View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16840_low_1 (Length: 907)
Name: NF16840_low_1
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-172; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 438 - 888
Target Start/End: Original strand, 30941373 - 30941823
Alignment:
| Q |
438 |
atttttcatcacatccacaaatgcctccccctcatcttcttcctcctttttccttcatcatcaatatctgtctcttactctcactcttcttaatcccaat |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||| |||||| || |||||||| |||||||||| |
|
|
| T |
30941373 |
atttttcatcacatccacaaatgcctccccctcttcatcttcaggctttttccttcatcatcaacatctttctcttccttgcactcttcataatcccaat |
30941472 |
T |
|
| Q |
538 |
acatgtcattagtgatgttgaaagctacaaatcttgtgcaccttttatctgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaa |
637 |
Q |
| |
|
|||| ||| |||||| |||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
30941473 |
acatatcactagtgacgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaacgttagttatccattttggagtgttaacaaccaa |
30941572 |
T |
|
| Q |
638 |
ccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttcacatcattgatataaatc |
737 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
30941573 |
ccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaagtcacaaaagtttcacatcattgatataaatc |
30941672 |
T |
|
| Q |
738 |
aaacatctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttaga |
837 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||| || | |||||| ||||||||| ||||||| |||| ||||||| |||| |
|
|
| T |
30941673 |
aaacatctcgacttttgaggattgcccggttggatttatggagtaatgatgctgctactattgtttcttgtcccaagaaatatatcattgtaaacctaga |
30941772 |
T |
|
| Q |
838 |
tttggatttcttcaactacacttccaattatgaaaattataccctattgta |
888 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
30941773 |
tttggatttcttcaactacacttccaagtatgaaaagtatacactattgta |
30941823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 348 - 891
Target Start/End: Original strand, 30983182 - 30983722
Alignment:
| Q |
348 |
ttgatcatttgcctccctaagaaggcctatcatcatttcatcttccggttagactctcttagaattctaaaattagattagatgctttttatttttcat- |
446 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||| |||||||| |||||| | ||||||| |
|
|
| T |
30983182 |
ttgatcatttgcctccctaagaagggctaacatcatttcatcttctagttagactctcatagaattctataattagat-----gcttttcaattttcatg |
30983276 |
T |
|
| Q |
447 |
-cacatccacaaatgcctccccctcatcttcttcctcctttttccttcatcatcaatatctgtctcttactctcactcttcttaatcccaatacatgtca |
545 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30983277 |
tcacatccacaaatgccctcccctcatcatcttttgcctttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtca |
30983376 |
T |
|
| Q |
546 |
ttagtgatgttgaaagctacaaatcttgtgcaccttttatctgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagtta |
645 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||| || ||| |
|
|
| T |
30983377 |
ctagtgatgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaatta |
30983476 |
T |
|
| Q |
646 |
ttgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaacatct |
745 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30983477 |
ttgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaacttca |
30983576 |
T |
|
| Q |
746 |
cgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttggatt |
845 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| ||||||| |||||||||| | |||||| ||| | |
|
|
| T |
30983577 |
caagttttgaggattgcaaggttggatttatggagttatgattctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaat |
30983676 |
T |
|
| Q |
846 |
tcttcaactacacttccaattatgaaaattataccctattgtatga |
891 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
30983677 |
tcttcaattacacttccaattatgagaagtatacgctattatatga |
30983722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 348 - 891
Target Start/End: Original strand, 30989346 - 30989886
Alignment:
| Q |
348 |
ttgatcatttgcctccctaagaaggcctatcatcatttcatcttccggttagactctcttagaattctaaaattagattagatgctttttatttttcat- |
446 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||| |||||||| |||||| | ||||||| |
|
|
| T |
30989346 |
ttgatcatttgcctccctaagaagggctaacatcatttcatcttctagttagactctcatagaattctataattagat-----gcttttcaattttcatg |
30989440 |
T |
|
| Q |
447 |
-cacatccacaaatgcctccccctcatcttcttcctcctttttccttcatcatcaatatctgtctcttactctcactcttcttaatcccaatacatgtca |
545 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30989441 |
tcacatccacaaatgccctcccctcatcatcttttgcctttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtca |
30989540 |
T |
|
| Q |
546 |
ttagtgatgttgaaagctacaaatcttgtgcaccttttatctgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagtta |
645 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||| || ||| |
|
|
| T |
30989541 |
ctagtgatgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaatta |
30989640 |
T |
|
| Q |
646 |
ttgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttcacatcattgatataaatcaaacatct |
745 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30989641 |
ttgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattgaaattaagtcacaaaagtttcacatcattgatataaatcaaacttca |
30989740 |
T |
|
| Q |
746 |
cgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatacatcaatgtaaacttagatttggatt |
845 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| ||||||| |||||||||| | |||||| ||| | |
|
|
| T |
30989741 |
caagttttgaggattgcaaggttggatttatggagttatgattctgctactattgcttcttgtcccaagaaatatatcaatgtaaccctagattcggaat |
30989840 |
T |
|
| Q |
846 |
tcttcaactacacttccaattatgaaaattataccctattgtatga |
891 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
30989841 |
tcttcaattacacttccaattatgagaagtatacgctattatatga |
30989886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 424 - 891
Target Start/End: Original strand, 31009137 - 31009607
Alignment:
| Q |
424 |
attagatgctttttatttttcatcacatccacaaatgcctccccctcatcttcttcctcctttttccttcatcatcaatatctgtctcttactctcactc |
523 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||||||||||| |||| |||| ||| || || |||| |||||||||| |||| |||||| ||||||||| |
|
|
| T |
31009137 |
attagatgcttttaaattttcatcacctccacaaatgcctccacctcttcttattcttcattgttccatcatcatcaacatctttctcttcctctcactc |
31009236 |
T |
|
| Q |
524 |
ttctt---aatcccaatacatgtcattagtgatgttgaaagctacaaatcttgtgcaccttttatctgtggaaacttcaccaatattagttatccatttt |
620 |
Q |
| |
|
||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||| | |||||||| |||||||| ||||||| |
|
|
| T |
31009237 |
ttcttcttaatcccaatacatgtcaatagtgacggtgaaagctacaaatcttgtgcaccttttagatgtggagatttcaccaacattagttacccatttt |
31009336 |
T |
|
| Q |
621 |
ggagtgctaacaaccaaccaagttattgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattgagatcaaatcacaaaagtttca |
720 |
Q |
| |
|
||||| ||||||||| | || ||||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
31009337 |
ggagtattaacaaccatcaaaattattgtggtcatccaaacttcggagttgattgtgaacatggcaacttgactattgaaatcaagtcacaaaagtttca |
31009436 |
T |
|
| Q |
721 |
catcattgatataaatcaaacatctcgacttttgaggattgcacggttggatttatggagttatgatgatgatgctattgcttcttgtccagagaaatac |
820 |
Q |
| |
|
||||||||||||||||||||| || | | |||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| ||||||| |
|
|
| T |
31009437 |
catcattgatataaatcaaacttcacaagttttgaggattgcaaggttggatttatggagttatgattctgctactattgcttcttgtcccaagaaatat |
31009536 |
T |
|
| Q |
821 |
atcaatgtaaacttagatttggatttcttcaactacacttccaattatgaaaattataccctattgtatga |
891 |
Q |
| |
|
|||||||||| | |||||| ||| |||||||| ||||||||||||||||| || ||||| ||||| ||||| |
|
|
| T |
31009537 |
atcaatgtaaccctagattcggaattcttcaattacacttccaattatgagaagtatacgctattatatga |
31009607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 348 - 699
Target Start/End: Original strand, 30976743 - 30977091
Alignment:
| Q |
348 |
ttgatcatttgcctccctaagaaggcctatcatcatttcatcttccggttagactctcttagaattctaaaattagattagatgctttttatttttcat- |
446 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| |||||||||| |||||||| |||||| | ||||||| |
|
|
| T |
30976743 |
ttgatcatttgcctccctaagaagggctaacatcatttcatcttctagttagactctcatagaattctataattagat-----gcttttcaattttcatg |
30976837 |
T |
|
| Q |
447 |
-cacatccacaaatgcctccccctcatcttcttcctcctttttccttcatcatcaatatctgtctcttactctcactcttcttaatcccaatacatgtca |
545 |
Q |
| |
|
|||||||||||||||| ||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30976838 |
tcacatccacaaatgccctcccctcatcatcttttgcctttttccttcatcatcaacatctgtctcttactctcactcttcttaattccaatacatgtca |
30976937 |
T |
|
| Q |
546 |
ttagtgatgttgaaagctacaaatcttgtgcaccttttatctgtggaaacttcaccaatattagttatccattttggagtgctaacaaccaaccaagtta |
645 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||||||||| || ||| |
|
|
| T |
30976938 |
ctagtgatgttgaaagcttcaaatcttgtgcaccttttagttgtggaaatttcaccaatattagttacccattttggagtattaacaaccaacaaaatta |
30977037 |
T |
|
| Q |
646 |
ttgtggccacccaaacttcaaccttgattgtgaacatggcaacttgactattga |
699 |
Q |
| |
|
|||||| || ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30977038 |
ttgtggtcatccaaacttcaaacttgattgtgaacatggcaacttgactattga |
30977091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 30941167 - 30941285
Alignment:
| Q |
24 |
ccttttcttatgctaagtaggccatctcaaaattctacttaattaccttacttcttaggtccttttctacatccttttcacttcataactaatacctttc |
123 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||||| || ||| |||| |||||| |||||||| |||||| ||||| ||||||| |
|
|
| T |
30941167 |
ccttttcttatgccaagtaggccatctcaaaattctactta----ccttacctcctagttcctcttctacttccttttcccttcatcactaacacctttc |
30941262 |
T |
|
| Q |
124 |
tcttcctttaatcttcatatctt |
146 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
30941263 |
tcttcctttaatcttcttatctt |
30941285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University