View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16840_high_4 (Length: 637)
Name: NF16840_high_4
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_4 |
 | |
|
| [»] scaffold0037 (7 HSPs) |
| | |
|
Alignment Details
Target: scaffold0037 (Bit Score: 88; Significance: 6e-42; HSPs: 7)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 101 - 212
Target Start/End: Complemental strand, 104787 - 104676
Alignment:
| Q |
101 |
tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttacca |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
104787 |
tacaaaagcagcaaagcaacacaaagacaagatgttttaacaaaagcaaaaatgcaacagttgtcaatgacacgcaagatgttgggacataaatttacca |
104688 |
T |
|
| Q |
201 |
gtttcttaattt |
212 |
Q |
| |
|
||||| |||||| |
|
|
| T |
104687 |
gtttcctaattt |
104676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 104220 - 104162
Alignment:
| Q |
360 |
tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
104220 |
tcaagagtctgctaaaatcctaacatatttactgctaaaatccttatacattatccctt |
104162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Original strand, 30236 - 30323
Alignment:
| Q |
125 |
agaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttaccagtttcttaattt |
212 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||||| || |||||| ||||||| ||||| | |||||||||| | ||||||||||||| |
|
|
| T |
30236 |
agaaaagatgttttaaccaaagcaaaaatgcaacacttatcaatgacacgcaatatgttcggacataaatttgcaagtttcttaattt |
30323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 30964 - 31007
Alignment:
| Q |
208 |
aatttctatgatatactcctgtatgattgttgtaataaaagtga |
251 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
30964 |
aatttctatgatatactcgtgtatgattcttgtaataaaagtga |
31007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 31254 - 31291
Alignment:
| Q |
355 |
acaattcaagagtctgctaaaatcctaacatattcact |
392 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31254 |
acaaatcaagagtctgctaaaatcctaacatattcact |
31291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 105004 - 104939
Alignment:
| Q |
12 |
agtagcataggtccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt |
77 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||||| | |||||||||||| |||||||| |
|
|
| T |
105004 |
agtaacataggtccaagtctcagttaagtattcacgagaaaagcgttgcaaacttcttgacctttt |
104939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 284 - 349
Target Start/End: Original strand, 31029 - 31098
Alignment:
| Q |
284 |
ttgtctgcattacattatatgcagcagacactaatattgttagatattgac----agagtttctaaatta |
349 |
Q |
| |
|
|||| ||||||||| ||| | |||||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
31029 |
ttgtttgcattacactatgttcagcagacaccaataatgttagatattgacaccgagagtttctaaatta |
31098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 14200455 - 14200380
Alignment:
| Q |
12 |
agtagcataggtccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt-acttgaaga |
86 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14200455 |
agtaacataggtccaagtctcagttaagtattcacgagaaaggtgttgcaaacttcccgaccttttcacttgaaga |
14200380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 14199895 - 14199837
Alignment:
| Q |
360 |
tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt |
418 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
14199895 |
tcaagagtctactaaaattctaacatattcacggctaaaatcctaatacattatccctt |
14199837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 14200238 - 14200172
Alignment:
| Q |
101 |
tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaa |
167 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
14200238 |
tacaaaagcagcaaagccacacaaagaaaatatgttttaacaaaagcaaaaatgaaaccgttgtcaa |
14200172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 353
Target Start/End: Complemental strand, 14200170 - 14200127
Alignment:
| Q |
310 |
gacactaatattgttagatattgacagagtttctaaattaatct |
353 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14200170 |
gacactcatattgttagatatttacagagtttctaaattaatct |
14200127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University