View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16840_high_35 (Length: 258)
Name: NF16840_high_35
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_35 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr7 (6 HSPs) |
| |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 258
Target Start/End: Complemental strand, 1499763 - 1499514
Alignment:
| Q |
9 |
catccttatgaatattatatgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactc |
108 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1499763 |
catccttacgaatattatatgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgcagtccaaactaactc |
1499664 |
T |
|
| Q |
109 |
aaataaaggtttctcaatttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1499663 |
aaataaaggtttctcaatttcaggtactaggtcagagccaacaatgactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtaggtga |
1499564 |
T |
|
| Q |
209 |
gtatcactaggtccacaaaatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1499563 |
gtattactaggtccacaaaatgagattgcagtgatttcagaacaaacaac |
1499514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 1478504 - 1478273
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| ||||| ||||| || | |||||||||||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
1478504 |
atgttagaccagcttcacgaaggtgaccatcaatggctccctcactgtctggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaat |
1478405 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||| | ||||||| |||||||| | ||| ||||| ||||||||||||| ||||||||||||||| ||| | |||||||||||||| |||| |
|
|
| T |
1478404 |
ttctggtattgggtcagaaccaacaatgagtgcagcagcaccatctccaaatagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacgg |
1478305 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| | |||||| ||||||||||||||||| |
|
|
| T |
1478304 |
aatgtcactgcagtaacttcagaacaaacaac |
1478273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 1492673 - 1492442
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
|||||| |||| |||||||||| |||||| ||| || ||||||||||||| |||||||||||||| ||||||| | |||||||| |||||| ||||| |
|
|
| T |
1492673 |
atgttaacccagcttcacgaagatgaccatcaatggcaccttcactatcaggagcaattgtttgtgctgtccaaatcatctcaaatataggtttttcaat |
1492574 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| ||||| | ||||| |||||||||| ||| || |||||||||||||||| ||||||||||||||| ||| | || |||||||| || |||| | |
|
|
| T |
1492573 |
ttctggtaccggatcagacccaacaataagtgcagctgctccatctccaaatagtgcttgtccaacaagactgtccaagtgtgtatcactgggaccacga |
1492474 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || |||||||||||||||||||||||| |
|
|
| T |
1492473 |
aatgtgactgcagtgacttcagaacaaacaac |
1492442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 1509629 - 1509398
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||| || |||||||||| | |||||||||||||| ||||||||| | |||||||| || ||||||||| |
|
|
| T |
1509629 |
atgttagtccaacttcacgaaggtgaccgtcaatggcaccttcactatttggagcaattgtttgtgcagtccaaaccatctcaaatatagatttctcaat |
1509530 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| ||||| |||||| |||||||| | ||| ||||||||||||||||||| ||||||||||||||| ||| | |||||||||| ||| |||||| |
|
|
| T |
1509529 |
ttctggtacagggtcagtaccaacaatgagtgcagcagctccatctccaaataatgcttgtccaacaagactgtccaaatgagtatcaccagggccacaa |
1509430 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || |||| |||||| |||||||||||| |
|
|
| T |
1509429 |
aatgtgactgcaatgactttagaacaaacaac |
1509398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 1482698 - 1482467
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| ||||| ||| || || ||||| || | |||||||||||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
1482698 |
atgttagaccagcttcacgaagatgaccgtcaatggccccctcactgtctggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaat |
1482599 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||| | ||||||| |||||||| | ||| ||||||||||||||||| | ||||||||||||||| ||| | |||||||||||||| |||| |
|
|
| T |
1482598 |
ttctggtattgggtcagaaccaacaatgagtgcagcagctccatctccaaagagtgcttgtccaacaagactgtccaaatgagtatcactaggaccacgg |
1482499 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| | |||||| ||||||||||||||||| |
|
|
| T |
1482498 |
aatgtcactgcagtaacttcagaacaaacaac |
1482467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 1505482 - 1505251
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| ||||| ||| |||||||| ||||||| || |||||||||| ||||||||| | ||||||| |||||||||||| |
|
|
| T |
1505482 |
atgttagtccagcttcacgaaggtgaccgtcaatggctccttcgctatcaggcgcgattgtttgtgcagtccaaaccatttcaaatataggtttctcaat |
1505383 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||| | | || || |||||||| | ||| ||||||||||||||||||| |||||||||||||| ||| | |||||||||||||| || | | |
|
|
| T |
1505382 |
ttctggtattggatctgaaccaacaattagtgcagcagctccatctccaaatagagcttgtccaacaaggctgtccaagtgagtatcactagggccgcga |
