View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_14 (Length: 425)
Name: NF16840_low_14
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 935791 - 935393
Alignment:
| Q |
14 |
agggggctgtgatggagcaaaatattatgatggagcgactttctatttcttccaaagaagagatcattgatttgaaccaaatcacactccgaccttttaa |
113 |
Q |
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| T |
935791 |
agggggctgtgatggagcaaaatattatgatagagcgactttctatttcttccaaagaagagatcattgatttgaaccaaatcacactccgatcttttaa |
935692 |
T |
|
| Q |
114 |
tctttctgacctcgttgatctcatggtgtggcacactgatgaaaaagtggccaagttctggggggaaccttacaccagcaaagaccaaggcatcaacttc |
213 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
935691 |
tctttctgacctcgatgatctcatggtgtggcacactgatgaaaaagtggccaagttctggggggaaccttacaccagcaaagaccaaggcatcaacttc |
935592 |
T |
|
| Q |
214 |
atcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgccataacgatcatgctattgggtgtattaagttgtcctccagttcactttatgaca |
313 |
Q |
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| T |
935591 |
atcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgccataacgatcatgctattgggtgtattaagttgtcctccagttcactttatgaca |
935492 |
T |
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| Q |
314 |
agagtaggaacagatgtgcagaaattgggtatgttctagcctctaaatattggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggttg |
412 |
Q |
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| T |
935491 |
agagtaggaacagatgtgcagaaattgggtatgttctagcctctaaatattggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggttg |
935393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 68 - 411
Target Start/End: Complemental strand, 926284 - 925938
Alignment:
| Q |
68 |
aagaagagatcattgatttgaaccaaatcacactccgaccttttaatctttctgacctcgttgatctcatggtgtggcacactgatgaaaaagtggccaa |
167 |
Q |
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| T |
926284 |
aagaagagatcatcgatttgaaccaaatcacactccgatcctttaatctttctgaccttgatgatgtaatggtgtggcagactgatgaaaaagtggccaa |
926185 |
T |
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| Q |
168 |
gttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtat---ctacgttgcaaagcaatatgccataac |
264 |
Q |
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| T |
926184 |
gttctggggggaaccttacaccagcaaagaccaaggcatcaacttcattgaaaatatagaaagtgaatatctactacaatgcaaagcaatatgccataat |
926085 |
T |
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| Q |
265 |
gatcatgctattgggtgtattaagttgtcctccagttcactttatgacaagagtaggaacagatgtgcagaaattgggtatgttctagcctctaaatatt |
364 |
Q |
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| T |
926084 |
gatcatgttattgggtgtattaagttgttctcgagttcacttcatgataagagcaggtacaaatgtgcagaaattggttatgttctagcctctaaatact |
925985 |
T |
|
| Q |
365 |
ggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggtt |
411 |
Q |
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| T |
925984 |
ggggtaaagggattgccacgtgtgctgtgaaacaaatggttatggtt |
925938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 78 - 412
Target Start/End: Complemental strand, 939519 - 939182
Alignment:
| Q |
78 |
cattgatttgaaccaaatcacactccgaccttttaatctttctgacctcgttgatctcatggtgtggcacactgatgaaaaagtggccaagttctg---g |
174 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
939519 |
cattgatttgaaccaaatcacactccgaccttttcatctttctgaccttgatgatctcatggtatggagaactgatgaaaaagtggccaagttctgctct |
939420 |
T |
|
| Q |
175 |
ggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgccataacgatcatgcta |
274 |
Q |
| |
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||||||| |||||||||||||| |||||||||| |||||| ||||||| || ||||| |||| | |||||||||||||||| |||| ||| ||||| |
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| T |
939419 |
tgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatataccaaacaagtttctatggtgcaaagcaatatgccttaacaatcgtgcta |
939320 |
T |
|
| Q |
275 |
ttgggtgtattaagttgtcctccagttcactttatgacaagagtaggaacagatgtgcagaaattgggtatgttctagcctctaaatattggggtaaagg |
374 |
Q |
| |
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|||| || || || || || |||| | |||| || || ||||||| | ||||||| ||| |||||||||||||||||||| ||||||||||| |
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| T |
939319 |
ttggccgtgtttctctgaaatcaagatcacctcatgataaaagcaggaacaaaactgcagaacttgcctatgttctagcctctaaatactggggtaaagg |
939220 |
T |
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| Q |
375 |
gattgccacatgtgctgtgaaacaaatggttaaggttg |
412 |
Q |
| |
