View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_46 (Length: 237)
Name: NF16840_low_46
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_46 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: scaffold0376 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 3135 - 3342
Alignment:
| Q |
14 |
caaaggtcgcgatcagatatttcaaatttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccagga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3135 |
caaaggtcgcgatcagatatttcaaatttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccagga |
3234 |
T |
|
| Q |
114 |
ttttctggagtggagattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagcca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3235 |
ttttctggagtggagattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagcca |
3334 |
T |
|
| Q |
214 |
ttgatagg |
221 |
Q |
| |
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|||||||| |
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|
| T |
3335 |
ttgatagg |
3342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 38513806 - 38513599
Alignment:
| Q |
14 |
caaaggtcgcgatcagatatttcaaatttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccagga |
113 |
Q |
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||||||||| || ||||||||||| ||||||||||| | |||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38513806 |
caaaggtcgtgaccagatatttcagatttacttgaaagggatcaaacttgaccacgagccttcatattattcacataagcttgcatcccttactccagga |
38513707 |
T |
|
| Q |
114 |
ttttctggagtggagattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagcca |
213 |
Q |
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||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| | ||||||||||||||||| | |
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| T |
38513706 |
tttgctggagcggatattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgaagaagcacacgtcacacatgatcatttcgaggcagcta |
38513607 |
T |
|
| Q |
214 |
ttgatagg |
221 |
Q |
| |
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|||||||| |
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| T |
38513606 |
ttgatagg |
38513599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 29728612 - 29728818
Alignment:
| Q |
14 |
caaaggtcgcgatcagatatttcaaatttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccagga |
113 |
Q |
| |
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||||||||| || ||||||||||| ||||||||||||| ||||||||| | | || |||| |||| |||| | || |||||||||||||||| |||| |
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| T |
29728612 |
caaaggtcgtgaccagatatttcagatttacttgaacaagatcaaactttcccacgaacctttgtatttttcaaaaaggcttgcatcccttactcaagga |
29728711 |
T |
|
| Q |
114 |
ttttctggagtggagattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagcca |
213 |
Q |
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||| |||||| || ||| ||||||||||||||||||||||||| |||||||| |||||||| |||| ||| ||||| | |||||||||||||||||| | |
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| T |
29728712 |
tttactggagcagatatttctaatgtttgcaatgaagctgctctaattgctgcgaggactgaagaagcacaagtcacaatggatcatttcgaggcagcta |
29728811 |
T |
|
| Q |
214 |
ttgatag |
220 |
Q |
| |
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||||||| |
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|
| T |
29728812 |
ttgatag |
29728818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 20478321 - 20478118
Alignment:
| Q |
18 |
ggtcgcgatcagatatttcaaatttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccaggatttt |
117 |
Q |
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||||| || ||||||||||| ||||||||||| || |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
20478321 |
ggtcgtgaccagatatttcagatttacttgaaaaggatcaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccaggatttg |
20478222 |
T |
|
| Q |
118 |
ctggagtggagattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagccattga |
217 |
Q |
| |
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|||||| ||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |||| ||||||||| |||||||||| |||||||| ||||| |
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|
| T |
20478221 |
ctggagcggacattgctaacgtttgcaatgaagctgctctgatagctgcaagaactgaagaagcacatgtcacagaggatcattttgaggcagctattga |
20478122 |
T |
|
| Q |
218 |
tagg |
221 |
Q |
| |
|
|||| |
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|
| T |
20478121 |
tagg |
20478118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 24004210 - 24004416
Alignment:
| Q |
15 |
aaaggtcgcgatcagatatttcaaatttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccaggat |
114 |
Q |
| |
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|||||||| || ||||||||||| ||||| ||||| | ||||||||||||| | ||||||||||||||||| || || |||||| ||||||||||||||| |
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| T |
24004210 |
aaaggtcgtgaccagatatttcagatttatttgaaaaaaatcaaacttgaccacgagccttcatattattctcagaggcttgcagcccttactccaggat |
24004309 |
T |
|
| Q |
115 |
tttctggagtggagattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagccat |
214 |
Q |
| |
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|| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||| || |
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| T |
24004310 |
ttgctggagcagacattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaatcgcaagtcacaatggatcatttcgaggcagctat |
24004409 |
T |
|
| Q |
215 |
tgatagg |
221 |
Q |
| |
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|||||| |
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| T |
24004410 |
cgatagg |
24004416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 39 - 221
Target Start/End: Original strand, 45284928 - 45285110
Alignment:
| Q |
39 |
atttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccaggattttctggagtggagattgctaatg |
138 |
Q |
| |
|
||||||||||| || || ||||||||| | |||||||||||||||||||||| |||||||||||||||||| ||||| ||||| || |||||||||| |
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|
| T |
45284928 |
atttacttgaaaaggattaaacttgaccaggagccttcatattattcacataagcttgcatcccttactccatgatttgctggatcagacattgctaatg |
45285027 |
T |
|
| Q |
139 |
tttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagccattgatagg |
221 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| ||| ||||| ||| ||||||||||| |||||||| ||||||||| |
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|
| T |
45285028 |
tttgcaatgaagctgctctgattgctgcaagtactgaagaaacacatgccacaaaggatcattttgaggcagctattgatagg |
45285110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 16838087 - 16838293
Alignment:
| Q |
14 |
caaaggtcgcgatcagatatttcaaatttacttgaacagaatcaaacttgacaatgagccttcatattattcacatagacttgcatcccttactccagga |
113 |
Q |
| |
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||||||||| || ||||||||||| ||||||||||||| ||||||||| | | || |||| |||| |||| | || |||||||||||||||| |||| |
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| T |
16838087 |
caaaggtcgtgaccagatatttcagatttacttgaacaagatcaaactttcccacgaacctttgtatttttcaaaaaggcttgcatcccttactcaagga |
16838186 |
T |
|
| Q |
114 |
ttttctggagtggagattgctaatgtttgcaatgaagctgctctgattgctgcaaggactgatgaagaacatgtcacgaaggatcatttcgaggcagcca |
213 |
Q |
| |
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||| |||||| ||||||||||||||||| |||||||||||||| |||||||| |||||||| |||| ||| ||||| | |||||||||||||||||| | |
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|
| T |
16838187 |
tttactggagcagagattgctaatgtttgtaatgaagctgctctaattgctgcgaggactgaagaagcacaagtcacaatggatcatttcgaggcagcta |
16838286 |
T |
|
| Q |
214 |
ttgatag |
220 |
Q |
| |
|
||||||| |
|
|
| T |
16838287 |
ttgatag |
16838293 |
T |
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