View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_13 (Length: 447)
Name: NF16840_low_13
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 2712828 - 2712398
Alignment:
| Q |
1 |
agtgttcagtaataaggtagacttatattgtatgcatattttattcttatatacttcaattgggaatgacaggtaaaatgactcaaattggtttttactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2712828 |
agtgttcagtaataaggtagacttatattgtatgcatattttattcttatatacttcaattgggaatgacaggtaaaatgactcaaattggtttttactt |
2712729 |
T |
|
| Q |
101 |
tgggttgggtctacagatatcatcacttcattttgtcaatctgaagatgaatcagaaaagatcaagatgaagcaaagttctgcatgatgatgttaacatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2712728 |
tgggttgggtctacagatatcatcacttcattttgtcaatctgaagatgaatcagaaaagatcaagatgaagcaaagttctgcatgatgatgttaacatg |
2712629 |
T |
|
| Q |
201 |
ggatcataaatataggctttttaggtttgactctcatgagcttaagttttaacataatgacattaaccatcaaaatcgttgtagttgtcaaatttatgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2712628 |
ggatcataaatataggctttttaggtttgactctcatgagcttaagttttaacataatgacattaaccatcaaaatcgttgtagttgtcaaatttatgta |
2712529 |
T |
|
| Q |
301 |
tcaaaaatatattttacgttttatcaatgtgcgcgtggaaaactttatatactgcaaactaaaagaagtctctgtttaaagaagtaagggagcataaatg |
400 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2712528 |
tcaaaaatatattttatgttttatcaatgtgcgcgtggaaaactttatatactgcaaactaaaagaagtctctgtttaaagaagtaagggagcataaatg |
2712429 |
T |
|
| Q |
401 |
cattatatattttcagttttcactaccaact |
431 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2712428 |
cattatatattttcagttttcactaccaact |
2712398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7326587 - 7326688
Alignment:
| Q |
1 |
agtgttcagtaataaggtagacttatattgtatgcatattttattcttatatacttcaattgggaatgacaggtaaaatgactcaaattggtttttactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
7326587 |
agtgttcagtaataaggtagacttatattgtgtgcatattttattctcatatactccaattggtaatgacaggtaaaatgattcaaattggtttttactt |
7326686 |
T |
|
| Q |
101 |
tg |
102 |
Q |
| |
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|| |
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|
| T |
7326687 |
tg |
7326688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 7326732 - 7326798
Alignment:
| Q |
100 |
ttgggttgggtctacagatatcatcacttcattttgtcaatctgaagatgaatcagaaaagatcaag |
166 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7326732 |
ttgggttgggtctatagatttcatcacttcattttgtcaatctgaagatgaatcaaaaaagatcaag |
7326798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 7327017 - 7327070
Alignment:
| Q |
377 |
taaagaagtaagggagcataaatgcattatatattttcagttttcactaccaact |
431 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
7327017 |
taaagaagtaagggagcataaatgca-tatatattttcagttttcactatcaact |
7327070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 39433734 - 39433673
Alignment:
| Q |
105 |
ttgggtctacagatatcatcacttcattttgtcaatctgaagatgaatcagaaaagatcaag |
166 |
Q |
| |
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||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
39433734 |
ttgggtctatagatttcatcacttcattttgtcaatctgaagatgaatcaaaaaaggtcaag |
39433673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 39433874 - 39433778
Alignment:
| Q |
5 |
ttcagtaataaggtagacttatattgtatgcatattttattcttatatacttcaattgggaatgacaggtaaaatgactcaaattggtttttactttg |
102 |
Q |
| |
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|||||||||||| ||||||| || |||| |||||||||| ||| ||||| | | || ||||||| ||||||||||||||||||||||||| |||| |
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| T |
39433874 |
ttcagtaataagatagactt-taatgtaagcatattttactctcatatattgtatatgtaaatgacaagtaaaatgactcaaattggtttttattttg |
39433778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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