View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16840_low_47 (Length: 230)

Name: NF16840_low_47
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16840_low_47
NF16840_low_47
[»] chr3 (5 HSPs)
chr3 (6-230)||(47451476-47451700)
chr3 (54-229)||(11015115-11015284)
chr3 (54-216)||(11005552-11005708)
chr3 (60-130)||(11024133-11024203)
chr3 (155-224)||(11024222-11024291)
[»] chr4 (31 HSPs)
chr4 (6-229)||(45365796-45366019)
chr4 (40-228)||(49043778-49043960)
chr4 (52-190)||(7790381-7790519)
chr4 (54-208)||(48870843-48870997)
chr4 (54-208)||(48876147-48876301)
chr4 (54-208)||(48886529-48886683)
chr4 (58-229)||(45384520-45384697)
chr4 (52-192)||(7773447-7773587)
chr4 (54-189)||(48156053-48156188)
chr4 (13-196)||(48899035-48899218)
chr4 (52-190)||(7771696-7771834)
chr4 (50-131)||(49038498-49038579)
chr4 (50-189)||(48147333-48147472)
chr4 (66-228)||(48852950-48853106)
chr4 (6-187)||(7237319-7237500)
chr4 (6-130)||(7908663-7908787)
chr4 (69-192)||(7765941-7766064)
chr4 (52-142)||(7878732-7878822)
chr4 (72-224)||(37826632-37826784)
chr4 (69-192)||(7786763-7786886)
chr4 (60-131)||(48864395-48864466)
chr4 (60-130)||(7813838-7813908)
chr4 (52-137)||(45371696-45371781)
chr4 (51-139)||(49048176-49048264)
chr4 (87-208)||(48903241-48903359)
chr4 (60-130)||(7800998-7801068)
chr4 (160-196)||(50669380-50669416)
chr4 (159-221)||(43596154-43596216)
chr4 (107-189)||(50250403-50250485)
chr4 (159-192)||(7878045-7878078)
chr4 (60-128)||(7823332-7823400)
[»] chr5 (4 HSPs)
chr5 (54-208)||(9120046-9120200)
chr5 (86-219)||(179330-179463)
chr5 (38-142)||(29688478-29688582)
chr5 (63-131)||(42561966-42562034)
[»] chr8 (5 HSPs)
chr8 (59-196)||(15349178-15349315)
chr8 (102-192)||(4962191-4962281)
chr8 (159-192)||(12200641-12200674)
chr8 (159-192)||(12445069-12445102)
chr8 (87-135)||(4031583-4031631)
[»] chr6 (1 HSPs)
chr6 (51-138)||(21016174-21016261)
[»] chr7 (1 HSPs)
chr7 (69-139)||(48884176-48884246)
[»] chr1 (2 HSPs)
chr1 (100-137)||(24310570-24310607)
chr1 (101-137)||(24416132-24416168)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 47451476 - 47451700
Alignment:
Q  6 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 105  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47451476 aatatcaccactttttgtagaggttaaggggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttg 47451575  T
Q  106 tattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggtt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47451576 tattctttcatcacccatatttcaactatatcattatgacaatccagaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggtt 47451675  T
Q  206 catggtcaaaatcatctggcaaatt 230  Q
    |||||||||||||||||||||||||    
T  47451676 catggtcaaaatcatctggcaaatt 47451700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 11015115 - 11015284
Alignment:
Q  54 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 153  Q
    |||| |||||||||| || |||||||| ||  ||||||||||||  ||||||||||||||||| ||||||||||||||| |  |||        |||| |    
T  11015115 aatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgttccat------cctccata 11015208  T
Q  154 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaat 229  Q
     ||| |||||| |||||||||||||||| ||||||| ||||||   ||||||||| ||||||| ||||||| ||||    
T  11015209 gcccatagacttagaaattctccaaatatccacaaatcacaatctataggttcatagtcaaaaccatctggaaaat 11015284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 11005552 - 11005708
Alignment:
Q  54 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 153  Q
    ||||||||||||||| |  ||||||| |||   |||||||||||  ||||||||||||||||| ||||||||||||| | | ||||         ||| |    
T  11005552 aatgccatcaatagataagacaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat------cccccata 11005645  T
Q  154 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaa 216  Q
     ||| ||||||||||||||||||||||| ||||||| ||||||   |||||||||| ||||||    
T  11005646 gcccatagactaagaaattctccaaatatccacaaatcacaatctataggttcatgatcaaaa 11005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 11024133 - 11024203
Alignment:
Q  60 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaa 130  Q
    ||||||||| || |||||||||||   |||||||||||  ||||||||||||||||| |||||||||||||    
T  11024133 atcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 224
Target Start/End: Original strand, 11024222 - 11024291
Alignment:
Q  155 cccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctgg 224  Q
    ||| |||||| |||||||||||||||| ||||||| ||||||   |||||||||| |||||| |||||||    
T  11024222 cccatagactgagaaattctccaaatatccacaaatcacaatccataggttcatgatcaaaaccatctgg 11024291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 45365796 - 45366019
Alignment:
