View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16840_high_30 (Length: 279)

Name: NF16840_high_30
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16840_high_30
NF16840_high_30
[»] chr7 (30 HSPs)
chr7 (10-261)||(26042848-26043098)
chr7 (1-51)||(41843099-41843149)
chr7 (1-52)||(10883845-10883896)
chr7 (1-52)||(13034511-13034562)
chr7 (1-52)||(13259076-13259127)
chr7 (1-52)||(13266416-13266467)
chr7 (1-44)||(19237717-19237760)
chr7 (6-52)||(15087986-15088032)
chr7 (6-52)||(19711688-19711734)
chr7 (6-52)||(22579858-22579904)
chr7 (6-52)||(30946034-30946080)
chr7 (3-44)||(13473179-13473220)
chr7 (1-49)||(39285180-39285228)
chr7 (1-52)||(13261289-13261340)
chr7 (1-52)||(13683030-13683081)
chr7 (6-49)||(23280631-23280674)
chr7 (1-52)||(30025367-30025418)
chr7 (1-52)||(44466527-44466578)
chr7 (1-39)||(12367424-12367462)
chr7 (6-52)||(16557264-16557310)
chr7 (6-52)||(16608352-16608398)
chr7 (6-52)||(33692376-33692422)
chr7 (6-52)||(48237516-48237562)
chr7 (3-52)||(4494010-4494059)
chr7 (3-52)||(9098903-9098952)
chr7 (3-52)||(9099709-9099758)
chr7 (1-50)||(13302293-13302342)
chr7 (3-52)||(14187124-14187173)
chr7 (8-52)||(331090-331134)
chr7 (1-33)||(16310600-16310632)
[»] scaffold0530 (1 HSPs)
scaffold0530 (1-52)||(2639-2690)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-52)||(32408-32459)
[»] chr2 (27 HSPs)
chr2 (1-52)||(18431555-18431606)
chr2 (1-52)||(41122303-41122354)
chr2 (1-52)||(22455576-22455627)
chr2 (1-52)||(24575467-24575518)
chr2 (1-52)||(24851280-24851331)
chr2 (1-52)||(25188831-25188882)
chr2 (3-52)||(18702175-18702224)
chr2 (1-52)||(17963884-17963935)
chr2 (1-52)||(20569367-20569418)
chr2 (1-52)||(22257633-22257684)
chr2 (1-52)||(23184919-23184970)
chr2 (1-52)||(23596182-23596233)
chr2 (1-52)||(25037878-25037929)
chr2 (1-44)||(25828593-25828636)
chr2 (1-52)||(40781908-40781959)
chr2 (9-52)||(6574716-6574759)
chr2 (1-52)||(19539848-19539899)
chr2 (6-49)||(22188725-22188768)
chr2 (1-52)||(26367025-26367076)
chr2 (1-52)||(30557939-30557990)
chr2 (1-52)||(39038258-39038309)
chr2 (6-52)||(23234444-23234490)
chr2 (6-44)||(38780832-38780870)
chr2 (3-52)||(10010368-10010417)
chr2 (6-43)||(13964602-13964639)
chr2 (3-52)||(26623070-26623119)
chr2 (3-52)||(28141218-28141267)
[»] chr3 (32 HSPs)
chr3 (3-52)||(14063660-14063709)
chr3 (1-52)||(29952108-29952159)
chr3 (1-52)||(30001262-30001313)
chr3 (3-52)||(26418347-26418396)
chr3 (1-52)||(13939332-13939383)
chr3 (1-52)||(19250023-19250074)
chr3 (1-52)||(49643433-49643484)
chr3 (6-52)||(14968803-14968849)
chr3 (6-52)||(22128516-22128562)
chr3 (6-52)||(38178316-38178362)
chr3 (6-52)||(47207144-47207190)
chr3 (6-52)||(47406096-47406142)
chr3 (3-52)||(16032034-16032083)
chr3 (3-52)||(16659263-16659312)
chr3 (3-52)||(20645592-20645641)
chr3 (3-52)||(20724527-20724576)
chr3 (8-52)||(11189454-11189498)
chr3 (1-52)||(14393676-14393727)
chr3 (1-52)||(19889585-19889636)
chr3 (6-49)||(28581545-28581588)
chr3 (9-52)||(53057402-53057445)
chr3 (6-52)||(1728689-1728735)
chr3 (6-52)||(11222256-11222302)
chr3 (6-52)||(11223004-11223050)
chr3 (6-52)||(25398928-25398974)
chr3 (6-52)||(40799337-40799383)
chr3 (3-52)||(12967747-12967796)
chr3 (7-52)||(20628106-20628151)
chr3 (2-39)||(22804708-22804745)
chr3 (1-33)||(3238128-3238160)
chr3 (1-33)||(12726925-12726957)
chr3 (3-39)||(52919904-52919940)
[»] scaffold0324 (1 HSPs)
scaffold0324 (1-52)||(9395-9446)
[»] scaffold0026 (1 HSPs)
scaffold0026 (1-52)||(7362-7413)
[»] scaffold0022 (3 HSPs)
scaffold0022 (1-52)||(158548-158599)
scaffold0022 (1-52)||(36867-36918)
scaffold0022 (1-52)||(134927-134978)
[»] scaffold0004 (3 HSPs)
scaffold0004 (1-52)||(378169-378220)
scaffold0004 (3-52)||(244902-244951)
scaffold0004 (1-52)||(219677-219728)
[»] chr8 (20 HSPs)
chr8 (1-52)||(19153462-19153513)
chr8 (1-52)||(19957008-19957059)
chr8 (1-52)||(20256183-20256234)
chr8 (3-52)||(15934331-15934380)
chr8 (1-52)||(19942665-19942716)
chr8 (6-52)||(23264296-23264342)
chr8 (6-52)||(33560887-33560933)
chr8 (3-52)||(18679246-18679295)
chr8 (3-52)||(18718435-18718484)
chr8 (1-52)||(12758407-12758458)
chr8 (1-52)||(16681923-16681974)
chr8 (6-52)||(17442490-17442536)
chr8 (1-39)||(17526419-17526457)
chr8 (6-44)||(21932315-21932353)
chr8 (10-52)||(26832514-26832556)
chr8 (6-52)||(39692968-39693014)
chr8 (3-52)||(18772124-18772173)
chr8 (6-51)||(43773552-43773597)
chr8 (1-33)||(25163500-25163532)
chr8 (1-41)||(43644326-43644366)
[»] chr5 (12 HSPs)
chr5 (1-52)||(12353447-12353498)
chr5 (1-52)||(19536950-19537001)
chr5 (1-52)||(25097479-25097530)
chr5 (1-52)||(25155449-25155500)
chr5 (1-52)||(21100355-21100406)
chr5 (1-52)||(26783787-26783838)
chr5 (6-52)||(31487674-31487720)
chr5 (1-50)||(643355-643404)
chr5 (1-52)||(21072889-21072940)
chr5 (1-52)||(22000680-22000731)
chr5 (1-52)||(23880499-23880550)
chr5 (2-39)||(23413640-23413677)
[»] chr4 (23 HSPs)
chr4 (1-52)||(6641115-6641166)
chr4 (1-52)||(23749955-23750006)
chr4 (3-52)||(8686070-8686119)
chr4 (2-52)||(19912508-19912558)
chr4 (6-52)||(20976892-20976938)
chr4 (6-52)||(39420335-39420381)
chr4 (3-52)||(15015014-15015063)
chr4 (3-52)||(17788668-17788717)
chr4 (3-52)||(41115385-41115434)
chr4 (1-52)||(3395081-3395132)
chr4 (1-52)||(11900622-11900673)
chr4 (1-52)||(14605533-14605584)
chr4 (1-52)||(37986240-37986291)
chr4 (10-52)||(17539840-17539882)
chr4 (6-52)||(22676153-22676199)
chr4 (6-52)||(38513342-38513388)
chr4 (6-52)||(45832821-45832867)
chr4 (6-52)||(56034007-56034053)
chr4 (3-52)||(11915135-11915184)
chr4 (1-34)||(12600191-12600224)
chr4 (3-52)||(55379744-55379793)
chr4 (6-42)||(19665801-19665837)
chr4 (8-44)||(29120802-29120838)
[»] chr1 (25 HSPs)
chr1 (1-52)||(12625146-12625197)
chr1 (1-52)||(22202327-22202378)
chr1 (1-52)||(33256943-33256994)
chr1 (1-52)||(33277115-33277166)
chr1 (1-52)||(48703699-48703750)
chr1 (1-53)||(21192456-21192508)
chr1 (1-52)||(26702722-26702773)
chr1 (1-44)||(28492883-28492926)
chr1 (1-52)||(30892529-30892580)
chr1 (6-52)||(1577306-1577352)
chr1 (6-52)||(2266538-2266584)
chr1 (6-52)||(16235901-16235947)
chr1 (6-52)||(35039606-35039652)
chr1 (6-52)||(36133643-36133689)
chr1 (6-52)||(38281824-38281870)
chr1 (6-52)||(38282005-38282051)
chr1 (1-52)||(7309254-7309305)
chr1 (1-52)||(14293216-14293267)
chr1 (6-52)||(1899786-1899832)
chr1 (6-52)||(22600781-22600827)
chr1 (6-52)||(23037100-23037146)
chr1 (6-52)||(32786533-32786579)
chr1 (3-52)||(10756863-10756912)
chr1 (3-52)||(22427930-22427979)
chr1 (4-52)||(22153296-22153344)
[»] scaffold0315 (1 HSPs)
scaffold0315 (2-52)||(8098-8148)
[»] chr6 (21 HSPs)
chr6 (1-51)||(15301652-15301702)
chr6 (1-44)||(13601604-13601647)
chr6 (1-52)||(14101099-14101150)
chr6 (1-44)||(14732785-14732828)
chr6 (1-52)||(16528748-16528799)
chr6 (1-52)||(20113298-20113349)
chr6 (6-52)||(15532288-15532334)
chr6 (6-51)||(21234599-21234644)
chr6 (8-52)||(9717285-9717329)
chr6 (1-52)||(15986791-15986842)
chr6 (1-52)||(16914862-16914913)
chr6 (5-52)||(19470108-19470155)
chr6 (1-52)||(19623416-19623467)
chr6 (9-52)||(20731367-20731410)
chr6 (6-52)||(13435324-13435370)
chr6 (6-52)||(17317157-17317203)
chr6 (6-52)||(17381017-17381063)
chr6 (6-52)||(18377882-18377928)
chr6 (1-35)||(29538049-29538083)
chr6 (3-52)||(19085597-19085646)
chr6 (1-33)||(24116264-24116296)
[»] scaffold1281 (1 HSPs)
scaffold1281 (1-52)||(2007-2058)
[»] scaffold0359 (1 HSPs)
scaffold0359 (6-52)||(6314-6360)
[»] scaffold0217 (1 HSPs)
scaffold0217 (6-52)||(18472-18518)
