  T
Q  463 gaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattgaa 562  Q
    |||| | |||| || ||||||||||| |||||||| ||||||||||||||||||| |  ||| |||||||||||| ||||||   ||||| ||||| |||    
T  10415081 gaagttgagacggggattgtggaaaataagattaagaagtgtttggtgatgtttggtgcaatcggagttgcatgttctgaagaagttccttctcatcgaa 10414982  T
Q  563 tgttgataaaacatgttattgttaagtt 590  Q
    ||||||||||| ||||||| | ||||||    
T  10414981 tgttgataaaagatgttatagataagtt 10414954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 10415548 - 10415370
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttcttaa----- 110  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||         
T  10415548 attcttggagccacagagcattcaagtaaagatcaagtcatttcctctactattaaaggaactataggatatattcctactggtaaagctcttaacttat 10415449  T
Q  111 atccattaatagttactatctttcagaaatttagcattgctaatttattattatttaaattagttatgaccatcaatgt 189  Q
    |||||||  | |||| || | || |||||||||||| |||||||||||| ||||||| || || ||||||| |||||||    
T  10415448 atccatttttggttagtacccttaagaaatttagcaatgctaatttattgttatttatatcagatatgaccctcaatgt 10415370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 275 - 537
Target Start/End: Complemental strand, 10420155 - 10419893
Alignment:
Q  275 caggtgttccagtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtga 374  Q
    |||||||||||||||| || ||||||||| | |||||||||||||||||  |||||||||||||||| ||||||||||||||  |||  || ||| |  |    
T  10420155 caggtgttccagtatctccccagggagatgtttacagctttgggattctcttgttagagatgctcactggaaagagaccaacagataacatgtttagcca 10420056  T
Q  375 gaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagaca 474  Q
    |||| | ||||| ||| | || ||||| ||||||||| ||| || ||| ||||||||||| ||   || |||||||||| | |||    |||||||||||    
T  10420055 gaatcttagccttcacaaattctgtaagatgaaaattcctgtagaaattcttgagatagtggattcacatttgcttatgccatttcctaaagatcagaca 10419956  T
Q  475 ggaattgtggaaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgt 537  Q
      |||   |||||| || |||||  ||||| | ||||||||||||  ||| ||||||||||||    
T  10419955 ctaatgacggaaaaaaacattaaggagtgtctagtgatgtttgctgaaataggagttgcatgt 10419893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 10409851 - 10409759
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||| |||||| || || |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  10409851 attcgtggagctacagaacattcaagtaaagatcaagttatttcctctacaattaagggaactataggatatgttcctcccggtaaagttctt 10409759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 10420435 - 10420343
Alignment:
Q  16 attcttggagccaccgagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    ||||||||| |||  || |||||||||||||||||||| | ||| || ||||| || ||||  ||||||||| ||||||||||||||||||||    
T  10420435 attcttggaaccagagaccattcaagtaaagatcaagttaattcttccacaatcaagggaagtataggatatgttcctcctggtaaagttctt 10420343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 285 - 632
Target Start/End: Original strand, 30626650 - 30626997
Alignment:
Q  285 agtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagc 384  Q
    ||||||||| || || |||||||||||||  ||||||||||| ||||| |||||||| ||||| |||||||| ||||| || |||| ||  | | | ||     
T  30626650 agtatcacctcatggcgatatctacagctacgggattcttctcttagaaatgctcactggaaaaagaccaacaaatagcatgttttctggaagtctcagt 30626749  T
Q  385 ctacacgatttttgtaaaatgaaaatttctgaaggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtgg 484  Q
    ||||| |  || ||||| |||||| || | || |||||| |||||||||| ||   || ||||||| || | ||||  |||||| ||||||| |||||||    
T  30626750 ctacatgcattctgtaagatgaaagttccagatggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtgg 30626849  T
Q  485 aaaacaagattaaaaagtgtttggtgatgtttgctagaattggagttgcatgtactgaagggtttcctgctcattgaatgttgataaaacatgttattgt 584  Q
    ||||||||||||  || || || ||||||||||||| |||||||||||||||| | |||| ||||||  || || |||||  ||||||| ||||||| |     
T  30626850 aaaacaagattaggaattgcttagtgatgtttgctataattggagttgcatgttcagaagagtttccatctaatcgaatgccgataaaagatgttatagc 30626949  T
Q  585 taagttgaatgaaatcaaatcaaagattccatgctaggaaccattgct 632  Q
     |||||||||||||||||||||| | ||||||||||||| || |||||    
T  30626950 aaagttgaatgaaatcaaatcaatgtttccatgctaggatccgttgct 30626997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 418 - 632
Target Start/End: Original strand, 30663709 - 30663923
Alignment:
Q  418 ggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttg 517  Q
    |||||| |||||||||| ||   || ||||||| || | ||||  |||||| ||||||| |||||||||||||||||||  || || || ||||||||||    
T  30663709 ggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagtgatgtttg 30663808  T
Q  518 ctagaattggagttgcatgtactgaagggtttcctgctcattgaatgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatg 617  Q
    ||| |||||||||||||||| |||||| ||||||  || || |||||  ||||||| ||||||| |  |||||||||||||||||||||| | |||||||    
T  30663809 ctataattggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatg 30663908  T
Q  618 ctaggaaccattgct 632  Q
    | |||| || |||||    
T  30663909 cgaggatccgttgct 30663923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 418 - 632
Target Start/End: Original strand, 30672389 - 30672603
Alignment:
Q  418 ggaatccttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtggaaaacaagattaaaaagtgtttggtgatgtttg 517  Q