Q  6 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 105  Q
    ||||||||| ||||||||||||  ||| ||| ||||||| |||| ||||||||||||||||| ||||||  ||||||||  ||||||||||   |||||     
T  45365796 aatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcacttta 45365895  T
Q  106 tattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggtt 205  Q
    ||||||||||||||||||||||||||| ||||||||| | |||||| | |||  | ||| | ||||||||||||||||||||||||||||| |  |||||    
T  45365896 tattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatcgtgaggtt 45365995  T
Q  206 catggtcaaaatcatctggcaaat 229  Q
    || ||| ||| |||||||| ||||    
T  45365996 cacggttaaactcatctggaaaat 45366019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 40 - 228
Target Start/End: Original strand, 49043778 - 49043960
Alignment:
Q  40 aagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 139  Q
    |||||||||| ||||||| |||||||||||| ||||||||||||   ||| |||||||  ||||||||||||||||||||||||||||||||||||||||    
T  49043778 aagtaatgagtgggaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcat 49043877  T
Q  140 tatgac-aatccacaacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaa 228  Q
    | || | | ||||       || |||||||| ||| ||||||||||||||| ||||||  ||||||||||| ||||||||| ||||||||    
T  49043878 tctgtctagtcca-------tacactaagaagttcaccaaatacccacaaatcacaatctgtaggttcatgttcaaaatcacctggcaaa 49043960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 7790519 - 7790381
Alignment:
Q  52 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 151  Q
    |||||| |||||||||||||||||||||| ||   |||||||||||  ||||||||||||||||||||||||||||||| | ||||||||| | |||||     
T  7790519 ggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatcct 7790420  T
Q  152 caacccttagactaagaaattctccaaatacccacaaac 190  Q
     | | | || ||| |||||||||||||||||||||||||    
T  7790419 tagcgcataaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 48870997 - 48870843
Alignment:
Q  54 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 153  Q
    |||| |||||| |||||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| |    
T  48870997 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48870898  T
Q  154 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 208  Q
     |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  48870897 gcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 48870843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 48876301 - 48876147
Alignment:
Q  54 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 153  Q
    |||| |||||| |||||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| |    
T  48876301 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48876202  T
Q  154 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 208  Q
     |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  48876201 gcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 48876147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 48886683 - 48886529
Alignment:
Q  54 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 153  Q
    |||| |||||| |||||||||||||||||||  ||||||||| || ||||||||||| ||||||||||| ||||||| | ||| || || | |||||| |    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48886584  T
Q  154 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 208  Q
     |   |||||| |||||||| |||||||||||||||||||| ||| |||| ||||    
T  48886583 gcatatagactgagaaattccccaaatacccacaaaccacagttgttaggatcat 48886529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 229
Target Start/End: Original strand, 45384520 - 45384697
Alignment:
Q  58 ccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaact---atatca---ttatgacaatcca 151  Q
    ||||||| || ||||||| ||||||||  |||||||||||  ||||| |||||||||||||||||||||||||||   |||| |   |||| | ||| ||    
T  45384520 ccatcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactgaaatattaatattatcataatgca 45384619  T
Q  152 caacccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaat 229  Q
     | | |  | ||| ||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||    
T  45384620 tagctcaaaaactgagaaattctccaaatacccacaaaccacaatcggtaggttcacggttaaactcatctggcaaat 45384697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 7773447 - 7773587
Alignment:
Q  52 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 151  Q
    |||||| | |||| ||||||||||||||  ||   |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||  |  ||||     
T  7773447 ggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcct 7773546  T
Q  152 caacccttagactaagaaattctccaaatacccacaaacca 192  Q
     | ||| || ||||||| |||||||||||||||||||||||    
T  7773547 tagcccatacactaagatattctccaaatacccacaaacca 7773587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 48156053 - 48156188