[»] scaffold0364 (1 HSPs)
scaffold0364 (7-52)||(5660-5705)
[»] scaffold0205 (1 HSPs)
scaffold0205 (7-52)||(564-609)
[»] scaffold0047 (1 HSPs)
scaffold0047 (3-52)||(8074-8123)
[»] scaffold0040 (1 HSPs)
scaffold0040 (3-52)||(2681-2730)
[»] scaffold1657 (1 HSPs)
scaffold1657 (1-52)||(1279-1330)
[»] scaffold0371 (1 HSPs)
scaffold0371 (5-52)||(13808-13855)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-52)||(1097-1148)
[»] scaffold0193 (1 HSPs)
scaffold0193 (1-52)||(16751-16802)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-52)||(2669-2720)
[»] scaffold0081 (1 HSPs)
scaffold0081 (1-52)||(13481-13532)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-52)||(83833-83880)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-52)||(211794-211845)
[»] scaffold0859 (1 HSPs)
scaffold0859 (6-52)||(2422-2468)
[»] scaffold0037 (1 HSPs)
scaffold0037 (10-52)||(76691-76733)
[»] scaffold0003 (1 HSPs)
scaffold0003 (6-52)||(90680-90726)
[»] scaffold0426 (1 HSPs)
scaffold0426 (15-52)||(13083-13120)
[»] scaffold0273 (1 HSPs)
scaffold0273 (3-52)||(5130-5179)
[»] scaffold0116 (1 HSPs)
scaffold0116 (3-52)||(21628-21677)
[»] scaffold0064 (1 HSPs)
scaffold0064 (3-52)||(44483-44532)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-33)||(9402-9434)
[»] scaffold0084 (1 HSPs)
scaffold0084 (1-33)||(48770-48802)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 261
Target Start/End: Original strand, 26042848 - 26043098
Alignment:
Q  10 aatatctgattacaagtgctcactgttaaaactagaaagagacaatgatgtgagaaatttgagccgaaaaagttgtttaaaatgttttgtataagtacat 109  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26042848 aatatctgattacaactgctcactattaaaactagcaagagacaatgatgtgagaaatttgagccgaaaaagttgtttaaaatgttttgtataagtacat 26042947  T
Q  110 agattattgatgtgtatggctcatatttgctaaattatatatagttgtgttggacaagtttgcttgttgagattcgaagcttcttaaatatcttttgctt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  26042948 agattattgatgtgtatggctcatatttgctaaattatatatagctgtgttcgacaagtttgcttgttgagattcgaagcttcttaaatatcttttgc-t 26043046  T
Q  210 tctcttcctttttgcatacacacaatatttcattttcaagaaagaatagtgt 261  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26043047 tctcttcctttttgcatacacgcaatatttcattttcaagaaagaatagtgt 26043098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 41843149 - 41843099
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagaga 51  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  41843149 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagaga 41843099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10883896 - 10883845
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||| |||||||    
T  10883896 ctaaaatgtaatatttgattacaactgctcactgctaaaactagcaagagac 10883845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13034562 - 13034511
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  13034562 ctaaaatgtaatatctgattacaacttctcactgctaaaactagcaagagac 13034511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13259127 - 13259076
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||||||||  ||| |||||||    
T  13259127 ctaaaatgtaatatctgattacaactgctcactgttaaacttagcaagagac 13259076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13266467 - 13266416
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||||||||  ||| |||||||    
T  13266467 ctaaaatgtaatatctgattacaactgctcactgttaaacttagcaagagac 13266416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19237760 - 19237717
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  19237760 ctaaaatgtaatatctgattacaattgctcactgctaaaactag 19237717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 15087986 - 15088032
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  15087986 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 15088032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 19711734 - 19711688
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  19711734 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 19711688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 22579904 - 22579858
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  22579904 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 22579858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 30946080 - 30946034
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  30946080 atgtaatatctgattacaactgctcactgctaaaactagcaagagac 30946034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 13473220 - 13473179
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    |||||||||||||||||||||| ||||||||| |||||||||    
T  13473220 aaaatgtaatatctgattacaactgctcactgctaaaactag 13473179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 39285228 - 39285180
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaaga 49  Q
    |||||||||||||||||||||||| ||||||||  ||||||||| ||||    
T  39285228 ctaaaatgtaatatctgattacaactgctcactactaaaactagcaaga 39285180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13261340 - 13261289
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| |||| |||||||||  ||| |||||||    
T  13261340 ctaaaatgtaatatctgattacaactgcttactgttaaacttagcaagagac 13261289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13683030 - 13683081
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||| ||| |||||| || ||||||||| |||||||    
T  13683030 ctaaaatgtaatatctgattgcaactgctcattgctaaaactaggaagagac 13683081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 23280674 - 23280631
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaaga 49  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  23280674 atgtaatatctgattacaattgctcactgctaaaactagcaaga 23280631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30025367 - 30025418
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  30025367 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 30025418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 44466527 - 44466578
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  44466527 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 44466578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 12367462 - 12367424
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaa 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  12367462 ctaaaatgtaatatctgattacaactgctcactgctaaa 12367424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 16557310 - 16557264
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||||    
T  16557310 atgtaatatctgattacaattgctcattgctaaaactagcaagagac 16557264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 16608352 - 16608398
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| |||||| || ||||||||| |||||||    
T  16608352 atgtaatatctgattacaattgctcattgctaaaactagcaagagac 16608398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 33692422 - 33692376
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| || |||||| ||||||||| |||||||    
T  33692422 atgtaatatctgattacaattgatcactgctaaaactagcaagagac 33692376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 48237562 - 48237516
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||  ||||||||| ||||||||| |||||||    
T  48237562 atgtaatatctgattacagttgctcactgctaaaactagcaagagac 48237516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 4494010 - 4494059
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  4494010 aaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 4494059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9098952 - 9098903
