View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_18 (Length: 375)
Name: NF16840_low_18
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 51296591 - 51296894
Alignment:
| Q |
1 |
tcatcaataaatgtacattagaatgacaaggtagtgaggtaccattttaaattggaatatcattcctgcagcatcttgtacaagaaccaatgtttatcct |
100 |
Q |
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| T |
51296591 |
tcatcaataaatgtacattagaatgagaaggt--------accattttaaattggaatatcattcctgcagcatcttgtacaagaaccaatgtttatcct |
51296682 |
T |
|
| Q |
101 |
ttgaatcgcatggcttctaagtagcacaaagctactttcagtgtcgggaataacacacaattatatttgtcacttcttggttcttcttacatcatttcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51296683 |
ttgaatcgcatggcttctaagtagcacaaagctactttcagtgtcgggaataacactcaattatatttgtcacttcttggttcttcttacatcatttcac |
51296782 |
T |
|
| Q |
201 |
ccaaaattttatgctatatgtttggtaaactataatacatgtaaccaacaattcactttttctccacatggaatgaatttttactacttttattggaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51296783 |
ccaaaattttatgctatatgtttggtaaactatagtacatataaccaacaattcactttttccccacatggaatgaatttttactacttttattggaaat |
51296882 |
T |
|
| Q |
301 |
ttcttagaggtg |
312 |
Q |
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|||||||||||| |
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| T |
51296883 |
ttcttagaggtg |
51296894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 365
Target Start/End: Original strand, 51297218 - 51297248
Alignment:
| Q |
335 |
gatgcaattagtcgatcaccgtctgatgatg |
365 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
51297218 |
gatgcaattagtcgatcaccgtctgatgatg |
51297248 |
T |
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