View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_28 (Length: 291)
Name: NF16840_low_28
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_28 |
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| [»] scaffold0137 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 21 - 279
Target Start/End: Original strand, 9279756 - 9280009
Alignment:
| Q |
21 |
gcactgctccatttatacgtgctagtgttgtatccagtatcgtcaatgttgtcaattgcagattgtggaaaacagcggttcgctcaaattcctcgacact |
120 |
Q |
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| T |
9279756 |
gcactgctccatttatacgtgctagtgttgtatccagtatcgtcaatgttgtcaattgcagattgtggaaaacagcggttcgctcaaattcctcgacact |
9279855 |
T |
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| Q |
121 |
ttgtagtttgtactaaatagtgtatcgcggaacaatcgcaattagacctgattcttctacgctatggcgctgtagtgctgctatagcccctatttgacaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9279856 |
ttgtagtttgtactaaatagtgtatcgcggaacaatcgcaattagacctgattcttctacgctatggcgctgtagtgctgctatagcccctatttgacaa |
9279955 |
T |
|
| Q |
221 |
cactgagtatcgttatctcaagttttttctccctcttgatgtatcattaatgtgatttt |
279 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9279956 |
cactgagtatcg-----tcaagttttttctccctcttgatgtatcattaatgtgatttt |
9280009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Complemental strand, 21754284 - 21754255
Alignment:
| Q |
127 |
tttgtactaaatagtgtatcgcggaacaat |
156 |
Q |
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| T |
21754284 |
tttgtactaaatagtgtatcgcggaacaat |
21754255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 35849467 - 35849515
Alignment:
| Q |
64 |
caatgttgtcaattgcagattgtggaaaacagcggttcgctcaaattcc |
112 |
Q |
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| T |
35849467 |
caatgttgtcaattgcagattgtggaaaatagcggtttgttcaaattcc |
35849515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 34436951 - 34436991
Alignment:
| Q |
116 |
acactttgtagtttgtactaaatagtgtatcgcggaacaat |
156 |
Q |
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| T |
34436951 |
acactttgtagtttgtactaaatagtgtattgctgaacaat |
34436991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 7210567 - 7210610
Alignment:
| Q |
67 |
tgttgtcaattgcagattgtggaaaacagcggttcgctcaaatt |
110 |
Q |
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| T |
7210567 |
tgttgtcaattgcagattgtggaaaatagtggtttgctcaaatt |
7210610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 36031 - 36064
Alignment:
| Q |
67 |
tgttgtcaattgcagattgtggaaaacagcggtt |
100 |
Q |
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| T |
36031 |
tgttgtcaattgcagattgtggaaaatagcggtt |
36064 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 156
Target Start/End: Original strand, 1109364 - 1109393
Alignment:
| Q |
127 |
tttgtactaaatagtgtatcgcggaacaat |
156 |
Q |
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| T |
1109364 |
tttgtactaaatagtgtatcgcggaacaat |
1109393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 154
Target Start/End: Original strand, 43209401 - 43209437
Alignment:
| Q |
118 |
actttgtagtttgtactaaatagtgtatcgcggaaca |
154 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |
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| T |
43209401 |
acttcgtagtttgtactacatagtgtatcgcggaaca |
43209437 |
T |
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