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||| ||||||||| ||||||||| ||||||||  |||||||    
T  9098952 aaaatgtaatatttgattacaattgctcactgctaaaactaccaagagac 9098903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 9099758 - 9099709
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||| ||||||||| ||||||||| ||||||||  |||||||    
T  9099758 aaaatgtaatatttgattacaattgctcactgctaaaactaccaagagac 9099709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13302293 - 13302342
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagag 50  Q
    |||||||||||||||| ||||||| |||| |||| ||||||||| |||||    
T  13302293 ctaaaatgtaatatcttattacaactgctgactgctaaaactagcaagag 13302342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 14187124 - 14187173
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  14187124 aaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 14187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 331090 - 331134
Alignment:
Q  8 gtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||| ||||||||| |||| |||| |||||||    
T  331090 gtaatatctgattacaaatgctcactgctaaacctagcaagagac 331134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16310632 - 16310600
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  16310632 ctaaaatgtaatatctgattacaactgctcact 16310600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2690 - 2639
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  2690 ctaaaatgtaatatctgattacaactgctcactgttaaaactagcaagagac 2639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 32459 - 32408
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  32459 ctaaaatgtaatatctgattacaactgctcactgctaaaactagaaagagac 32408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 18431606 - 18431555
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  18431606 ctaaaatgtaatatctgattacaactgctcactgttaaaactagcaagagac 18431555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 41122354 - 41122303
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  41122354 ctaaaatgtaatatctgattacaattgctcactgttaaaactagcaagagac 41122303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22455627 - 22455576
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  22455627 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 22455576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 24575467 - 24575518
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  24575467 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 24575518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24851331 - 24851280
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  24851331 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 24851280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25188831 - 25188882
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  25188831 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 25188882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 18702175 - 18702224
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  18702175 aaaatgtaatatctgattacaattgctcactgctaaaactagcaagagac 18702224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 17963935 - 17963884
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||| ||||||||| ||||||||| ||||||||| |||||||    
T  17963935 ctaaaatgtaatatttgattacaactgctcactgctaaaactagcaagagac 17963884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20569418 - 20569367
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| || |||||| ||||||||| |||||||    
T  20569418 ctaaaatgtaatatctgattacaactggtcactgctaaaactagcaagagac 20569367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22257633 - 22257684
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  22257633 ctaaaatgtaatatctaattacaactgctcactgctaaaactagcaagagac 22257684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23184970 - 23184919
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| | ||||||| |||||||    
T  23184970 ctaaaatgtaatatctgattacaactgctcactgctcaaactagcaagagac 23184919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 23596233 - 23596182
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| | ||||||| |||||||    
T  23596233 ctaaaatgtaatatctgattacaactgctcactgctcaaactagcaagagac 23596182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25037929 - 25037878
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| |||||| || |||||||    
T  25037929 ctaaaatgtaatatctgattacaactgctcactgctaaaacaagcaagagac 25037878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25828593 - 25828636
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  25828593 ctaaaatgtaatatctgattacaactgctcactgctaaaactag 25828636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40781908 - 40781959
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||  ||||||||| |||||||    
T  40781908 ctaaaatgtaatatctgattacaactgctcactcctaaaactagcaagagac 40781959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 6574759 - 6574716
Alignment:
Q  9 taatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||    
T  6574759 taatatctgattacaattgctcactgctaaaactagcaagagac 6574716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19539848 - 19539899
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  19539848 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 19539899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 22188768 - 22188725
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaaga 49  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  22188768 atgtaatatctgattacaattgctcactgctaaaactagcaaga 22188725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26367076 - 26367025
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||| || |||||| ||||||||| |||||||    
T  26367076 ctaaaatgtaatatcttattacaactgttcactgctaaaactagcaagagac 26367025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30557990 - 30557939
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||| ||||||||||||||||  ||||||||| ||||||||| |||||||    
T  30557990 ctaaaaagtaatatctgattacagttgctcactgctaaaactagcaagagac 30557939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 39038309 - 39038258
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| |||||| || | ||||||| |||||||    
T  39038309 ctaaaatgtaatatctgattacaactgctcattgcttaaactagcaagagac 39038258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 23234444 - 23234490
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  23234444 atgtaatatctaattacaattgctcactgctaaaactagcaagagac 23234490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 38780832 - 38780870
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  38780832 atgtaatatctgattacaattgctcactgctaaaactag 38780870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 10010417 - 10010368
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||| ||||||||| ||| ||||| ||||||||| |||||||    
T  10010417 aaaatgtaatatttgattacaactgcccactgctaaaactagcaagagac 10010368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 13964639 - 13964602
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaacta 43  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  13964639 atgtaatatctgattacaattgctcactgctaaaacta 13964602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 26623119 - 26623070
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||| ||||||||||||||| ||||||||  ||||||||| |||||||    
