View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_high_6 (Length: 606)
Name: NF16840_high_6
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 252 - 590
Target Start/End: Complemental strand, 11681253 - 11680916
Alignment:
| Q |
252 |
catctcgtagaacatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
351 |
Q |
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| T |
11681253 |
catctcgtagaacatacatagagaagacttcaacctagacaactccatttccaggaaaggactttgacctcttccatcaattcctcaacatctatcccct |
11681154 |
T |
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| Q |
352 |
tatcataagaaaaatcattccatttcgcgcctttcatatagccgcatgcgaaataagccaatagcctttttccaatttcttttaaggacaccatccaaca |
451 |
Q |
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| T |
11681153 |
tatcataa-aaaaatcattccatttcgcgcctttcatatagccgcatgccaaataagccaatagcctttttccaatttcttttaaggacaccatccaaca |
11681055 |
T |
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| Q |
452 |
aatactcagtttgaatcaatgagttcagtggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcag |
551 |
Q |
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| T |
11681054 |
aatactcagtttgaatcaatgagttcagtggtgtgatgagattgacccttaactaagagaatcatttcgcccacaataaggcagtaaccggctagtgcag |
11680955 |
T |
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| Q |
552 |
gaaaaggtgaagggcagtctcctctccattggttcaaaa |
590 |
Q |
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| T |
11680954 |
gaaaaggtgaagggcagtctcctctccattggttcaaaa |
11680916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 11681532 - 11681305
Alignment:
| Q |
16 |
atagtacaagaaggccaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaac--ggaccagcacaccaaaacagaacagcaa |
113 |
Q |
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| T |
11681532 |
atagtacaagaaggccaaaacaagttaaaaagactcggcaacaacagcggtaaaactggtgcgaagaaacaggggccagcacaccaaaacagaacagcaa |
11681433 |
T |
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| Q |
114 |
gcctaaactgctaaaacatcaaagacaaacagtgaaaaccccagcaaaaccagcacaaaccgcagcatctcagcaaaaggtccatgcacccttcagagac |
213 |
Q |
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| T |
11681432 |
gcctaaactgctaaaacatcaaagacaaacagtcaaaaacccagcaaaactagcacaaaccgcagcatcacagcaaaaggtccatgcacccttcagagac |
11681333 |
T |
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| Q |
214 |
agctgaaccaaaacacaaagctacgact |
241 |
Q |
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| T |
11681332 |
agctgaaccaaaacacaaagctacgact |
11681305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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