View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16840_low_40 (Length: 249)
Name: NF16840_low_40
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_40 |
 | |
|
| [»] scaffold0224 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 205
Target Start/End: Original strand, 42715447 - 42715642
Alignment:
| Q |
10 |
attatacttggacacaaacagagtgcaaaagataaattagacaaagatccatttaaattaatgtgctgaataattatgaagcaagatatcaaaatcaaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715447 |
attatacttggacacaaacagagtgcaaaagataaattagacaaagatccatttaaattaatgtgctgaataattatgaagcaagatatcaaaatcaaat |
42715546 |
T |
|
| Q |
110 |
tagataaaactgtgagtggtgaatttctcacagtttataaaatcattaaactcgaaagcctagttttatataagctaaggacgattcttaaatacc |
205 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42715547 |
tagataaaagtgtgagtggtgaatttctcacagtttataaaatcatcaaactcgaaagcctagttttatataagctaaggacgattcttaaatacc |
42715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 23338 - 23467
Alignment:
| Q |
10 |
attatacttggacacaaacagagtgcaaaagataaattagacaaagatccatttaaattaatgtgctgaataattatgaagcaagatatcaaaatcaaat |
109 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23338 |
attatacttggacgcaaacagagtgcacaagataaattagacaaagatccatttaaacttatgtgctgaataattatgaagcaagatatcaaaatcaaat |
23437 |
T |
|
| Q |
110 |
tagataaaactgtgagtggtgaatttctca |
139 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
23438 |
tagataaaactatgagtggtgaatttctca |
23467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 42836257 - 42836386
Alignment:
| Q |
10 |
attatacttggacacaaacagagtgcaaaagataaattagacaaagatccatttaaattaatgtgctgaataattatgaagcaagatatcaaaatcaaat |
109 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42836257 |
attatacttggacgcaaacagagtgcacaagataaattagacaaagatccatttaaacttatgtgctgaataattatgaagcaagatatcaaaatcaaat |
42836356 |
T |
|
| Q |
110 |
tagataaaactgtgagtggtgaatttctca |
139 |
Q |
| |
|
||||||||||| |||||||||||||||||| |
|
|
| T |
42836357 |
tagataaaactatgagtggtgaatttctca |
42836386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 36931157 - 36931281
Alignment:
| Q |
14 |
tacttggacacaaacagagtgcaaaagataaattagacaaagatccatttaaattaatgtgctgaataattatgaagcaagatatcaaaatcaaattaga |
113 |
Q |
| |
|
||||| || ||||| ||||| |||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||| ||||||||| |
|
|
| T |
36931157 |
tacttagatacaaagagagtacaaaagataaattagacaaagatccatt-aaattaatgtgatggatgattatgaagcaagatatcaaaaacaaattaga |
36931255 |
T |
|
| Q |
114 |
taaaactgtgagtggtgaatttctca |
139 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
36931256 |
taaaactgtgagtgatgaatttctca |
36931281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University