T  26623119 aaaatgcaatatctgattacaactgctcactactaaaactagcaagagac 26623070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 28141267 - 28141218
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||| |||| | ||||||| ||||||||| |||||||    
T  28141267 aaaatgtaatatctgatcacaactactcactgctaaaactagcaagagac 28141218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 14063709 - 14063660
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  14063709 aaaatgtaatatctgattacaactgctcactgctaaaactagaaagagac 14063660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29952159 - 29952108
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  29952159 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 29952108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 30001313 - 30001262
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  30001313 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 30001262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 26418396 - 26418347
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  26418396 aaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 26418347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13939332 - 13939383
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| |||||| || ||||||||| |||||||    
T  13939332 ctaaaatgtaatatctgattacaattgctcagtgctaaaactagcaagagac 13939383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19250074 - 19250023
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||| |||||||    
T  19250074 ctaaaatataatatctgattacaattgctcactgctaaaactagcaagagac 19250023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 49643484 - 49643433
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| || |||||| ||||||||| |||||||    
T  49643484 ctaaaatgtaatatctgattacaactggtcactgctaaaactagcaagagac 49643433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 14968803 - 14968849
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  14968803 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 14968849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 22128516 - 22128562
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||| |||||||||||| ||||||||||||||||||| |||||||    
T  22128516 atgtaacatctgattacaattgctcactgttaaaactagcaagagac 22128562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 38178362 - 38178316
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  38178362 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 38178316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 47207144 - 47207190
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  47207144 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 47207190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 47406142 - 47406096
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  47406142 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 47406096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 16032034 - 16032083
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  16032034 aaaatgtaatatctaattacaactgctcactgctaaaactagcaagagac 16032083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 16659312 - 16659263
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||||||  |||||||    
T  16659312 aaaatgtaatatctgattacaactgctcactgctaaaactaacaagagac 16659263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 20645592 - 20645641
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||| |||||||||||||||| ||||||||| ||||||||| |||||||    
T  20645592 aaaatttaatatctgattacaactgctcactgctaaaactagcaagagac 20645641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 20724527 - 20724576
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||| ||| |||||||    
T  20724527 aaaatgtaatatctgattacaactgctcactgctaaaattagcaagagac 20724576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 11189454 - 11189498
Alignment:
Q  8 gtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||    
T  11189454 gtaatatctgattacaattgctcactgctaaaactagcaagagac 11189498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14393727 - 14393676
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  14393727 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 14393676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19889636 - 19889585
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||||| || |||| |||| ||||||||| |||||||    
T  19889636 ctaaaatgtaatatctgattaaaactgctaactgctaaaactagcaagagac 19889585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 28581545 - 28581588
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaaga 49  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||    
T  28581545 atgtaatatctgattacaattgctcactgctaaaactagcaaga 28581588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 53057445 - 53057402
Alignment:
Q  9 taatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||    
T  53057445 taatatctgattacaattgctcactgctaaaactagcaagagac 53057402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 1728735 - 1728689
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| || |||||| ||||||||| |||||||    
T  1728735 atgtaatatctgattacaattgttcactgctaaaactagcaagagac 1728689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 11222256 - 11222302
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||| | ||||||||| |||||||    
T  11222256 atgtaatatctgattacaattgctcaccgctaaaactagcaagagac 11222302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 11223004 - 11223050
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||| | ||||||||| |||||||    
T  11223004 atgtaatatctgattacaattgctcaccgctaaaactagcaagagac 11223050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 25398974 - 25398928
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||| ||| ||||||||| |||||||    
T  25398974 atgtaatatctgattacaattgctcgctgctaaaactagcaagagac 25398928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 40799337 - 40799383
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||  ||||||||| |||||||    
T  40799337 atgtaatatctgattacaattgctcacttctaaaactagcaagagac 40799383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 12967747 - 12967796
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| |  |||||| ||||||||| |||||||    
T  12967747 aaaatgtaatatctgattacaactagtcactgctaaaactagcaagagac 12967796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 20628151 - 20628106
Alignment:
Q  7 tgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||| |||||| || ||||||||| |||||||    
T  20628151 tgtaatatctgattacaattgctcattgctaaaactagcaagagac 20628106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 22804745 - 22804708
Alignment:
Q  2 taaaatgtaatatctgattacaagtgctcactgttaaa 39  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  22804745 taaaatgtaatatctgattacaactgctcactgctaaa 22804708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3238128 - 3238160
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  3238128 ctaaaatgtaatatctgattacaattgctcact 3238160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12726957 - 12726925
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  12726957 ctaaaatgtaatatctgattacaactgctcact 12726925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 52919904 - 52919940
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaa 39  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  52919904 aaaatgtaatatctgattacaactgctcactgctaaa 52919940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9395 - 9446
