View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16840_low_12 (Length: 447)

Name: NF16840_low_12
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16840_low_12
NF16840_low_12
[»] chr5 (14 HSPs)
chr5 (9-231)||(39467526-39467749)
chr5 (369-430)||(39467758-39467819)
chr5 (120-170)||(39466885-39466935)
chr5 (126-170)||(35524122-35524166)
chr5 (91-170)||(39937876-39937954)
chr5 (126-180)||(24565563-24565617)
chr5 (126-180)||(24606599-24606653)
chr5 (128-170)||(33087472-33087514)
chr5 (126-170)||(40372164-40372208)
chr5 (131-170)||(27345928-27345967)
chr5 (128-170)||(2029053-2029095)
chr5 (87-165)||(15561415-15561493)
chr5 (128-170)||(23253492-23253534)
chr5 (128-170)||(33086729-33086771)
[»] chr7 (21 HSPs)
chr7 (9-170)||(42818440-42818601)
chr7 (128-170)||(2403447-2403489)
chr7 (66-172)||(30581210-30581316)
chr7 (122-170)||(27918610-27918658)
chr7 (123-170)||(767136-767183)
chr7 (126-173)||(41965781-41965828)
chr7 (128-166)||(36611555-36611593)
chr7 (126-170)||(7329072-7329116)
chr7 (122-170)||(17114145-17114193)
chr7 (133-173)||(33261424-33261464)
chr7 (126-170)||(46491692-46491736)
chr7 (128-171)||(3314954-3314997)
chr7 (120-170)||(42817798-42817848)
chr7 (126-175)||(767970-768019)
chr7 (126-170)||(3849597-3849641)
chr7 (126-170)||(24874582-24874626)
chr7 (126-170)||(28007157-28007201)
chr7 (126-170)||(36611498-36611542)
chr7 (87-171)||(36611703-36611787)
chr7 (120-168)||(37783479-37783527)
chr7 (126-170)||(41358311-41358355)
[»] chr4 (16 HSPs)
chr4 (9-168)||(42793416-42793575)
chr4 (87-170)||(6056964-6057047)
chr4 (120-170)||(34450815-34450865)
chr4 (66-170)||(14527520-14527624)
chr4 (126-170)||(47157383-47157427)
chr4 (126-169)||(47156634-47156677)
chr4 (120-170)||(42792775-42792825)
chr4 (126-165)||(18363657-18363696)
chr4 (123-170)||(34941502-34941549)
chr4 (126-165)||(36599232-36599271)
chr4 (126-176)||(21280029-21280079)
chr4 (128-170)||(24666129-24666171)
chr4 (126-164)||(26354236-26354274)
chr4 (126-171)||(52129420-52129465)
chr4 (126-170)||(13924793-13924837)
chr4 (134-170)||(44841924-44841960)
[»] chr3 (24 HSPs)
chr3 (9-136)||(51921355-51921482)
chr3 (131-170)||(55336-55375)
chr3 (121-174)||(15287563-15287616)
chr3 (118-165)||(54308458-54308505)
chr3 (128-170)||(18745376-18745418)
chr3 (128-170)||(20807937-20807979)
chr3 (128-170)||(47571945-47571987)
chr3 (127-168)||(29516554-29516595)
chr3 (128-165)||(47677526-47677563)
chr3 (128-168)||(18744622-18744662)
chr3 (126-170)||(53344017-53344061)
chr3 (126-165)||(9830577-9830616)
chr3 (128-171)||(47571195-47571238)
chr3 (127-170)||(53346501-53346544)
chr3 (127-170)||(54753577-54753620)
chr3 (128-170)||(4706962-4707004)
chr3 (128-170)||(4948377-4948419)
chr3 (128-170)||(20808613-20808655)
chr3 (128-170)||(49349676-49349718)
chr3 (128-170)||(49350276-49350318)
chr3 (122-171)||(42020886-42020935)
chr3 (126-170)||(17353802-17353846)
chr3 (120-164)||(51920720-51920764)
chr3 (128-172)||(54751794-54751838)
[»] chr8 (19 HSPs)
chr8 (128-170)||(202577-202619)
chr8 (128-170)||(317414-317456)
chr8 (89-171)||(4402254-4402336)
chr8 (120-170)||(19220913-19220963)
chr8 (87-172)||(26847686-26847771)
chr8 (57-170)||(42663933-42664045)
chr8 (126-170)||(22632972-22633016)
chr8 (128-168)||(36180689-36180729)
chr8 (66-170)||(40599887-40599991)
chr8 (126-165)||(22632327-22632366)
chr8 (128-171)||(36182127-36182170)
chr8 (131-170)||(42094753-42094792)
chr8 (128-170)||(16911052-16911094)
chr8 (128-170)||(26847097-26847139)
chr8 (128-170)||(42094009-42094051)
chr8 (89-170)||(35347665-35347746)
chr8 (121-170)||(42663277-42663326)
chr8 (126-170)||(5434032-5434076)
chr8 (126-170)||(35399947-35399991)
[»] chr2 (10 HSPs)
chr2 (66-170)||(20606865-20606969)
chr2 (126-170)||(18537497-18537541)
chr2 (87-170)||(10173936-10174019)
chr2 (131-169)||(44297423-44297461)
chr2 (126-171)||(44296859-44296904)
chr2 (128-172)||(44986810-44986854)
chr2 (128-175)||(127741-127788)
chr2 (126-173)||(7754971-7755018)
chr2 (121-170)||(29387424-29387473)
chr2 (122-170)||(7754012-7754060)
[»] chr1 (16 HSPs)
chr1 (126-175)||(26240875-26240924)
chr1 (90-170)||(27746127-27746206)
chr1 (128-170)||(16449555-16449597)
chr1 (128-170)||(16459129-16459171)
chr1 (126-165)||(5491340-5491379)
chr1 (128-170)||(24847783-24847825)
chr1 (128-170)||(24848432-24848474)
chr1 (128-170)||(26240114-26240156)
chr1 (126-171)||(31116688-31116733)
chr1 (357-402)||(31283795-31283840)
chr1 (129-165)||(2260858-2260894)
chr1 (90-170)||(2261512-2261591)
chr1 (126-170)||(12449316-12449360)
chr1 (126-170)||(13416339-13416383)
chr1 (129-165)||(14166914-14166950)
chr1 (126-170)||(31109239-31109283)
[»] chr6 (4 HSPs)
chr6 (122-173)||(709319-709370)