    |||||| |||||||||| ||   || ||||||| || | ||||  |||||| ||||||| |||||||||||||||||||  || || || ||||||||||    
T  30672389 ggaatctttgagatagtagattcacatttgcttttgccatttgctgaagatgagacagggattgtggaaaacaagattaggaattgcttagtgatgtttg 30672488  T
Q  518 ctagaattggagttgcatgtactgaagggtttcctgctcattgaatgttgataaaacatgttattgttaagttgaatgaaatcaaatcaaagattccatg 617  Q
    ||| |||||||||||||||| |||||| ||||||  || || |||||  ||||||| ||||||| |  |||||||||||||||||||||| | |||||||    
T  30672489 ctataattggagttgcatgttctgaagagtttccatcttatcgaatgccgataaaagatgttatagcaaagttgaatgaaatcaaatcaatgtttccatg 30672588  T
Q  618 ctaggaaccattgct 632  Q
    | |||| || |||||    
T  30672589 cgaggatccgttgct 30672603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 28160504 - 28160440
Alignment:
Q  424 cttgagatagtcgaccaacgtttgcttatgtcgtttgtcgaagatcagacaggaattgtggaaaa 488  Q
    ||||||||||| |||||| ||||||||||| ||| || | |||||||||||||||||||||||||    
T  28160504 cttgagatagtggaccaatgtttgcttatgccgtatggccaagatcagacaggaattgtggaaaa 28160440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 30663603 - 30663680
Alignment:
Q  285 agtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 362  Q
    ||||||||| || || |||||||||||||  || |||||||| ||||| |||||||| |||||||||||||| |||||    
T  30663603 agtatcacctcatggtgatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatag 30663680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 285 - 362
Target Start/End: Original strand, 30672283 - 30672360
Alignment:
Q  285 agtatcaccacagggagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatag 362  Q
    ||||||||| || || |||||||||||||  || |||||||| ||||| |||||||| |||||||||||||| |||||    
T  30672283 agtatcacctcatggtgatatctacagctacggaattcttctattagaaatgctcactggaaagagaccaacaaatag 30672360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 30626419 - 30626485
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  30626419 attcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30626485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 30663370 - 30663436
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  30663370 attcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30663436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 30672050 - 30672116
Alignment:
Q  35 attcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaa 101  Q
    ||||||||  ||||||||| | ||| || |||||||| ||||| ||||||||| |||||||||||||    
T  30672050 attcaagtgtagatcaagttaattcgtccacaattaagggaactataggatatgttcctcctggtaa 30672116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 299 - 434
Target Start/End: Original strand, 15294352 - 15294487
Alignment:
Q  299 gagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctacacgatttttg 398  Q
    ||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |||| |||||  | |||||    
T  15294352 gagatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttg 15294451  T
Q  399 taaaatgaaaatttctgaaggaatccttgagatagt 434  Q
    ||| ||||||||| | |||||||| |||||||||||    
T  15294452 taagatgaaaattccagaaggaattcttgagatagt 15294487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 299 - 434
Target Start/End: Original strand, 15474721 - 15474856
Alignment:
Q  299 gagatatctacagctttgggattcttctgttagagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctacacgatttttg 398  Q
    ||||||||||||||| ||||||||| ||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |||| |||||  | |||||    
T  15474721 gagatatctacagctatgggattctgctgttggaaatgctcaccggaaagagaccaacaaatagcatgttctgtgagaatctaagtctacagaaattttg 15474820  T
Q  399 taaaatgaaaatttctgaaggaatccttgagatagt 434  Q
    ||| ||||||||| | |||||||| |||||||||||    
T  15474821 taagatgaaaattccagaaggaattcttgagatagt 15474856  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 15294093 - 15294170
Alignment:
Q  31 gagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||||||||||||||||| |||| ||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  15294093 gagcattcaagtaaagataaagttattgcctctaagattaaaggaactataggatatattcctcctggtaaagttctt 15294170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 15474462 - 15474539
Alignment:
Q  31 gagcattcaagtaaagatcaagtaatttcctctacaattaaaggaacaataggatatattcctcctggtaaagttctt 108  Q
    |||||||||||||||||| |||| ||| ||||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  15474462 gagcattcaagtaaagataaagttattgcctctaagattaaaggaactataggatatattcctcctggtaaagttctt 15474539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 331 - 453
Target Start/End: Original strand, 13564902 - 13565024
Alignment:
Q  331 gagatgctcaccggaaagagaccaaccaatagtatattttgtgagaatttaagcctacacgatttttgtaaaatgaaaatttctgaaggaatccttgaga 430  Q
    ||||||||||||||||||||||||||  |||  || ||||  ||   | |||  |||||| |||  ||||| ||||||||| | ||||||||||||| ||    
T  13564902 gagatgctcaccggaaagagaccaacggatatcatgttttccgacggtctaaatctacacaattactgtaagatgaaaattccagaaggaatccttgcga 13565001  T
Q  431 tagtcgaccaacgtttgcttatg 453  Q
    |||| || |||||||||||||||    
T  13565002 tagtggatcaacgtttgcttatg 13565024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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