View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16840_low_25 (Length: 300)
Name: NF16840_low_25
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_25 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 300
Target Start/End: Original strand, 43141919 - 43142204
Alignment:
| Q |
16 |
atatattttagtaatgtgcaaattggtttgtaacatgatgactttt-ttgttggtgaattatgaatgtatgttacctgcaagaacttaatgatgttgcta |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43141919 |
atatattttagtaatgtgcaaattggtttgtaacatgatgattttttttgttggtgaattatgaatgtatgttacctgcaagaacttaatgatgttgcta |
43142018 |
T |
|
| Q |
115 |
gctccaaagactctatgagcaatggtgaacttgagtggatcagttggaggaaaatacggagctaacacacacttttcaacacacctgcgacggagaatct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43142019 |
gctccaaagactctatgagcaatggtgaacttgagtggatcagttggaggaaaatacggagctaacacacacttttcaacgcacctgcgacggagaatct |
43142118 |
T |
|
| Q |
215 |
tgcaggcagcacaagggctaacaataattggtggtggaggagatggtggttgaggagcagcagagggaggagaatattgagaaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43142119 |
tgcaggcagcacaagggctaacaataattggtggtggaggagatggtggttgaggagcagcagagggaggagaatattgagaaggt |
43142204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 35958687 - 35958646
Alignment:
| Q |
106 |
atgttgctagctccaaagactctatgagcaatggtgaacttg |
147 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
35958687 |
atgttgctagcaccaaaaactctatgagcaatggtaaacttg |
35958646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 170
Target Start/End: Original strand, 22428009 - 22428092
Alignment:
| Q |
87 |
tacctgcaagaacttaatgatgttgctagctccaaagactctatgagcaatggtgaacttgagtggatcagttggaggaaaata |
170 |
Q |
| |
|
|||||| ||||| || |||||||||||||| ||||| ||||||||||||||||| |||||| || ||||| ||||||||||| |
|
|
| T |
22428009 |
tacctgtaagaatttgatgatgttgctagcaccaaaaactctatgagcaatggtaaacttggcagggtcagtaggaggaaaata |
22428092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 28057599 - 28057640
Alignment:
| Q |
106 |
atgttgctagctccaaagactctatgagcaatggtgaacttg |
147 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
28057599 |
atgttgctagcaccaaaaactctatgagcaatggtaaacttg |
28057640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University