chr6 (126-170)||(2138477-2138521)
chr6 (128-170)||(13084885-13084927)
chr6 (126-170)||(16718998-16719042)
[»] scaffold0627 (1 HSPs)
scaffold0627 (126-164)||(6470-6508)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 39467526 - 39467749
Alignment:
Q  9 agcagagaaaggagaggaggagggtattgaaaaagatgtgtgatctattgtatacaatgtataataggatgtatatgtttgattaatctaatggttctta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39467526 agcagagaaaggagaggaggagggtattgaaaaagatgtgtgatctagtgtatacaatgtataataggatgtatatgtttgattaatctaatggttctta 39467625  T
Q  109 tttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacccaattattaatatacgtgaaatatacaatgggaacg-a 207  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||| |    
T  39467626 tttgttattataagtgatccaccgatgagggacttaattaaaccctcaccctagaattcactcaattattaatatacgtgaaatatacaatgtgaacgaa 39467725  T
Q  208 aaaaatatatcaatataatatact 231  Q
    ||||| ||||||||||||||||||    
T  39467726 aaaaaaatatcaatataatatact 39467749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 369 - 430
Target Start/End: Original strand, 39467758 - 39467819
Alignment:
Q  369 taacaaactagctattaatatttgtcattcaaaacataaataatgaaatttgttatatttag 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39467758 taacaaactagctattaatatttgtcattcaaaacataaataatgaaatttgttatatttag 39467819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 39466935 - 39466885
Alignment:
Q  120 aagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||||||||||    
T  39466935 aagtggtccaccggtgagggacttaattggaccctcaccctagaattcacc 39466885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 35524166 - 35524122
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||    
T  35524166 tccaccggtgagggacttaattgaactctcatcctagaatccacc 35524122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 39937876 - 39937954
Alignment:
Q  91 ttaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||| ||||||| ||||||    ||| |||||||||||||||||||| |||||||||| |||||||| ||||    
T  39937876 ttaatctaatggctcttatt-gttattcatggtggtccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 24565617 - 24565563
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacccaattattaa 180  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| |||| ||||    
T  24565617 tccaccggtgagggatttaattgaaccctcaccctagaatccaccgaatttttaa 24565563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 24606653 - 24606599
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacccaattattaa 180  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| |||| ||||    
T  24606653 tccaccggtgagggatttaattgaaccctcaccctagaatccaccgaatttttaa 24606599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 33087472 - 33087514
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||| ||||| ||||||||||||||||||||    
T  33087472 caccggtgagggacttgattgatccctcatcctagaattcacc 33087514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 40372164 - 40372208
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||| ||||||||||||||||| |||||||| ||||    
T  40372164 tccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 27345928 - 27345967
Alignment:
Q  131 cggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  27345928 cggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 2029053 - 2029095
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  2029053 caccggtgagggacttaattgagccctcaccctagaatccacc 2029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 15561493 - 15561415
Alignment:
Q  87 ttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    |||||||||||||||||||| | | ||| ||  || || ||||||||||||||||||| | || |||||| ||||||||    
T  15561493 ttgattaatctaatggttctcaatggttgttcgaaatggtccaccggtgagggacttagtagagccctcaccctagaat 15561415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 23253492 - 23253534
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||    
T  23253492 caccggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 33086771 - 33086729
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||| |||||||||||| ||||||||||||||| ||||    
T  33086771 caccggtgaaggacttaattgatccctcatcctagaatccacc 33086729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 9 - 170
Target Start/End: Original strand, 42818440 - 42818601
Alignment:
Q  9 agcagagaaaggagaggaggagggtattgaaaaagatgtgtgatctattgtatacaatgtataataggatgtatatgtttgattaatctaatggttctta 108  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  42818440 agcagagaaaggagaggaggagggtattgaaaaatatgtgtgatctagtgtatacaatgtataataggatgtatatgtttgattaatctaatgattctta 42818539  T
Q  109 tttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  42818540 tttgttattataagtgatccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 2403447 - 2403489
