View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_38 (Length: 253)
Name: NF16840_low_38
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 27477600 - 27477839
Alignment:
| Q |
1 |
tttggtatgtcacattttgtcattttaacga-cagtgagttaacacggatgaattgaattcaggccacttttgattataaaggaccaaattgcaaaattt |
99 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27477600 |
tttggtatgtcacattttgtcattttaacaaacagtgagttaacacggatgaattgaattcaggccacttttgattataaaggaccaaattgcaaaattt |
27477699 |
T |
|
| Q |
100 |
cacccacaagggactaaatggaaagcgaggccaaaacaggagtttcgcctaatttttattagctagcttttgttgagtgagatttagccgtggtaagaat |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27477700 |
cacccacaagggactaaatggaaagcgaggccaaaacaggaatttcgcctaatttctattagctagcttttgttgagtgagatttagccgtggtaagaat |
27477799 |
T |
|
| Q |
200 |
ttccatttattaaagggtcatattataattgtactatttt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
27477800 |
ttccatttattaaagggtcatattataattgtactatttt |
27477839 |
T |
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