View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_high_5 (Length: 632)
Name: NF16840_high_5
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 17 - 615
Target Start/End: Complemental strand, 50408715 - 50408090
Alignment:
| Q |
17 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408715 |
attgtgattttttattctttttacaagtaatcatcattgttaatttactttaaacaagtaactaacaatttgctatatggtgccaaaccaagcacgtagc |
50408616 |
T |
|
| Q |
117 |
tgagacagcaaaatgttgcacgcaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
216 |
Q |
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|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408615 |
tgagacagcaaaatgttggacacaagaaaatgccaaagttgaatacacaaaattcattcatgtatagccaaaattagatattataattgattccctatat |
50408516 |
T |
|
| Q |
217 |
ttatcacatgattacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaa-ttgtttttcggttcctagtcat |
315 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
50408515 |
ttatcacatgagtacagtgaaagatgggtattgaaaaagaaagcggtcctatactatagacacaaaaatggattgaatttttttttcggttcctagtcat |
50408416 |
T |
|
| Q |
316 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattgaaacaccaat----------caacattcaacattcaacccctatacatcaatg---- |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
50408415 |
tgtcgtcctagtggtagtgaaatttgcttataaatcaacattcaaacaccaatcaacattcaacaacattcaacattcaacccctatacatcaatgaatc |
50408316 |
T |
|
| Q |
402 |
aatcacatcactgt------------ttcctttcctctcttgccgtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctg |
489 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408315 |
aatcacatcactgtagcttttgcttcttcctttcctctcttgccgtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctg |
50408216 |
T |
|
| Q |
490 |
atcggtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataat |
589 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408215 |
atcggtacctcttgtatatatcacctttataaaacttatttgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataat |
50408116 |
T |
|
| Q |
590 |
aatgaaagacaatctgaaacaacttg |
615 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
50408115 |
aatgaaagacaatctgaaacaacttg |
50408090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 498 - 598
Target Start/End: Complemental strand, 50386178 - 50386078
Alignment:
| Q |
498 |
ctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaag |
597 |
Q |
| |
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||||||||||| |||||||| |||||||| | || || ||||| ||||||||||||| || |||||||| || || || || |||||||||||||||| |
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| T |
50386178 |
ctcttgtatatgtcacctttgtaaaactttctggtcctagccaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtgataataatgaaag |
50386079 |
T |
|
| Q |
598 |
a |
598 |
Q |
| |
|
| |
|
|
| T |
50386078 |
a |
50386078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 494 - 611
Target Start/End: Complemental strand, 50394601 - 50394484
Alignment:
| Q |
494 |
gtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatg |
593 |
Q |
| |
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||||||||||||||| |||||||| |||||||| | || || | ||| ||||||||||||| || |||||||| || || || || || ||||||||| |
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| T |
50394601 |
gtacctcttgtatatgtcacctttgtaaaactttctagtcctagacaccaaaataagtgaaacaacagcaccaaaaaatgttgcagctgtaataataatg |
50394502 |
T |
|
| Q |
594 |
aaagacaatctgaaacaa |
611 |
Q |
| |
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||||| || |||||||| |
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| T |
50394501 |
aaagataacttgaaacaa |
50394484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 510 - 615
Target Start/End: Original strand, 41637862 - 41637967
Alignment:
| Q |
510 |
tcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgataataatgaaagacaatctgaaac |
609 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
41637862 |
tcacgtttataaaacttaattgttctagccactaaaataagtgaaataatggcaccaaacaaagtagctacagtgataataatgaaagacaatttgaaac |
41637961 |
T |
|
| Q |
610 |
aacttg |
615 |
Q |
| |
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|||||| |
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| T |
41637962 |
aacttg |
41637967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 434 - 526
Target Start/End: Original strand, 41637755 - 41637847
Alignment:
| Q |
434 |
gtcattttggaccaccgtcatctcagccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcacctttataaaactt |
526 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41637755 |
gtcattttggaccaccgtcatctcatccgaagctccttcaacttctacctgctctgatcggtacctcttgtatatatcacgtttataaaactt |
41637847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 488 - 615
Target Start/End: Original strand, 39628061 - 39628188
Alignment:
| Q |
488 |
tgatcggtacctcttgtatatatcacctttataaaacttaattgttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcagtgata |
587 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||| | |||||||||| |||||||||| |||||||||||||| |
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| T |
39628061 |
tgatcggtacctcttgtatatatcacgtttataaaacttaattgttctagtcaacaaaattactgaaataatgacaccaaacaagttagctgcagtgata |
39628160 |
T |
|
| Q |
588 |
ataatgaaagacaatctgaaacaacttg |
615 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
39628161 |
gacatgaaagacaatttgaaacaacttg |
39628188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 41638695 - 41638631
Alignment:
| Q |
460 |
ccgtagctccttcaacttcaacctgctctgatcggtacctcttgtatatatcacctttataaaac |
524 |
Q |
| |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
41638695 |
ccgtagctccttcaacttctacctgctctgaccggtacctcttgtatatatcacgtttataaaac |
41638631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 531 - 612
Target Start/End: Complemental strand, 41638221 - 41638137
Alignment:
| Q |
531 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagctgcag---tgataataatgaaagacaatctgaaacaac |
612 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||||| |
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| T |
41638221 |
gttctggccactaaaataagtgaaataatggcaccaaacaaagtagccagagtgatgatgataatgaaagacaatttgaaacaac |
41638137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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