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  2403447 caccggtgagggacttagttgaaccctcatcctagaattcacc 2403489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 30581210 - 30581316
Alignment:
Q  66 tgtataataggatgtatatgtttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    |||||||||| || ||||   |||||| ||||||||| ||||| || || ||   |||| | ||| ||||||||||||||||||||||||| ||||||||    
T  30581210 tgtataatagaatctatactcttgattgatctaatggctcttaattattgtttatagtggttcactggtgagggacttaattgaaccctcaccctagaat 30581309  T
Q  166 tcaccca 172  Q
    |||||||    
T  30581310 tcaccca 30581316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 27918610 - 27918658
Alignment:
Q  122 gtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||||    
T  27918610 gtgatccaccggtgagggacctaattggaccctcatcctaaaattcacc 27918658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 767183 - 767136
Alignment:
Q  123 tgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||||| ||||||| |||||||| ||||    
T  767183 tgatccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 41965781 - 41965828
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacccaa 173  Q
    ||||||||||||||||||||||| ||||||| |||||||| |||||||    
T  41965781 tccaccggtgagggacttaattggaccctcaccctagaatccacccaa 41965828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 166
Target Start/End: Complemental strand, 36611593 - 36611555
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaatt 166  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  36611593 caccggtgagggacttaattgaaccctcaccctagaatt 36611555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 7329072 - 7329116
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||    
T  7329072 tccaccagtgagggacttaattgaaccctcaccctagaagtcacc 7329116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 17114193 - 17114145
Alignment:
Q  122 gtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||| ||||    
T  17114193 gtgattcaccgatgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 33261424 - 33261464
Alignment:
Q  133 gtgagggacttaattgaaccctcatcctagaattcacccaa 173  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  33261424 gtgagggacttaattggaccctcatcctagaatccacccaa 33261464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 46491692 - 46491736
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||| ||||||||||| |||||||| ||||    
T  46491692 tccaccggtgagggacttagttgaaccctcaccctagaatccacc 46491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 3314997 - 3314954
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    ||||||||||||||||||||||||||||| | |||||| |||||    
T  3314997 caccggtgagggacttaattgaaccctcaccgtagaatccaccc 3314954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 42817848 - 42817798
Alignment:
Q  120 aagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||| ||||||| ||||||||||||||| ||| ||| |||||||||||||    
T  42817848 aagtggtccaccgatgagggacttaattggaccatcaccctagaattcacc 42817798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 767970 - 768019
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacccaatt 175  Q
    ||||||||||||||||||||||| ||||||| |||| ||| |||| ||||    
T  767970 tccaccggtgagggacttaattggaccctcaccctaaaatccaccaaatt 768019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 3849641 - 3849597
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||| || ||||| ||||||||||||||| ||||    
T  3849641 tccaccggtgagggatttgattgatccctcatcctagaatccacc 3849597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 24874582 - 24874626
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||| |||||||| |||||||||||||| |||||||| ||||    
T  24874582 tccaccgatgagggacctaattgaaccctcaccctagaatccacc 24874626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 28007201 - 28007157
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||  |||||| |||||||| ||||    
T  28007201 tccaccggtgagggacttaattgctccctcaccctagaatccacc 28007157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 36611498 - 36611542
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||| || ||||||||||||||| |||||||| ||||    
T  36611498 tccaccggtgagagatttaattgaaccctcaccctagaatccacc 36611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 36611703 - 36611787
Alignment:
Q  87 ttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    ||||||||||||| | |||||| ||||| ||   |||| | ||| | ||||||||||||||||||||||| |||| |||| ||||    
T  36611703 ttgattaatctaacgattcttaattgttgtttacagtggttcactgatgagggacttaattgaaccctcaccctaaaatttaccc 36611787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 37783479 - 37783527
Alignment:
Q  120 aagtgatccaccggtgagggacttaattgaaccctcatcctagaattca 168  Q