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  9395 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 9446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7362 - 7413
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  7362 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 7413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 158548 - 158599
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  158548 ctaaaatgtaatatctgattacaattgctcactgctaaaactagcaagagac 158599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 36867 - 36918
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| || |||||| |||||||    
T  36867 ctaaaatgtaatatctgattacaattgctcactgctagaactagcaagagac 36918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 134927 - 134978
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| || |||||| |||||||    
T  134927 ctaaaatgtaatatctgattacaattgctcactgctagaactagcaagagac 134978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 378220 - 378169
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  378220 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 378169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 244951 - 244902
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  244951 aaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 244902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 219677 - 219728
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||||||||  |||||||| ||||||||| |||||||    
T  219677 ctaaaatgtaatatctgattacaaaagctcactgataaaactagcaagagac 219728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19153462 - 19153513
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  19153462 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 19153513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19957059 - 19957008
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  19957059 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 19957008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20256234 - 20256183
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  20256234 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 20256183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 15934380 - 15934331
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  15934380 aaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 15934331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19942665 - 19942716
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  |||||||||||    
T  19942665 ctaaaatgtaatatctgattacaactgctcactgctaaacttagaaagagac 19942716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 23264342 - 23264296
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  23264342 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 23264296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 33560933 - 33560887
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  33560933 atgtaatatctgattacaaatgctcactgctaaaactagcaagagac 33560887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 18679246 - 18679295
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| |||||| || ||||||||| |||||||    
T  18679246 aaaatgtaatatctgattacaaatgctcattgctaaaactagcaagagac 18679295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 18718435 - 18718484
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| |||||| || ||||||||| |||||||    
T  18718435 aaaatgtaatatctgattacaaatgctcattgctaaaactagcaagagac 18718484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12758458 - 12758407
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  12758458 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 12758407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16681974 - 16681923
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  16681974 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 16681923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 17442536 - 17442490
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||  ||||| |||||||||||    
T  17442536 atgtaatatctgattacaattgctcactactaaaaatagaaagagac 17442490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17526457 - 17526419
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaa 39  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  17526457 ctaaaatgtaatatctgattacaactgctcactgctaaa 17526419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 21932315 - 21932353
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  21932315 atgtaatatctgattacaattgctcactgctaaaactag 21932353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 26832514 - 26832556
Alignment:
Q  10 aatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||    
T  26832514 aatatctgattacaactgctcactgctaaaactagcaagagac 26832556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 39692968 - 39693014
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||  ||||||||| |||||||    
T  39692968 atgtaatatctgattacaactgctcactcctaaaactagcaagagac 39693014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 18772124 - 18772173
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||| ||||||||||||||||| ||||||||| ||| ||||| |||||||    
T  18772124 aaaaagtaatatctgattacaactgctcactgctaacactagcaagagac 18772173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 43773552 - 43773597
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagaga 51  Q
    ||||||||||||||||||| ||||| ||| ||||||||| ||||||    
T  43773552 atgtaatatctgattacaaatgctctctgctaaaactagcaagaga 43773597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25163500 - 25163532
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  25163500 ctaaaatgtaatatctgattacaactgctcact 25163532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43644326 - 43644366
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaac 41  Q
    ||||||| |||||||||||||||| ||||||||| ||||||    
T  43644326 ctaaaatataatatctgattacaactgctcactgctaaaac 43644366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12353498 - 12353447
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  12353498 ctaaaatgtaatatctgattacaaatgctcactgctaaaactagcaagagac 12353447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 19537001 - 19536950
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  19537001 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 19536950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25097530 - 25097479
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  25097530 ctaaaatgtaatatctgattacaattgctcactgctaaaactagcaagagac 25097479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 25155500 - 25155449
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  25155500 ctaaaatgtaatatctgattacaattgctcactgctaaaactagcaagagac 25155449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21100406 - 21100355
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||||||||  |||||||| ||||||||| |||||||    
T  21100406 ctaaaatgtaatatctgattacaacggctcactgctaaaactagcaagagac 21100355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 26783787 - 26783838
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||| ||||| |||||| ||||||||| |||||||||||||||||    
T  26783787 ctaaaatgtaacatctgtttacaactgctcactgctaaaactagaaagagac 26783838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 31487674 - 31487720
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  31487674 atgtaatatctgattacaattgctcactgctaaaactacaaagagac 31487720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 643404 - 643355