1505283 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || |||||||||||| ||||| ||||| |
|
|
| T |
1505282 |
aatgtgactgcagtgacttcggaacagacaac |
1505251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 1487193 - 1487007
Alignment:
| Q |
9 |
catccttatgaatattatatgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactc |
108 |
Q |
| |
|
|||| ||| ||| |||| ||||||| ||||||||||||||||| || | ||| ||| |||||||||| ||| |||||||||| ||||||||| | ||| |
|
|
| T |
1487193 |
catctttacgaagattaaatgttagtccaacttcacgaagttggccgctaattgcttcttcactatctagagctattgtttgtgcagtccaaacaagctc |
1487094 |
T |
|
| Q |
109 |
aaataaaggtttctcaatttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaag |
195 |
Q |
| |
|
||| | |||||||||||||| | || | || ||||||||||| ||| | |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1487093 |
aaagagaggtttctcaatttttgatatcggatcggagccaacaatgactacaacagctccatcaccaaataatgcttgtccaacaag |
1487007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 31 - 258
Target Start/End: Original strand, 24163411 - 24163638
Alignment:
| Q |
31 |
tagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaatttca |
130 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||| | ||| |||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24163411 |
tagcccaaattcacgaagttggccacaaatagctccttcactatttggagcgattgtttgtgctgtccaaactaactcaaatagaggtttctcaatttcc |
24163510 |
T |
|
| Q |
131 |
ggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaaaatg |
230 |
Q |
| |
|
||| | |||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| |||| || |||||||| || ||||||||||||| |
|
|
| T |
24163511 |
tgtattgggtcagagccaacaatgactgcagcagctccatctccaaatagagcttgtccaacaaggttgtctaagtgagtatcgcttggtccacaaaatg |
24163610 |
T |
|
| Q |
231 |
agattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||||| || ||||||||||||||||| |
|
|
| T |
24163611 |
tgattgcggtaacttcagaacaaacaac |
24163638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 5315616 - 5315385
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||||| || |
|
|
| T |
5315616 |
atgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctctat |
5315517 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||||| |||||||||||||||||| || || |||||||||||||||| ||||||||||||||| ||| || |||||||||||||| |||| | |
|
|
| T |
5315516 |
ttctggtactgggtcagagccaacaataagagcagccgctccatctccaaatagtgcttgtccaacaaggctgtctaagtgagtatcactaggaccacga |
5315417 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || || |||||||||||||||||||| |
|
|
| T |
5315416 |
aatgtgacagcggtgacttcagaacaaacaac |
5315385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 5284813 - 5284582
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| |||| ||||||| |
|
|
| T |
5284813 |
atgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtctctcaat |
5284714 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||| | |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||| || |||||||| ||||| |||| | |
|
|
| T |
5284713 |
ttctggtattgggtcagagccaacaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtctaagtgagtatcgctagggccacga |
5284614 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || || |||||||||||||||||||| |
|
|
| T |
5284613 |
aatgtgacagcggtgacttcagaacaaacaac |
5284582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 230
Target Start/End: Complemental strand, 5303001 - 5302798
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
5303001 |
atgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaat |
5302902 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| ||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| |||| | |
|
|
| T |
5302901 |
ttctggtacggggtcagagccaacaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtccaagtgagtatcactagggccacga |
5302802 |
T |
|
| Q |
227 |
aatg |
230 |
Q |
| |
|
|||| |
|
|
| T |
5302801 |
aatg |
5302798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 5310902 - 5310671
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| |||||||||||||||| |||||||||||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
5310902 |
atgttagtccagcttcacgaaggtgaccatcaatggctccttcactatcaggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaat |
5310803 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||||| ||||||| |||||||||| || ||||||||||||||||| | |||||| |||||||| ||| | ||||||||||| || |||| | |
|
|
| T |
5310802 |
ttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacaatgcttgcccaacaaggctgtccaagtgagtatcactggggccacga |
5310703 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || || |||||||||||||||||||| |
|
|
| T |
5310702 |
aatgtgacagcggtgacttcagaacaaacaac |
5310671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 5289314 - 5289545