    ||||| ||||||||||||||||||| | || |||||| |||||||||||    
T  37783479 aagtggtccaccggtgagggacttagtagagccctcaccctagaattca 37783527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 41358355 - 41358311
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||| ||||||||||||||||||| ||||||||| ||||| ||||    
T  41358355 tccatcggtgagggacttaattgatccctcatccaagaatccacc 41358311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 42793416 - 42793575
Alignment:
Q  9 agcagagaaaggagaggaggagggtattgaaaaagatgtgtgatctattgtatacaatgtataataggatgtatatgtttgattaatctaatggttctta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  42793416 agcagagaaaggagaggaggagggtattgaaaaagatgtgtgatctagtgtatacaatgtataatatgatgtatatgtttgattaatctaatagttctta 42793515  T
Q  109 tttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattca 168  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  42793516 tttgttattataagtgatccatcggtgagggacttaattgaatcctcatcctagaattca 42793575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 6056964 - 6057047
Alignment:
Q  87 ttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||| |||||||||||| | ||| ||  ||||| ||||||||||||||||||| | ||||||||| |||||||| ||||    
T  6056964 ttgattaatttaatggttcttaatggttgttcgaagtggtccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 34450865 - 34450815
Alignment:
Q  120 aagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||| |||||||||||||||||||||||| |||||| |||||||||||||    
T  34450865 aagtgctccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 14527520 - 14527624
Alignment:
Q  66 tgtataataggatgtatatgtttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||||| ||| ||| |  |||||||||||||||  ||||| || |||||   |||| | |||||||||||||||||||||| |||||| ||||||||    
T  14527520 tgtataataagatatatgtacttgattaatctaatgactcttaattattattcatagtggttcaccggtgagggacttaattgatccctcaccctagaat 14527619  T
Q  166 tcacc 170  Q
     ||||    
T  14527620 ccacc 14527624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 47157383 - 47157427
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||    
T  47157383 tccaccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 47156677 - 47156634
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcac 169  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  47156677 tccaccgatgagggacttaattgaaccctcaccctagaattcac 47156634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 42792825 - 42792775
Alignment:
Q  120 aagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||| ||||    
T  42792825 aagtgatccatcggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 18363657 - 18363696
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  18363657 tccaccggtgaggaacttaattgaaccctcaccctagaat 18363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 34941549 - 34941502
Alignment:
Q  123 tgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||  |||||||||||||||||||||||| |||||||| ||||    
T  34941549 tgatccactagtgagggacttaattgaaccctcaccctagaatccacc 34941502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 36599271 - 36599232
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  36599271 tccaccggtgaggaacttaattgaaccctcaccctagaat 36599232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 176
Target Start/End: Complemental strand, 21280079 - 21280029
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacccaatta 176  Q
    |||||| || |||||| |||||| |||||||||||||||| ||||||||||    
T  21280079 tccaccagtaagggacctaattggaccctcatcctagaatccacccaatta 21280029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 24666171 - 24666129
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  24666171 caccggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 26354236 - 26354274
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaa 164  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  26354236 tccacctgtgagggacttaattgaaccctcaccctagaa 26354274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 52129465 - 52129420
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    |||||| |||||||||||||||||||||||| | |||||| |||||    
T  52129465 tccaccagtgagggacttaattgaaccctcaccttagaatccaccc 52129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 13924837 - 13924793
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||| |||||||| |||||| |||||||| ||||    
T  13924837 tccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 44841960 - 44841924
Alignment:
Q  134 tgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||  |||||||||||||||||    
T  44841960 tgagggacttaattgaactttcatcctagaattcacc 44841924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 51921355 - 51921482
Alignment:
Q  9 agcagagaaaggagaggaggagggtattgaaaaagatgtgtgatctattgtatacaatgtataataggatgtatatgtttgattaatctaatggttctta 108  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  51921355 agcagagaagggagaggaagagggtattgaaaaagatgtgtgatctagtgtatacaatgtataatatgatgtatatgtttgattaatctaatagttctta 51921454  T
Q  109 tttgttattataagtgatccaccggtga 136  Q
    ||||||||||||||||||||||||||||    
T  51921455 tttgttattataagtgatccaccggtga 51921482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 55336 - 55375
Alignment:
Q  131 cggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55336 cggtgagggacttaattgaaccctcatcctagaattcacc 55375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 15287616 - 15287563
Alignment:
Q  121 agtgatccaccggtgagggacttaattgaaccctcatcctagaattcacccaat 174  Q
    |||| ||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  15287616 agtggtccaccggtgagggacttaattggaccctcaccctagaatccacccaat 15287563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 118 - 165
Target Start/End: Complemental strand, 54308505 - 54308458
Alignment:
Q  118 ataagtgatccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  54308505 ataagtggttcaccggtgagggacttaattgaaccctcaccctagaat 54308458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 18745376 - 18745418
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||| |||||||||||| |||||||||||||    
T  18745376 caccggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 20807979 - 20807937
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  20807979 caccggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 47571945 - 47571987
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  47571945 caccggtgagggacttaattgatccctcaccctagaattcacc 47571987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 168
Target Start/End: Original strand, 29516554 - 29516595
Alignment:
Q  127 ccaccggtgagggacttaattgaaccctcatcctagaattca 168  Q
    |||||||||||||||||||||||||||||| | |||||||||    
T  29516554 ccaccggtgagggacttaattgaaccctcaccgtagaattca 29516595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 165
Target Start/End: Complemental strand, 47677563 - 47677526
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaat 165  Q
    |||| |||||||||||||||||||||||||||||||||    
T  47677563 caccagtgagggacttaattgaaccctcatcctagaat 47677526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 18744662 - 18744622
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattca 168  Q
    |||||||||||||||| ||| ||||||||||||||||||||    
T  18744662 caccggtgagggacttgattaaaccctcatcctagaattca 18744622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 53344061 - 53344017
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  53344061 tccaccggtgagggacttgattgatccctcatcctagaatccacc 53344017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 9830616 - 9830577
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  9830616 tccaccggtgagggacttaattgaaccctcacccgagaat 9830577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 47571238 - 47571195
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    |||||||||||||||||||||| |||||| |||||||| |||||    
T  47571238 caccggtgagggacttaattgatccctcaccctagaatccaccc 47571195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 170
Target Start/End: Original strand, 53346501 - 53346544
Alignment:
Q  127 ccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||||||||||||   |||||||||||    
T  53346501 ccaccggtgagggacttaattgaaccctcactgtagaattcacc 53346544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 54753620 - 54753577
Alignment:
Q  127 ccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||| ||||||||||||||||||||||||| | |||||||||||    
T  54753620 ccactggtgagggacttaattgaaccctcaccgtagaattcacc 54753577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 4706962 - 4707004
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||    
T  4706962 caccggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 4948419 - 4948377
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||  || ||||||||||||||||||    
T  4948419 caccggtgagggacttaattacactctcatcctagaattcacc 4948377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 20808613 - 20808655
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||    
T  20808613 caccggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 49349718 - 49349676
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  49349718 caccggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 49350276 - 49350318
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||| |||||||||||||||||||||| |||||||| ||||    
T  49350276 caccggcgagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 42020886 - 42020935
Alignment:
