View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_high_31 (Length: 271)
Name: NF16840_high_31
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 51998544 - 51998784
Alignment:
| Q |
13 |
gtagcataggtcacttgagaaggtttgtttgtgtgaattgagtagagaaatcgatactttgatttgctcgtgatcgaaagcgtttcaacaaacaaagtgt |
112 |
Q |
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| T |
51998544 |
gtagcacaggtcacttgagaaggtttgttcgtgtggattgagtaaagaaatcgatactttgctttgctcgtgatcgaaaacgtttcaacaaacaaagtgt |
51998643 |
T |
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| Q |
113 |
ttcatcaacacaatttctacacttcaaaaggtaacattcatatcactgaatttgtattgatcccggg-aaataaattttaattattcgcttcagtggtat |
211 |
Q |
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| T |
51998644 |
ttcatcaacactatttctacacttcaaaaggtaacattcatatcgctgaatttgtattgatcccgggaaaataaattttaattattcgcttcagtggtat |
51998743 |
T |
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| Q |
212 |
aaaagccaattatcaaaccatgaatcagtcccttcaatggt |
252 |
Q |
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| T |
51998744 |
aaaagccaattatcaaaccatgaatcagccccttcaatggt |
51998784 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 54333258 - 54333184
Alignment:
| Q |
29 |
gagaaggtttgtttgtgtgaattgagtagagaaatcgatactttgatttgctcgtgatcgaaagcgtttcaacaa |
103 |
Q |
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| T |
54333258 |
gagaaggtctgttcgtgtagactgagtagagacatcgttactttgttttgctcgtgatcgaaaacttttcaacaa |
54333184 |
T |
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