View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_17 (Length: 402)
Name: NF16840_low_17
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 384
Target Start/End: Complemental strand, 43296413 - 43296033
Alignment:
| Q |
10 |
agaagcaaaggtagaatgaacaaaaacacgttatatcagaagtagaacaaagtgttttgtgttttagttataaattataataatgcctttaaaattggcg |
109 |
Q |
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| T |
43296413 |
agaagcaaaagtagaatgaacaaaaacacgttatatcagaagtagaacaaagtgttttgtgttttagttataaattataataatgcctttaaaattggcg |
43296314 |
T |
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| Q |
110 |
agttgcttcagcaaatttaatgcttccgagttctaacagcaagttacacgattgacacaagacataaaaaatgagtacatctatctatatttacaaattt |
209 |
Q |
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| T |
43296313 |
agttgcttcagcaaatttaatgcttccaagttctaacagcaagttacacaattgacacaagacataaaaaatgagtacatctatctatatttacaaattt |
43296214 |
T |
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| Q |
210 |
ctgaaagtgtcaaattgtacatcttacaaataaatagagagagatttgcacaatattgggagcttctttcaattgtctttatctcctctatttttgacaa |
309 |
Q |
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| T |
43296213 |
ctgaaagtgtcaaattgtacatcttacaaataaatagagagagatttgcacaatattgggagcttctttcaattgtctttatctcctctatttttgacaa |
43296114 |
T |
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| Q |
310 |
tagtacatgtcagtgttcttgtcgtgtccgatttctgtgtcacaatatgtgctt------catagttgttaagttgtctat |
384 |
Q |
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| T |
43296113 |
tagtacatgtcagcgttcttgtcgtgtccgatttctgtgtcacaatatgtgcttcaaagccatagttgttaagttgtctat |
43296033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 43267710 - 43267643
Alignment:
| Q |
194 |
ctatatttacaaatttctgaaagtgtcaaattgtacatcttacaaataaatagagagagatttgcaca |
261 |
Q |
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| T |
43267710 |
ctatatttacaaacttctgaaagtgtcaagttgtacatcttacaaacaaaaagagagagctttgcaca |
43267643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 43269178 - 43269138
Alignment:
| Q |
73 |
ttagttataaattataataatgcctttaaaattggcgagtt |
113 |
Q |
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|||||||||||||||||||||||||||||||| || ||||| |
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| T |
43269178 |
ttagttataaattataataatgcctttaaaatgggagagtt |
43269138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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