Q  122 gtgatccaccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    |||||||||||| ||| ||| |||||| ||||||| ||||||||||||||    
T  42020886 gtgatccaccggcgagagacctaattggaccctcaccctagaattcaccc 42020935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 17353846 - 17353802
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||| ||||| ||||||||||||||||||||  ||||||||||||    
T  17353846 tccatcggtgtgggacttaattgaaccctcacactagaattcacc 17353802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 51920764 - 51920720
Alignment:
Q  120 aagtgatccaccggtgagggacttaattgaaccctcatcctagaa 164  Q
    ||||| |||| |||||||||||||||||| ||||||| |||||||    
T  51920764 aagtggtccatcggtgagggacttaattggaccctcaccctagaa 51920720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 54751838 - 54751794
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcaccca 172  Q
    ||||| |||| |||||| |||||||||||||||||||| ||||||    
T  54751838 caccgatgagagacttatttgaaccctcatcctagaatccaccca 54751794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 202619 - 202577
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  202619 caccggtgagggacttaattgaaccctcatcctagaattcacc 202577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 317456 - 317414
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  317456 caccggtgagggacttaattgaaccctcatcctagaattcacc 317414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 4402254 - 4402336
Alignment:
Q  89 gattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    |||||||||||||| |||| |||||| ||  ||||| | ||||||||||||||||||| ||||||||| |||||||| |||||    
T  4402254 gattaatctaatggctcttgtttgttgttcaaagtggttcaccggtgagggacttaatagaaccctcaccctagaatccaccc 4402336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 170
Target Start/End: Complemental strand, 19220963 - 19220913
Alignment:
Q  120 aagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  19220963 aagtggtctaccggtgacggacttaattgaaccctcatcctagaattcacc 19220913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 26847686 - 26847771
Alignment:
Q  87 ttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcaccca 172  Q
    |||||||||||||||  ||||| || |||||   |||| | ||||||||||| |||||||||| ||||||||||||||| ||||||    
T  26847686 ttgattaatctaatgactcttaattattattcatagtggttcaccggtgaggaacttaattgatccctcatcctagaatccaccca 26847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 42663933 - 42664045
Alignment:
Q  57 tgtatacaatgtataataggatgtatatgtttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctca 156  Q
    |||||||| ||||||||| ||  ||| | ||||||||||| ||||  ||||| || || |||  | || |||||| ||||||||||||||||||||||||    
T  42663933 tgtatacagtgtataataagaattatgtatttgattaatcaaatgactcttaattattgttaaga-tggtccaccagtgagggacttaattgaaccctca 42664031  T
Q  157 tcctagaattcacc 170  Q
     |||| ||||||||    
T  42664032 ccctaaaattcacc 42664045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 22632972 - 22633016
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||    
T  22632972 tccaccggtgagggacttaattgatccctcaccctagaatccacc 22633016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 36180729 - 36180689
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattca 168  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  36180729 caccggtgagggacttaattaaaccctcaccctagaattca 36180689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 40599991 - 40599887
Alignment:
Q  66 tgtataataggatgtatatgtttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||||||||| |||  | ||||| |||||||||||||| |  | |||||  |  ||  |||||||||||||||||  ||||||||||||||||||||    
T  40599991 tgtataataggatctatgagattgatgaatctaatggttctcaactattattcaagatggaccaccggtgagggacttgtttgaaccctcatcctagaat 40599892  T
Q  166 tcacc 170  Q
     ||||    
T  40599891 ccacc 40599887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 22632366 - 22632327
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  22632366 tccaccggtgagggacttaattgatccctcaccctagaat 22632327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 171
Target Start/End: Original strand, 36182127 - 36182170
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    ||||||||||||||||||||||||||||  | ||||||||||||    
T  36182127 caccggtgagggacttaattgaaccctcgccatagaattcaccc 36182170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 170
Target Start/End: Original strand, 42094753 - 42094792
Alignment:
Q  131 cggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||| |||||| |||||||||||||    
T  42094753 cggtgagggacttaattgatccctcaccctagaattcacc 42094792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 16911052 - 16911094
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  16911052 caccggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 26847139 - 26847097
