View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_10 (Length: 475)
Name: NF16840_low_10
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 233 - 461
Target Start/End: Original strand, 225138 - 225364
Alignment:
| Q |
233 |
ccaacatgagcaagataaaccaacttagagagaactaattcatttcaatgagaatcataggatcaattcagtttgatatgtcaaaataaagctgagaagt |
332 |
Q |
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| T |
225138 |
ccaacatgagcaagataaaccaacttagag--aactaattcatttcaatgagaatcataggatcaattcagtttgatatgtcaaaataaagctgagaagt |
225235 |
T |
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| Q |
333 |
ggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagagttgttacgagataaaccaaaagga |
432 |
Q |
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| T |
225236 |
ggcattgtatatggccgcctttactagattatgggaaaccatattaacctctctcataaaaaacgcgacataagagttgttacgagataaaccaaaagga |
225335 |
T |
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| Q |
433 |
cataaagatataagtgtaacaataaaagt |
461 |
Q |
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| T |
225336 |
cataaagatataagtgtaacaataaaagt |
225364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 19 - 161
Target Start/End: Original strand, 224924 - 225066
Alignment:
| Q |
19 |
acatccccttcatgtgcaaggcgtttaagtaagcaaaaggtatgctgattttcttccaaattgtcaagaacagccagccagattcgagatacaagttcat |
118 |
Q |
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| T |
224924 |
acatccccttcatgtgcaaggcgtttaagtaagcaaaaggtatgctgattttcttccaaattgtcaagaacagccagccagattcgagatacaagttcat |
225023 |
T |
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| Q |
119 |
gggctacgtctcttgacttgccgcaagcaataaactgatctgc |
161 |
Q |
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| T |
225024 |
gggctacgtctcttgacttgccgcaagcaataaactgatctgc |
225066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 415
Target Start/End: Original strand, 8746493 - 8746599
Alignment:
| Q |
309 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
408 |
Q |
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| T |
8746493 |
tatgttaaaataaagaagagaactagcattatatacggccgtctttgcaagttcatgagcaaccatattagcctctctcctagaaaactcgacataagag |
8746592 |
T |
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| Q |
409 |
ttgttac |
415 |
Q |
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||||||| |
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| T |
8746593 |
ttgttac |
8746599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 266 - 415
Target Start/End: Original strand, 6954986 - 6955135
Alignment:
| Q |
266 |
actaattcatttcaatgagaatcataggatcaattcagtttgatatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatg |
365 |
Q |
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| T |
6954986 |
actaattcatttcattaaaaatcaaaggatcaatataatcaggtatgtcaaaataaagatgagaattggcattatatacagccacctttgcaagttcatg |
6955085 |
T |
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| Q |
366 |
ggaaaccatattaacctctctcataaaaaacgcgacataagagttgttac |
415 |
Q |
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| T |
6955086 |
agcaaccatattagtctctctcttagaaaactcgacataagagttgttac |
6955135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 28695254 - 28695148
Alignment:
| Q |
309 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
408 |
Q |
| |
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|||||||| |||||| |||||| || |||| ||||||| ||||||||| || | ||| | |||||||||| || |||| || ||||| ||| ||||||| |
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| T |
28695254 |
tatgtcaatataaagatgagaactgacattatatatggtcgcctttgcaagttcatgagcaaccatattagactgtctcctagaaaactcgaaataagag |
28695155 |
T |
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| Q |
409 |
ttgttac |
415 |
Q |
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||||||| |
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| T |
28695154 |
ttgttac |
28695148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 417
Target Start/End: Original strand, 41289773 - 41289882
Alignment:
| Q |
308 |
atatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataaga |
407 |
Q |
| |
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|||| |||||||| || |||||| || |||| ||||||| ||| ||||| |||||||| | || ||||||| | ||||| || |||| |||||||||| |
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| T |
41289773 |
atatatcaaaatagagatgagaattgtcattatatatggtcgcttttgcaagattatgagcaatcatattagcatctcttttagaaaaatcgacataaga |
41289872 |
T |
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| Q |
408 |
gttgttacga |
417 |
Q |
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| T |
41289873 |
gttgttacga |
41289882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 414
Target Start/End: Complemental strand, 32011625 - 32011520
Alignment:
| Q |
309 |
tatgtcaaaataaagctgagaagtggcattgtatatggccgcctttgctagattatgggaaaccatattaacctctctcataaaaaacgcgacataagag |
408 |
Q |
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|||||||||||| | |||||| | |||| | |||||||| ||||| |||||||| |||||||||| |||||||||| ||||| ||||||||||| |
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| T |
32011625 |
tatgtcaaaatatatatgagaatagacattatctatggccgtctttggaagattatgaacaaccatattattctctctcatagaaaactcgacataagag |
32011526 |
T |
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| Q |
409 |
ttgtta |
414 |
Q |
| |
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|||||| |
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| T |
32011525 |
ttgtta |
32011520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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