View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_26 (Length: 297)
Name: NF16840_low_26
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 7595447 - 7595708
Alignment:
| Q |
16 |
atgtattggacttctagaatcaagacaacattggacttcatgtaggtaatggaagtacatttgcagtacttaggtacatcatattactaacatattgcca |
115 |
Q |
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| T |
7595447 |
atgtattggacttctagaattaagacaacattggacttcatgtaggtaatggaagtacatt-gcagtacttaggtacatcatattactaacatattgcca |
7595545 |
T |
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| Q |
116 |
actcctcttctcattgaagatagtgcaactaactagaaagagcagataagttttgatacatcatattattctattctatgacaatctttaacgaacttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7595546 |
actcctcttctcattgaagatagtgcaactaactagaaagagcaaataagttttgatacatcatat-----tattctatgacaatctttaacgaacttca |
7595640 |
T |
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| Q |
216 |
tcccttgttatttctcaaactcaatgtctttgttcagattatggtggaaaatttcttcaatccatttt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7595641 |
tcccttgttatttctcaaactcaatgtctttgttcagattatggtggaaaatttcttcaatccatttt |
7595708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 22424445 - 22424390
Alignment:
| Q |
227 |
ttctcaaactcaatgtctttgttcagattatggtggaaaatttcttcaatccattt |
282 |
Q |
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||||||||||||||| ||||||||| ||| | |||||||||||||| || |||||| |
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| T |
22424445 |
ttctcaaactcaatggctttgttcatatttttgtggaaaatttcttgaagccattt |
22424390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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