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||| ||||||| |||||||| ||||    
T  26847139 caccggtgagggacttaattggaccctcaccctagaatccacc 26847097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 42094051 - 42094009
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  42094051 caccggtgagggacttaattgatccctcaccctagaatccacc 42094009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 170
Target Start/End: Complemental strand, 35347746 - 35347665
Alignment:
Q  89 gattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||   |||| |||||| ||  ||||| | ||||||| ||||||||||| |||||||||||||| ||| ||||    
T  35347746 gattaatctaataactcttgtttgttgttcaaagtggttcaccggtaagggacttaatagaaccctcatcctaaaatccacc 35347665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 42663326 - 42663277
Alignment:
Q  121 agtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||| |||||||||| || |||| |||||||| ||||    
T  42663326 agtgatccaccggtgagagacttaattggactctcaccctagaatccacc 42663277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 5434076 - 5434032
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||| ||||||||||| ||||||| |||||||| ||||    
T  5434076 tccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 35399947 - 35399991
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||| || ||||| ||||||||||||||| ||||    
T  35399947 tccaccggtgagggatttgattgatccctcatcctagaatccacc 35399991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 20606865 - 20606969
Alignment:
Q  66 tgtataataggatgtatatgtttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    |||||||||| || ||||   |||||| ||||||||| ||||| || || ||   |||| | ||||||||||||||||||||||||||||| ||||||||    
T  20606865 tgtataatagaatctatactcttgattgatctaatggctcttaattattgtttatagtggttcaccggtgagggacttaattgaaccctcaccctagaat 20606964  T
Q  166 tcacc 170  Q
    |||||    
T  20606965 tcacc 20606969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 18537497 - 18537541
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 87 - 170
Target Start/End: Complemental strand, 10174019 - 10173936
Alignment:
Q  87 ttgattaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||| |||| |||||| ||  | ||| | ||||||||||||||||||  ||||||||| |||||||| ||||    
T  10174019 ttgattaatctaatggctcttgtttgttgttcaaggtggttcaccggtgagggacttaacagaaccctcaccctagaatccacc 10173936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 44297423 - 44297461
Alignment:
Q  131 cggtgagggacttaattgaaccctcatcctagaattcac 169  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  44297423 cggtgagggacttaattgaaccctcaccctagaattcac 44297461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 44296904 - 44296859
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    |||||| |||||||||||||||| ||||||| ||||||||||||||    
T  44296904 tccaccagtgagggacttaattggaccctcaccctagaattcaccc 44296859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 44986854 - 44986810
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcaccca 172  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||    
T  44986854 caccgatgagggacttaattgatccctcaccctagaattcaccca 44986810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 127741 - 127788
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacccaatt 175  Q
    ||||||||| ||||||||||||||||||| |||||||| |||| ||||    
T  127741 caccggtgaaggacttaattgaaccctcaccctagaatccacctaatt 127788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 7754971 - 7755018
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacccaa 173  Q
    ||||||||||| |||||||||||| |||||| |||||||| |||||||    
T  7754971 tccaccggtgaaggacttaattgatccctcaccctagaatccacccaa 7755018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 29387473 - 29387424
Alignment:
Q  121 agtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||| ||||||||||||| ||||||| |  ||||||||||||||||||||    
T  29387473 agtggtccaccggtgaggaacttaatagctccctcatcctagaattcacc 29387424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 7754060 - 7754012
Alignment:
Q  122 gtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||| ||||||| |||||| ||||||| |||||||| ||||    
T  7754060 gtgatccaccggggagggacctaattggaccctcaccctagaatccacc 7754012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 26240875 - 26240924
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacccaatt 175  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  26240875 tccaccggtgagggacttaattgaaccctcaccctagaatccacctaatt 26240924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 27746127 - 27746206
Alignment:
Q  90 attaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||| ||||||| ||||||    ||||||||| |||||||||||||||||||||||||  ||||||| ||||    