Alignment:
Q  54 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 153  Q
    |||||||||||||| ||| |||||||| ||   |||||| ||||  ||||||||||| ||||||||||||||||||||| | ||||||   ||||| |||    
T  48156053 aatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaaca 48156152  T
Q  154 acccttagactaagaaattctccaaatacccacaaa 189  Q
     ||| || ||| ||||||||||||||||||||||||    
T  48156153 gcccataaactgagaaattctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 48899218 - 48899035
Alignment:
Q  13 ccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctt 112  Q
    |||||||||||| ||   || |||||||||||   || ||||||||||||||||| |||||||||||||  |  |||||| || || ||||| |||||||    
T  48899218 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctt 48899119  T
Q  113 tcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaaccacaat 196  Q
    |||||||||||||||||||| ||||||||  | |||   || ||| || ||| | ||| |||||||| ||||||||||||||||    
T  48899118 tcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaat 48899035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 7771834 - 7771696
Alignment:
Q  52 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatcca 151  Q
    |||||| |||||| ||||||||||||||| ||   ||| |||||||  ||||||||||||||||||||||||||| ||| | ||||||||| | |||||     
T  7771834 ggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatcct 7771735  T
Q  152 caacccttagactaagaaattctccaaatacccacaaac 190  Q
     | | | || ||| |||||||||||||||||||||||||    
T  7771734 tagcgcataaactgagaaattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 49038498 - 49038579
Alignment:
Q  50 agggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 131  Q
    |||||||||||  |||||| ||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||||    
T  49038498 agggaatgccactaatagacagaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 48147333 - 48147472
Alignment:
Q  50 agggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatc 149  Q
    ||||||||||||||||||| | |  |||||||||   |||||||||||  ||||||||||||||||||||||||||||||||| |   ||| | |  |||    
T  48147333 agggaatgccatcaatagacaaattaagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactctgctattgtcatgatc 48147432  T
Q  150 cacaacccttagactaagaaattctccaaatacccacaaa 189  Q
    || | || ||||||| ||||||| ||||||||||||||||    
T  48147433 catacccgttagactgagaaattgtccaaatacccacaaa 48147472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 228
Target Start/End: Complemental strand, 48853106 - 48852950
Alignment:
Q  66 agaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagacta 165  Q
    ||||||||||||||||||   ||||||||||   ||||||||||||||||| ||||||||||||||| ||||||         |||  |||| || |||     
T  48853106 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat------cccccatgacccatatactt 48853013  T
Q  166 agaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctggcaaa 228  Q
    |||||||||| ||||||||||||| | |||| |||||||||||||| ||||||||| ||||||    
T  48853012 agaaattctctaaatacccacaaatcgcaataggtaggttcatggtaaaaatcatccggcaaa 48852950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 7237319 - 7237500
Alignment:
Q  6 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 105  Q
    |||||||||| |||||||||||  ||  |||| |||||| |||   ||||||| || || || ||| |||||||| ||   |||| ||||||  | ||||    
T  7237319 aatatcaccattttttgtagagtgtatagggtgaaagtagtgaccaggaatgcgatgaagaggaagcacaagagttttagtccaaaacgaatgcattttg 7237418  T
Q  106 tattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccaca 187  Q
    ||||||||||||||||||||| ||| | ||||||||| | |||||  | ||| |||||| ||||||||||||||||||||||    
T  7237419 tattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 130
Target Start/End: Complemental strand, 7908787 - 7908663
Alignment:
Q  6 aatatcaccactttttgtagaggttaaggggtaaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttg 105  Q
    |||||||||  |||||||||||  ||  |||| |||||| |||   |||||| |||||| ||||||||||||||| || | |||||| ||||  ||||||    
T  7908787 aatatcaccgttttttgtagagtgtatagggtgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcactttg 7908688  T
Q  106 tattctttcatcacccatatttcaa 130  Q
    |||||||||||||||||||||||||    
T  7908687 tattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 7766064 - 7765941
Alignment:
Q  69 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaaga 168  Q
    ||||||||| |||||   ||| |||||||  ||||||||||||||||||||||||||||||| | ||||||||  |  ||||  ||||| || ||| |||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7765965  T
Q  169 aattctccaaatacccacaaacca 192  Q
    ||||||||| ||||||||||||||    
T  7765964 aattctccagatacccacaaacca 7765941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 7878822 - 7878732
