View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_24 (Length: 301)
Name: NF16840_low_24
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 24309552 - 24309357
Alignment:
| Q |
1 |
aatatacatagtccatccagattcactactatgacattcctcttcacttgctaagaaaatgtgatgaggtggctccatcctaagaagaaaacaaaaattg |
100 |
Q |
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| T |
24309552 |
aatatacatggtccatccagattcactactatgacattcctcttcacttgctaagaaaatgtgatgaggtggctccatcctaagaagaaaacaaaaattg |
24309453 |
T |
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| Q |
101 |
tatgttaggttttgtttttgagaatgttaaatagcaccaaccaaagcatt--taaatagaaggaattgaactactatgtctcttatgaagggtacc |
194 |
Q |
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| T |
24309452 |
tatgttaggttttgtttttgagaatggtaaataaatagaaccaaagaatttatatatagaaggaattgaactactatgtctcttatgaagggtacc |
24309357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 24309307 - 24309262
Alignment:
| Q |
244 |
ctatagaagtgttctgaacacctgaaaatacttatcccttcatctc |
289 |
Q |
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| T |
24309307 |
ctatagaagtgttctgaacacctgaaaatacttatcccttcatctc |
24309262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 45887821 - 45887869
Alignment:
| Q |
1 |
aatatacatagtccatccagattcactactatgacattcctcttcactt |
49 |
Q |
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||||||||| |||||||| |||||||| || | |||||||||||||||| |
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| T |
45887821 |
aatatacatggtccatcccgattcactgctttcacattcctcttcactt |
45887869 |
T |
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