View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16840_low_22 (Length: 312)
Name: NF16840_low_22
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_22 |
 | |
|
| [»] scaffold0421 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 30229209 - 30229493
Alignment:
| Q |
18 |
aaaacatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30229209 |
aaaacatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaat |
30229308 |
T |
|
| Q |
118 |
attgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgtgagagagatttgatgtaacacttcaactagaca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30229309 |
attgtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgtgagagagatttgatgtaacacttcaactagaca |
30229408 |
T |
|
| Q |
218 |
ctgagctaccaaaagcccaaggttgcaccatgatttatactatactagttgcaattattacagttgtatatagttggtgcctttg |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30229409 |
ctgagctaccaaaagcccaaggttgcaccatgatttatactatactagttgcaattattacagttgtatatagttggtgcctttg |
30229493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 30049101 - 30049264
Alignment:
| Q |
21 |
acatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
30049101 |
acatctttgagcaaaggtatagctaatgaattatcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtatt |
30049200 |
T |
|
| Q |
121 |
gtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgt |
184 |
Q |
| |
|
| |||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
30049201 |
gaccatgaggactcactggctcttgaacttcttcattgaatttgtccattatggtgtggtgtgt |
30049264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 30063442 - 30063605
Alignment:
| Q |
21 |
acatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatatt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
30063442 |
acatctttgagcaaaggtatagctaatgaattatcaaatggaatagctaattccaaaaaggcaaaaacatatgaacatatcacagagctgttgaagtatt |
30063541 |
T |
|
| Q |
121 |
gtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgtgt |
184 |
Q |
| |
|
| |||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||| |
|
|
| T |
30063542 |
gaccatgaggactcactggctcttgaacttcttcattgaatttgtccattatggtgtggtgtgt |
30063605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 30033001 - 30033153
Alignment:
| Q |
21 |
acatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatatt |
120 |
Q |
| |
|
||||||||||||||||||||| | | ||| |||||||||||||| || || |||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
30033001 |
acatctttgagcaaaggtataaccagtgagttatcaaatggaatagcaaactccagaaagccaaaaacatatgaacatatgacagagctgttgaaatatt |
30033100 |
T |
|
| Q |
121 |
gtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatg |
173 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || |||| |||||||||||| |
|
|
| T |
30033101 |
gtccatggggactcactggctcttgaacttcttcatagaacttgtccattatg |
30033153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 30219863 - 30219702
Alignment:
| Q |
21 |
acatctttgagcaaaggtatagctaatgaattatcaaatggaatcgctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatatt |
120 |
Q |
| |
|
|||||||| |||||||| |||| | ||| | ||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
30219863 |
acatctttaagcaaaggcatagtttgtgagtcatcaattggaatagctaattccagaaacccaaaaacatatgaacatatcacagagctattgaaatatt |
30219764 |
T |
|
| Q |
121 |
gtccatgaggactcactggctcttgaacttctccaaagaatttgtccattatgctgtggtgt |
182 |
Q |
| |
|
||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
30219763 |
gtccatgtggactcactggctcttgaacttcttcattgaatttgtccattatgctgtggtgt |
30219702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 13830 - 13769
Alignment:
| Q |
66 |
gctaattccagaaagccaaaaacatatgaacacatcacagagctgttgaaatattgtccatg |
127 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||| |
|
|
| T |
13830 |
gctaattccagaaagccaaaaacaaatgcacatattacagagctgttgaaatattgtccatg |
13769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University