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|| ||||| | || |||||||||| | |||||||||| |
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| T |
939219 |
aatagccacgtatgttgtgaaacaagtagttaaggttg |
939182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 65 - 412
Target Start/End: Complemental strand, 924252 - 923902
Alignment:
| Q |
65 |
ccaaagaagagatcattgatttgaaccaaatcacactccgaccttttaatctttctgacctcgttgatctcatggtgtggcacactgatgaaaaagtggc |
164 |
Q |
| |
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|||||||||||| |||||| | | |||||||||||||||||| |||||||||||||||| | |||||||||| | ||| ||||||||||||||||| |
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| T |
924252 |
ccaaagaagagagaattgatctaacccaaatcacactccgaccccttaatctttctgaccttgatgatctcatgatatggacaactgatgaaaaagtggc |
924153 |
T |
|
| Q |
165 |
caagttctggg---gggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgccat |
261 |
Q |
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||||||||| |||||| ||||||||||| || | |||||||||||||| ||||||| || ||||| |||| | ||||||||||||||| |
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| T |
924152 |
caagttctgctcttgggaactctacaccagcaaggatgatggcatcaacttcattgaaaatattgctaccaagtttctatggtgcaaagcaatatgcatc |
924053 |
T |
|
| Q |
262 |
aacgatcatgctattgggtgtattaagttgtcctccagttcactttatgacaagagtaggaacagatgtgcagaaattgggtatgttctagcctctaaat |
361 |
Q |
| |
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|| |||| ||| ||||||||| || | ||||| ||||||| | ||| || ||||||| |||||||||| |||| |||||||||| |||||||| |
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| T |
924052 |
aatgatcgtgcaattgggtgtgtttctctatcctcgagttcacctggtgataaatccaggaacaaatgtgcagaacttggctatgttctaggctctaaat |
923953 |
T |
|
| Q |
362 |
attggggtaaagggattgccacatgtgctgtgaaacaaatggttaaggttg |
412 |
Q |
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|||||||||||||| ||||||| |||| |||||||||| |||||||||||| |
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| T |
923952 |
attggggtaaaggggttgccacttgtgttgtgaaacaagtggttaaggttg |
923902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 66 - 408
Target Start/End: Complemental strand, 928606 - 928267
Alignment:
| Q |
66 |
caaagaagagatcattgatttgaaccaaatcacactccgaccttttaatctttctgacctcgttgatctcatggtgtggcacactgatgaaaaagtggcc |
165 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| | |||| | ||||||||||| ||||||||||| |||||| |
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| T |
928606 |
caaagaagaaatcattgatttgaaccaaatcacactccgatcctttaatctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaggtggcc |
928507 |
T |
|
| Q |
166 |
aagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagtatctacgttgcaaagcaatatgccata |
262 |
Q |
| |
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|||||||| |||||||||||||||||| ||| | |||||||||||||| ||| ||| | | |||||| ||| ||||||||||||||||| || |
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| T |
928506 |
aagttctgctcttgggaaccttacaccagcagagaagatggcatcaacttcatagaaagtatagaaagcaagtttctttgttgcaaagcaatatgcatta |
928407 |
T |
|
| Q |
263 |
acgatcatgctattgggtgtattaagttgtcctccagttcactttatgacaagagtaggaacagatgtgcagaaattgggtatgttctagcctctaaata |
362 |
Q |
| |
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| |||| ||||||||| ||| || |||| | ||| | | || || || ||||| || ||||||| |||| ||| |||| ||||||||| |
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| T |
928406 |
atgatcgtgctattggctgtgttcttttgttc------acacctgaagataaaagcaggaaacaatctgcagaacttggctataatctaagctctaaata |
928313 |
T |
|
| Q |
363 |
ttggggtaaagggattgccacatgtgctgtgaaacaaatggttaag |
408 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
928312 |
ttggggtaaagggattgtcacatgtgctgtgaaacaaattgttaag |
928267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 319 - 412
Target Start/End: Complemental strand, 940308 - 940214
Alignment:
| Q |
319 |
aggaacagatgtgcagaaattgggtatgttctagcctctaaatattggg-gtaaagggattgccacatgtgctgtgaaacaaatggttaaggttg |
412 |
Q |
| |
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||||||| ||||| |||| |||| |||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| | |||||||||| |
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| T |
940308 |
aggaacaaatgtgtagaacttggctatgttctaggctataaatattgggtgtaaagggatttccacatgtgctgtgaaacaagtagttaaggttg |
940214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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