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| || ||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
5289314 |
atgttagtccagcttcacgaaggtggccatcaatggctccttcactatccggagcaattgtttgtgcagtccaaaccatctcaaatataggtttctcaat |
5289413 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||||| ||||||| |||||||||| || ||||||||||||||||| | |||||| |||||||| ||| | ||||||||||| || |||| |
|
|
| T |
5289414 |
ttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacgg |
5289513 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || || |||||||||||||||||||| |
|
|
| T |
5289514 |
aatgtgacagcggtgacttcagaacaaacaac |
5289545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Original strand, 46706605 - 46706836
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| |||||||||||| |
|
|
| T |
46706605 |
atgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtgaagtccaaaccatctcaaatataggtttctcaat |
46706704 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||||| | ||||| |||||||||| ||| ||||||| ||||||| | |||||| |||||||| ||| | |||||||||||||| || | |
|
|
| T |
46706705 |
ttctggtactggatcagaaccaacaataagtgcagcagctctgactccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactagggccgcgg |
46706804 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || |||||||||||||||||||||||| |
|
|
| T |
46706805 |
aatgtgactgcagtgacttcagaacaaacaac |
46706836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 44129079 - 44128848
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| ||||||||||| |
|
|
| T |
44129079 |
atgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaat |
44128980 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||||| | || || |||||||| | ||| ||||||||||||||||||| || ||||||||||| ||| | |||||||||||||| || | | |
|
|
| T |
44128979 |
ttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcga |
44128880 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| |
|
|
| T |
44128879 |
aatgtgactgcagtgacttcagaacagacaac |
44128848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 44133284 - 44133053
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| |||||| ||| |||||||||||||| | |||||||||||||| ||||||||| | |||||||| ||||||||||| |
|
|
| T |
44133284 |
atgttagtccagcttcacgaaggtgaccatcaatggctccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaat |
44133185 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||||| | || || |||||||| | ||| ||||||||||||||||||| || ||||||||||| ||| | |||||||||||||| || | | |
|
|
| T |
44133184 |
ttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactagggccgcga |
44133085 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| |
|
|
| T |
44133084 |
aatgtgactgcagtgacttcagaacagacaac |
44133053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 258
Target Start/End: Complemental strand, 44141706 - 44141475
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||| |||||||||| ||||| ||| || ||||||||||| | |||||||||||||| ||||||||| | |||||||| ||||||||||| |
|
|
| T |
44141706 |
atgttagtccagcttcacgaaggtgaccgtcaatggccccttcactatctggagcaattgtttgtgcagtccaaaccatctcaaatattggtttctcaat |
44141607 |
T |
|
| Q |
127 |
ttcaggtactaggtcagagccaacaataactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtagttgagtatcactaggtccacaa |
226 |
Q |
| |
|
||| |||||| | || || |||||||| | ||| ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||| || | | |
|
|
| T |
44141606 |
ttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagtgcttgtccaacaaggctgtccaagtgagtatcactagggccgcga |
44141507 |
T |
|
| Q |
227 |
aatgagattgcagtgacttcagaacaaacaac |
258 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| |
|
|
| T |
44141506 |
aatgtgactgcagtgacttcagaacagacaac |
44141475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 134
Target Start/End: Complemental strand, 35251323 - 35251216
Alignment:
| Q |
27 |
atgttagcccaacttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaat |
126 |
Q |
| |
|
||||||| ||||| |||||||| |||||| ||||||||||| |||||||| | |||||||||| |||||| ||| |||||| |||||| |||||| |
|
|
| T |
35251323 |
atgttagtccaacctcacgaaggtgaccatcaatagctccttgactatcaggaaggattgtttgtgcagtccactctagctcaaacaaaggtctctcaac |
35251224 |
T |
|
| Q |
127 |
ttcaggta |
134 |
Q |
| |
|
||||||| |
|
|
| T |
35251223 |
ctcaggta |
35251216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 37863019 - 37863105
Alignment:
| Q |
39 |
cttcacgaagttgaccacaaatagctccttcactatcagaagcaattgtttgtgtagtccaaactaactcaaataaaggtttctcaa |
125 |
Q |
| |
|
|||| ||||| |||||| |||||||||||||||||| | | | |||||||||| ||||||||| || ||||| ||||| ||||||| |
|
|
| T |
37863019 |
cttctcgaaggtgaccatcaatagctccttcactatctggaacgattgtttgtgcagtccaaaccaattcaaacaaaggcttctcaa |
37863105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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