Alignment:
Q  52 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattat 142  Q
    |||||| ||||||  |||||||||||||| ||   |||||| ||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  7878822 ggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattat 7878732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 37826632 - 37826784
Alignment:
Q  72 aacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaat 171  Q
    ||||||||||||   |||||||||||  | |||||||||||||||||||| || || || | ||| ||||| ||   |||   ||| |||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  172 tctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatctgg 224  Q
    ||||||||||||||||||||| |||  | ||| |||| || ||||||||||||    
T  37826732 tctccaaatacccacaaaccaaaatatggaggatcatcgtgaaaatcatctgg 37826784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 69 - 192
Target Start/End: Complemental strand, 7786886 - 7786763
Alignment:
Q  69 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaaga 168  Q
    ||||||||||||||| | ||||||  |||  || |||||||||||||||||||||||||||| | ||||||||  |  ||||  ||||| || ||| |||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7786787  T
Q  169 aattctccaaatacccacaaacca 192  Q
    ||||| ||| ||||||||||||||    
T  7786786 aattccccagatacccacaaacca 7786763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  60 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 131  Q
    |||||||| |||||||||| ||||   |||||||||||  ||||||||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 7813908 - 7813838
Alignment:
Q  60 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaa 130  Q
    ||||| ||||||||||||||| || | |||||||||||  |||||||||||||||| ||||||||||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 45371696 - 45371781
Alignment:
Q  52 ggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatc 137  Q
    |||| |||||| |||| |||||||| ||||||   |||||||||||  ||||||||||||||||| ||||||||||||||| ||||    
T  45371696 ggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 49048176 - 49048264
Alignment:
Q  51 gggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 139  Q
    ||||||| ||||| |||||| ||||| ||||||   ||| |||||||  ||||| || |||||||||||||||||||||||||||||||    
T  49048176 gggaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcat 49048264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 48903359 - 48903241
Alignment:
Q  87 ccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccac 186  Q
    ||||||| |||  ||||||||||||||||||||||||||||||| |   | |||||   |||||| | ||| ||| |||||||||||||||||||||||     
T  48903359 ccaagacaaatgcactttgtattctttcatcacccatatttcaaat---ttattatcgtaatccaaagcccataggctaagaaattctccaaatacccat 48903263  T
Q  187 aaaccacaattggtaggttcat 208  Q
    ||| |||| || |||| |||||    
T  48903262 aaatcacactttgtagattcat 48903241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 130
Target Start/End: Complemental strand, 7801068 - 7800998
Alignment:
Q  60 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaa 130  Q
    ||||| ||||||||||||||| || | |||||||||||  |||||||| ||||||| ||||||||||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 50669416 - 50669380
Alignment:
Q  160 agactaagaaattctccaaatacccacaaaccacaat 196  Q
    ||||| |||||||||||||||||||||||||||||||    
T  50669416 agactgagaaattctccaaatacccacaaaccacaat 50669380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 43596154 - 43596216
Alignment:
Q  159 tagactaagaaattctccaaatacccacaaaccacaattggtaggttcatggtcaaaatcatc 221  Q
    ||||||||||||||| ||||||||||||| | |||||||  |||| |||| ||||||| ||||    
T  43596154 tagactaagaaattccccaaatacccacatatcacaatttttaggatcatagtcaaaaccatc 43596216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Original strand, 50250403 - 50250485
Alignment:
Q  107 attctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaa 189  Q
    |||||||||||||||||||||||  | || |||| ||| ||||  || ||  |||||| |||| |||||||||||||||||||    
T  50250403 attctttcatcacccatatttcagttgtaccattctgaaaatcaccacccaatagactgagaatttctccaaatacccacaaa 50250485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 7878078 - 7878045
Alignment:
Q  159 tagactaagaaattctccaaatacccacaaacca 192  Q
    |||||| |||||||||||||||||||||||||||    
T  7878078 tagactgagaaattctccaaatacccacaaacca 7878045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 7823400 - 7823332
Alignment:
Q  60 atcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttc 128  Q
    ||||| ||||||||||||||| || | ||||||| |||  |||||||| ||||| | ||||||||||||    
T  7823400 atcaacagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 54 - 208
Target Start/End: Complemental strand, 9120200 - 9120046