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagag 50  Q
    |||||||||||||||||||||||| ||||||||  ||||||||| |||||    
T  643404 ctaaaatgtaatatctgattacaactgctcactactaaaactagcaagag 643355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21072940 - 21072889
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  21072940 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 21072889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22000731 - 22000680
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  22000731 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 22000680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23880499 - 23880550
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| | ||||||| || |||||| |||||||    
T  23880499 ctaaaatgtaatatctgattacaactactcactgctacaactagcaagagac 23880550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 23413677 - 23413640
Alignment:
Q  2 taaaatgtaatatctgattacaagtgctcactgttaaa 39  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  23413677 taaaatgtaatatctgattacaactgctcactgctaaa 23413640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 6641115 - 6641166
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  6641115 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 6641166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 23749955 - 23750006
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  23749955 ctaaaatgtaatatctgattacaactgttcactgttaaaactagcaagagac 23750006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 8686119 - 8686070
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  8686119 aaaatgtaatatctgattacaattgctcactgctaaaactagcaagagac 8686070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 19912558 - 19912508
Alignment:
Q  2 taaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  19912558 taaaatgtaatatctaattacaactgctcactgctaaaactagcaagagac 19912508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 20976892 - 20976938
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  20976892 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 20976938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 39420381 - 39420335
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  39420381 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 39420335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 15015063 - 15015014
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  15015063 aaaatgtaatatctaattacaactgctcactgctaaaactagcaagagac 15015014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 17788717 - 17788668
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||| ||||||||| ||||||||| ||||||||| |||||||    
T  17788717 aaaatgtaatatttgattacaactgctcactgctaaaactagcaagagac 17788668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 41115434 - 41115385
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||| ||||||||| ||||||||| ||||||||| |||||||    
T  41115434 aaaatgtaatatttgattacaactgctcactgctaaaactagcaagagac 41115385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3395081 - 3395132
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  3395081 ctaaaatgtaatatctgattacaattgctcactgctaaacttagcaagagac 3395132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 11900622 - 11900673
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||| | ||||||| ||||||||| |||||||    
T  11900622 ctaaaatgtaatatctaattacaattactcactgctaaaactagcaagagac 11900673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14605584 - 14605533
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  14605584 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 14605533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 37986291 - 37986240
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||| |||||||| || |||||| ||||||||| |||||||    
T  37986291 ctaaaatgtaatatccgattacaattgatcactgctaaaactagcaagagac 37986240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 17539840 - 17539882
Alignment:
Q  10 aatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||    
T  17539840 aatatctgattacaactgctcactgctaaaactagcaagagac 17539882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 22676199 - 22676153
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| || |||||| ||||||||| |||||||    
T  22676199 atgtaatatctgattacaattgttcactgctaaaactagcaagagac 22676153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 38513342 - 38513388
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  38513342 atgtaatatctgattacaattactcactgctaaaactagcaagagac 38513388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 45832821 - 45832867
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| |||| |||| |||||||    
T  45832821 atgtaatatctgattacaattgctcactgctaaacctagcaagagac 45832867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 56034007 - 56034053
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| || ||||||||| ||||||||| |||||||    
T  56034007 atgtaatatctgattaaaattgctcactgctaaaactagcaagagac 56034053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 11915135 - 11915184
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||| ||||||| |||||| || ||||||||| |||||||    
T  11915135 aaaatgtaatatcttattacaattgctcattgctaaaactagcaagagac 11915184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12600191 - 12600224
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactg 34  Q
    |||||||||||||||||||||||| |||||||||    
T  12600191 ctaaaatgtaatatctgattacaactgctcactg 12600224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 55379744 - 55379793
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  55379744 aaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 55379793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 19665801 - 19665837
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaact 42  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  19665801 atgtaatatctgattacaactgctcactgctaaaact 19665837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 29120802 - 29120838
Alignment:
Q  8 gtaatatctgattacaagtgctcactgttaaaactag 44  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  29120802 gtaatatctgattacaattgctcactgctaaaactag 29120838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 12625197 - 12625146
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  12625197 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 12625146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 22202378 - 22202327
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  22202378 ctaaaatgtaatatctgattacaattgctcactgctaaaactagcaagagac 22202327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33256994 - 33256943
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  33256994 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 33256943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33277166 - 33277115
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  33277166 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 33277115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 48703699 - 48703750
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  48703699 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 48703750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21192508 - 21192456
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagaca 53  Q
