View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_42 (Length: 242)
Name: NF16840_low_42
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_42 |
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| [»] scaffold1583 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 12921890 - 12922110
Alignment:
| Q |
16 |
tcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagatcaaataggat |
115 |
Q |
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| T |
12921890 |
tcatcactcaaaccgctcctcatctcaaaaccttctctcaatcgaaaccaaataagacaaaatcttctcaatcgattggtgttcgtagatcaaacaggat |
12921989 |
T |
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| Q |
116 |
tagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagagatgctgctcca |
215 |
Q |
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| T |
12921990 |
tagggctggaataggaatcagaaaaactcaaagtgtagacactacagtacatgaaattcctgattctgaagatgaagcaaaccacagagaagctgttcca |
12922089 |
T |
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| Q |
216 |
aaataaccttctgatgatgtc |
236 |
Q |
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| T |
12922090 |
acagaaccttctgttgatgtc |
12922110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1583 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 907 - 1142
Alignment:
| Q |
1 |
aagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcg |
100 |
Q |
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| T |
907 |
aagcttctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcaaaaccaaagaagacaaaatcttctcaatcaattggtgttcg |
1006 |
T |
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| Q |
101 |
aagatcaaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccac |
200 |
Q |
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| T |
1007 |
tagatcaaacagaattagggctggaataggaatgagaaaaactcaaagtgtagatactacagtacatgaaattcctgattctgaagatgaaacaaaccac |
1106 |
T |
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| Q |
201 |
agagatgctgctccaaaataaccttctgatgatgtc |
236 |
Q |
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| T |
1107 |
agagaagctgttccaacagaatcttctgttgatgtc |
1142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 14275780 - 14275545
Alignment:
| Q |
1 |
aagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcg |
100 |
Q |
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| T |
14275780 |
aagcttctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcgaaaccaaagaagacaaaatcttctcaatcaattggtgttcg |
14275681 |
T |
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| Q |
101 |
aagatcaaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccac |
200 |
Q |
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| T |
14275680 |
tagatcaaacagaattagagctgaaataggattgagaaaaactcaatgtgtagatactacagtacatgaaattcatgattctgaagatgaaaccaaccac |
14275581 |
T |
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| Q |
201 |
agagatgctgctccaaaataaccttctgatgatgtc |
236 |
Q |
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| T |
14275580 |
agagaagttgttccaacagaaccttctgttgatgtc |
14275545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 14638502 - 14638266
Alignment:
| Q |
1 |
aagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcg |
100 |
Q |
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||||||||||| || | ||||||||||||||||||||||| || || | ||||||| |||||| |||||||||||||||||||||| ||||||| |||| |
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| T |
14638502 |
aagcttctccatcaataatcactcaaaccgctcctcatctaaaagctctttctcaatcgaaacccaagaagacaaaatcttctcaatcgattggtattcg |
14638403 |
T |
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| Q |
101 |
aagatcaaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccac |
200 |
Q |
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| T |
14638402 |
tagatcaaacaggattagggctggaataggaataaggaaaactcaaagtgtagatactacagtacatgaaattcctgattctgaagatgaaactacccac |
14638303 |
T |
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| Q |
201 |
agagatgctgctccaaaataaccttctgatgatgtcc |
237 |
Q |
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| T |
14638302 |
agagaagctgttccaacagaaccttctgttgatgtcc |
14638266 |
T |
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