View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_19 (Length: 337)
Name: NF16840_low_19
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 327
Target Start/End: Complemental strand, 11374004 - 11373696
Alignment:
| Q |
19 |
gccactggtaaacacttatgtggagctgcaacaggtaatgtatgcaatttaaatatacactctgatgaaattcatagtgatgttttattgatgaaaacat |
118 |
Q |
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| T |
11374004 |
gccactggtaaacacttatgtggagctgcaacaggtaatttatgcaatttaaatatacactctgatgaaattcatagtgatgttttattgatgaaaacat |
11373905 |
T |
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| Q |
119 |
aaatgatttatgtaaattttctaattagaaaatggttatccaattgtttcctcagatttgactttgagatgctgctttcctgaatatagaaaagatagta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11373904 |
aaatgatttatgtaaattttctaattagaaaatggttatccaattgtttcctcagatttgactttgagatgctgctttcctgaatatagaaaagatagta |
11373805 |
T |
|
| Q |
219 |
gtgaacagaacattactaatattaattttggaggtttagctatagcaacatgttgtcaccatctttgccagtggaagcactatacaagtaatcttcttct |
318 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11373804 |
gtgaacagaacattactaatattaattttgaaggtttagctatagcaacatgttgtcaccatctttgccagtggaagcactatacaagtaatcttcttct |
11373705 |
T |
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| Q |
319 |
ttacctatg |
327 |
Q |
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||||||||| |
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| T |
11373704 |
ttacctatg |
11373696 |
T |
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