View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_high_49 (Length: 217)
Name: NF16840_high_49
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 9679473 - 9679622
Alignment:
| Q |
51 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatct |
150 |
Q |
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| T |
9679473 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatct |
9679572 |
T |
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| Q |
151 |
tttcttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
200 |
Q |
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| T |
9679573 |
tttcttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
9679622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 17312637 - 17312786
Alignment:
| Q |
51 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatct |
150 |
Q |
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| T |
17312637 |
ctaagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggaatggataattgcataacagttggtatct |
17312736 |
T |
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| Q |
151 |
tttcttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
200 |
Q |
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| T |
17312737 |
tttcttggctacggtttcaaattctaccaccgtgtcttaaagcaattctt |
17312786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 5187313 - 5187385
Alignment:
| Q |
98 |
tgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatcttttcttggctacggttccaaa |
171 |
Q |
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| T |
5187313 |
tgtggctactagtgtcaggaa-ggcagggataattgcataatagttggtgtcttttcttgcctactattccaaa |
5187385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 52 - 200
Target Start/End: Complemental strand, 9268633 - 9268485
Alignment:
| Q |
52 |
taagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctt |
151 |
Q |
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| T |
9268633 |
taagagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctt |
9268534 |
T |
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| Q |
152 |
ttcttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
200 |
Q |
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| T |
9268533 |
ttcttggctacggttccaaattctaccattgtgtcttaaagcaattctt |
9268485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 2680895 - 2681041
Alignment:
| Q |
54 |
agagcacaaatatcggcagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctttt |
153 |
Q |
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| T |
2680895 |
agagcacaaatatcgacagtgtcttttggcacataaggtccacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatctttt |
2680994 |
T |
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| Q |
154 |
cttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
200 |
Q |
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| T |
2680995 |
cttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
2681041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 46822091 - 46822151
Alignment:
| Q |
140 |
agttggtatcttttcttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
200 |
Q |
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| T |
46822091 |
agttggtatcttttcttggctacggttccaaattctaccactgtgtcttaaagcaattctt |
46822151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 200
Target Start/End: Original strand, 1885022 - 1885127
Alignment:
| Q |
94 |
cacgtgtggctactagtgtcaggaaaggcatggataattgcataacagttggtatcttttcttggctacggttccaaattctaccactgtgtcttaaagc |
193 |
Q |
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| T |
1885022 |
cacgtgtagctacttgtgtcag-aagtgcatggataattagataatagttggtgtcttttctttgctacgtttccaaactctaccaccgtatcttagagc |
1885120 |
T |
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| Q |
194 |
aattctt |
200 |
Q |
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| T |
1885121 |
aattctt |
1885127 |
T |
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