Alignment:
Q  54 aatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccaca 153  Q
    |||||| |||||||| | ||||||||| || | |||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||  | |||||| |    
T  9120200 aatgccgtcaatagacaaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccata 9120101  T
Q  154 acccttagactaagaaattctccaaatacccacaaaccacaattggtaggttcat 208  Q
     ||| || ||| |||||||||||||||||||||| | ||||||| |||| |||||    
T  9120100 gcccatatactgagaaattctccaaatacccacacatcacaatttgtagcttcat 9120046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 219
Target Start/End: Complemental strand, 179463 - 179330
Alignment:
Q  86 cccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaataccca 185  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||| ||||||||| | |||||| | ||| || ||| ||||||| ||||||||||||    
T  179463 cccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaataccca 179364  T
Q  186 caaaccacaattggtaggttcatggtcaaaatca 219  Q
     | | ||||||| |||| ||||| ||||| ||||    
T  179363 tacatcacaatttgtagcttcatagtcaatatca 179330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 142
Target Start/End: Complemental strand, 29688582 - 29688478
Alignment:
Q  38 aaaagtaatgagagggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatc 137  Q
    ||||||| |||  ||||||| || ||| ||||||||| |||||||||  ||||||||| |  || ||||||| |||||||||||||||||||||| || |    
T  29688582 aaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaactgtacc 29688483  T
Q  138 attat 142  Q
    |||||    
T  29688482 attat 29688478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 42561966 - 42562034
Alignment:
Q  63 aatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaac 131  Q
    ||||| |||||||||| ||||   |||||| ||||  |||||||||||||||||||||||||| |||||    
T  42561966 aataggaagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 59 - 196
Target Start/End: Complemental strand, 15349315 - 15349178
Alignment:
Q  59 catcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccacaaccct 158  Q
    ||||||||  |||||||||| |||||  |||||| || || |||||||||||||||||||||||||||||||   |||||||| || |||||  |  ||     
T  15349315 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagacca 15349216  T
Q  159 tagactaagaaattctccaaatacccacaaaccacaat 196  Q
     ||||||| |||||| ||||| ||||||||||||||||    
T  15349215 aagactaaaaaattcgccaaagacccacaaaccacaat 15349178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 4962191 - 4962281
Alignment:
Q  102 tttgtattctttcatcacccatatttcaactatatcattatgacaatccacaacccttagactaagaaattctccaaatacccacaaacca 192  Q
    ||||||||||||||||||||||||||||||| ||  |||  || ||||||   ||| |||||| |||||||||||||||||||||||||||    
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaacca 4962281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 12200674 - 12200641
Alignment:
Q  159 tagactaagaaattctccaaatacccacaaacca 192  Q
    ||||||||||||||||||||||||||||||||||    
T  12200674 tagactaagaaattctccaaatacccacaaacca 12200641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 192
Target Start/End: Complemental strand, 12445102 - 12445069
Alignment:
Q  159 tagactaagaaattctccaaatacccacaaacca 192  Q
    ||||||||||||||||||||||||||||||||||    
T  12445102 tagactaagaaattctccaaatacccacaaacca 12445069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 4031583 - 4031631
Alignment:
Q  87 ccaagacgaattaactttgtattctttcatcacccatatttcaactata 135  Q
    |||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  4031583 ccaagacgaatgcattttgtattctttcataacccatatttcaactata 4031631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 21016261 - 21016174
Alignment:
Q  51 gggaatgccatcaatagaaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatca 138  Q
    ||||||| |||||||||| | |  |||||||||   |||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  21016261 gggaatgtcatcaatagagaaagtaagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatca 21016174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  69 aagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcat 139  Q
    |||||||||||||||   |||||||  ||  ||||||||||||||||||||| ||||||||||| ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 24310607 - 24310570
Alignment:
Q  100 actttgtattctttcatcacccatatttcaactatatc 137  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  24310607 actttgtattctttcatcacccatatatcaactttatc 24310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 24416168 - 24416132
Alignment:
Q  101 ctttgtattctttcatcacccatatttcaactatatc 137  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  24416168 ctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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