    |||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||    
T  21192508 ctaaaatgtaatatctgattgcaactgctcactgctaaaactagcaagagaca 21192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26702773 - 26702722
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||| |||||||    
T  26702773 ctaaaatgtaatatctgatcacaactgctcactgctaaaactagcaagagac 26702722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28492926 - 28492883
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  28492926 ctaaaatgtaatatctgattacaactgctcactgctaaaactag 28492883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 30892529 - 30892580
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  30892529 ctaaaatgtaatatctaattacaactgctcactgctaaaactagcaagagac 30892580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 1577306 - 1577352
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  1577306 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 1577352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 2266538 - 2266584
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  2266538 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 2266584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 16235947 - 16235901
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  16235947 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 16235901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 35039606 - 35039652
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  35039606 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 35039652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 36133643 - 36133689
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  36133643 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 36133689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 38281824 - 38281870
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  38281824 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 38281870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 38282005 - 38282051
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  38282005 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 38282051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7309254 - 7309305
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  7309254 ctaaaatgtaatatctgattacaaatgctcactgctaaacttagcaagagac 7309305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14293267 - 14293216
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||| | |||||| ||||||||| ||||||||| |||||||    
T  14293267 ctaaaatgtaatatccggttacaactgctcactgctaaaactagcaagagac 14293216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 1899786 - 1899832
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| || ||||||||| ||||||||| |||||||    
T  1899786 atgtaatatctgattaaaattgctcactgctaaaactagcaagagac 1899832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 22600827 - 22600781
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  22600827 atgtaatatcttattacaattgctcactgctaaaactagcaagagac 22600781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 23037146 - 23037100
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||| | ||||||||| |||||||    
T  23037146 atgtaatatctgattacaattgctcacagctaaaactagcaagagac 23037100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 32786579 - 32786533
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||  |||||||    
T  32786579 atgtaatatctgattacaattgctcactgctaaaactatcaagagac 32786533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 10756863 - 10756912
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  10756863 aaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 10756912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 22427979 - 22427930
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  22427979 aaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 22427930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 22153296 - 22153344
Alignment:
Q  4 aaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  22153296 aaatgtaatatctgattacaattgctcactgctaaacttagcaagagac 22153344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 52
Target Start/End: Original strand, 8098 - 8148
Alignment:
Q  2 taaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  8098 taaaatgtaatatctgattacaactgctcactgctaaaactagcaagagac 8148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15301652 - 15301702
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagaga 51  Q
    |||||||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  15301652 ctaaaatgtaatatctgattacaactgctcactgctaaaactagcaagaga 15301702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 13601604 - 13601647
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  13601604 ctaaaatgtaatatctgattacaactgctcactgctaaaactag 13601647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 14101150 - 14101099
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||| |||||||    
T  14101150 ctaaaatgtaatatctgattacaactgctctctgctaaaactagcaagagac 14101099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14732828 - 14732785
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactag 44  Q
    |||||||||||||||||||||||| ||||||||| |||||||||    
T  14732828 ctaaaatgtaatatctgattacaactgctcactgctaaaactag 14732785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16528748 - 16528799
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||  ||||||||| |||||||    
T  16528748 ctaaaatgtaatatctgattacaactgctcactactaaaactagcaagagac 16528799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 20113349 - 20113298
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  20113349 ctaaaatgtaatatctaattacaactgctcactgctaaaactagcaagagac 20113298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 15532334 - 15532288
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  15532334 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 15532288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 21234599 - 21234644
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagaga 51  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  21234599 atgtaatatctgattacaattgctcactgctaaaactagcaagaga 21234644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 9717285 - 9717329
Alignment:
Q  8 gtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||||    
T  9717285 gtaatatctgattacaattgctcactgctaaaactagcaagagac 9717329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 15986791 - 15986842
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  15986791 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 15986842  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16914862 - 16914913
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| | | ||||||| ||||||||| |||||||    
T  16914862 ctaaaatgtaatatctgattacgactactcactgctaaaactagcaagagac 16914913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 19470108 - 19470155
Alignment:
Q  5 aatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||| |||||||||||||| ||||||||| ||||||||| |||||||    
T  19470108 aatgtgatatctgattacaattgctcactgctaaaactagcaagagac 19470155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19623416 - 19623467
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  19623416 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 19623467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 20731410 - 20731367
Alignment:
Q  9 taatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||    