T  27746127 attaatctaatggctcttatt-gttattcacggtgatccactggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 16449597 - 16449555
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  16449597 caccggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 16459171 - 16459129
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||||||||||||| |||||||| ||||    
T  16459171 caccggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 5491340 - 5491379
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaat 165  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  5491340 tccaccggtgagggacctaattggaccctcatcctagaat 5491379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 24847825 - 24847783
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||    
T  24847825 caccggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 24848432 - 24848474
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||||||||| ||||||||| |||||||| ||||    
T  24848432 caccggtgagggacttaatagaaccctcaccctagaatccacc 24848474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Complemental strand, 26240156 - 26240114
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||| |||||| |||||||| ||||    
T  26240156 caccggtgagggacttaattgatccctcaccctagaatccacc 26240114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 31116688 - 31116733
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcaccc 171  Q
    |||||||||||||||| |||||| ||||||| |||||||| |||||    
T  31116688 tccaccggtgagggacctaattggaccctcaccctagaatccaccc 31116733  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 402
Target Start/End: Original strand, 31283795 - 31283840
Alignment:
Q  357 taaatattaacctaacaaactagctattaatatttgtcattcaaaa 402  Q
    |||||||||| ||||||||||| ||| |||||||||||||| ||||    
T  31283795 taaatattaatctaacaaactaactactaatatttgtcattaaaaa 31283840  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 2260894 - 2260858
Alignment:
Q  129 accggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  2260894 accggtgagggacttgattgaaccctcaccctagaat 2260858  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 2261512 - 2261591
Alignment:
Q  90 attaatctaatggttcttatttgttattataagtgatccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    ||||||||||||| ||||||| ||||||    ||| | ||| |||||||| |||||||||||||||| |||| ||||||||    
T  2261512 attaatctaatggctcttatt-gttattcatggtggttcactggtgaggggcttaattgaaccctcaccctaaaattcacc 2261591  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 12449316 - 12449360
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||| |||||| |||| ||| ||||    
T  12449316 tccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 13416339 - 13416383
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||| ||||||| |||||| |||||||||||||||| ||||    
T  13416339 tccaccggcgagggacctaattggaccctcatcctagaatccacc 13416383  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 14166914 - 14166950
Alignment:
Q  129 accggtgagggacttaattgaaccctcatcctagaat 165  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  14166914 accggtgagggacttaattgagccctcaccctagaat 14166950  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 31109283 - 31109239
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||| |||||| ||||||| |||||||| ||||    
T  31109283 tccaccggtgagggacctaattggaccctcaccctagaatccacc 31109239  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 709370 - 709319
Alignment:
Q  122 gtgatccaccggtgagggacttaattgaaccctcatcctagaattcacccaa 173  Q
    |||||||| ||||||||||  |||||| ||||||||||||||||||||||||    
T  709370 gtgatccatcggtgagggatctaattggaccctcatcctagaattcacccaa 709319  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2138521 - 2138477
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||    
T  2138521 tccaccggtgagggacctaattggaccctcaccctagaattcacc 2138477  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 13084885 - 13084927
Alignment:
Q  128 caccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||| |||||| ||||||||||| |||||||||||||    
T  13084885 caccggtgagagacttagttgaaccctcaccctagaattcacc 13084927  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 16718998 - 16719042
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaattcacc 170  Q
    |||||||||||||||||||||||| || ||| |||||||| ||||    
T  16718998 tccaccggtgagggacttaattgatccgtcaccctagaatccacc 16719042  T

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Target: scaffold0627 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 6508 - 6470
Alignment:
Q  126 tccaccggtgagggacttaattgaaccctcatcctagaa 164  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  6508 tccatcggtgagggacttaattgaaccctcaccctagaa 6470  T

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