T  20731410 taatatctgattacaattgctcactgctaaaactagcaagagac 20731367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 13435324 - 13435370
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| || |||||| ||||||||| |||||||    
T  13435324 atgtaatatctgattacaattgttcactgctaaaactagcaagagac 13435370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 17317203 - 17317157
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| | ||||||| ||||||||| |||||||    
T  17317203 atgtaatatctgattacaattactcactgctaaaactagcaagagac 17317157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 17381017 - 17381063
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  17381017 atgtaatatctaattacaattgctcactgctaaaactagcaagagac 17381063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 18377882 - 18377928
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  18377882 atgtaatatctaattacaaatgctcactgctaaaactagcaagagac 18377928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29538049 - 29538083
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgt 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  29538049 ctaaaatgtaatatctgattacaactgctcactgt 29538083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 19085597 - 19085646
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  19085597 aaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 19085646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 24116264 - 24116296
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  24116264 ctaaaatgtaatatctgattacaactgctcact 24116296  T

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Target: scaffold1281 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1281
Description:

Target: scaffold1281; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 2058 - 2007
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||| |||||||    
T  2058 ctaaaatgtaatatctgattacaactgcgcactgctaaaactagcaagagac 2007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 6360 - 6314
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  6360 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 6314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 18472 - 18518
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||    
T  18472 atgtaatatctgattacaattgctcactgctaaaactagcaagagac 18518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 5660 - 5705
Alignment:
Q  7 tgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||    
T  5660 tgtaatatctgattacaactgctcactgctaaaactagcaagagac 5705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 609 - 564
Alignment:
Q  7 tgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||| ||||||||| ||||||||| |||||||    
T  609 tgtaatatctgattacaattgctcactgctaaaactagcaagagac 564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 8074 - 8123
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| |||||| || ||||||||| |||||||    
T  8074 aaaatgtaatatctgattacaattgctcattgctaaaactagcaagagac 8123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 2730 - 2681
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||| ||||||| ||||||||| ||||||||| |||||||    
T  2730 aaaatgtaatatcttattacaactgctcactgctaaaactagcaagagac 2681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1657 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1657
Description:

Target: scaffold1657; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1279 - 1330
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||| ||||||||||||||||| ||||||||  ||||||||| |||||||    
T  1279 ctaaaaagtaatatctgattacaattgctcactactaaaactagcaagagac 1330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 13855 - 13808
Alignment:
Q  5 aatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||| ||| ||||| ||||||||| |||||||    
T  13855 aatgtaatatctgattacaactgcccactgctaaaactagcaagagac 13808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 1097 - 1148
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  1097 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 1148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16802 - 16751
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||||| || ||||||||  ||||||||| |||||||    
T  16802 ctaaaatgtaatatctgattataactgctcacttctaaaactagcaagagac 16751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2669 - 2720
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||  ||||||| | |||||||    
T  2669 ctaaaatgtaatatctgattacaactgctcactactaaaactggcaagagac 2720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13481 - 13532
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||| | | ||||||||| ||||||||| |||||||    
T  13481 ctaaaatgtaatatctgattgcgactgctcactgctaaaactagcaagagac 13532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 83833 - 83880
Alignment:
Q  6 atgtaatatctgattacaagtgctcactg-ttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||||||    
T  83833 atgtaatatctgattacaattgctcactgcttaaaactagcaagagac 83880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 211794 - 211845
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  211794 ctaaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 211845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 2422 - 2468
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| ||||||||  ||||| |||||||||||    
T  2422 atgtaatatctgattacaaatgctcactactaaaaatagaaagagac 2468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 76691 - 76733
Alignment:
Q  10 aatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||| ||||||||| ||||||||| |||||||    
T  76691 aatatctgattacaactgctcactgctaaaactagcaagagac 76733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 90726 - 90680
Alignment:
Q  6 atgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    ||||||||||||||||||| |||| |||| ||||||||| |||||||    
T  90726 atgtaatatctgattacaattgctaactgctaaaactagcaagagac 90680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0426 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0426
Description:

Target: scaffold0426; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 13083 - 13120
Alignment:
Q  15 ctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  13083 ctgattacaactgctcactgctaaaactagaaagagac 13120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 5130 - 5179
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| |||| ||||  |||||||| |||||||    
T  5130 aaaatgtaatatctgattacaactgcttactgcgaaaactagcaagagac 5179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 21677 - 21628
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||||||||||||| ||||||||| ||||  ||| |||||||    
T  21677 aaaatgtaatatctgattacaactgctcactgctaaacttagcaagagac 21628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 44532 - 44483
Alignment:
Q  3 aaaatgtaatatctgattacaagtgctcactgttaaaactagaaagagac 52  Q
    |||||||||||| ||||||||| || |||||| ||||||||| |||||||    
T  44532 aaaatgtaatatttgattacaattggtcactgctaaaactaggaagagac 44483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9402 - 9434
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  9402 ctaaaatgtaatatctgattacaactgctcact 9434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 48770 - 48802
Alignment:
Q  1 ctaaaatgtaatatctgattacaagtgctcact 33  Q
    |||||||||||||||||||||||| ||||||||    
T  48770 ctaaaatgtaatatctgattacaactgctcact 48802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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