View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_54 (Length: 213)
Name: NF16840_low_54
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 5325351 - 5325525
Alignment:
| Q |
20 |
caaagcaatgatatgattnnnnnnnntgtaaaggtacctttttctgtataatgaaaaacttcttgacaatggaagttagaaaaggtatttatttaacgga |
119 |
Q |
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| T |
5325351 |
caaagcaatgatatgattaaaaaaaatgtaaaggtacctttttctgtataatgaaaaacttcttgacaatggaagttagaaaaggtatttatttaacgga |
5325450 |
T |
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| Q |
120 |
agttagaatatttgacggaaaatcttaaattggattaaattgaaccagtttttattgaataagggaggggataga |
194 |
Q |
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| T |
5325451 |
agttagaatatttgacggaaaatcttaaattggattaaattgaaccagtttttattgaataagggaggggataga |
5325525 |
T |
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Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 31091526 - 31091604
Alignment:
| Q |
106 |
atttatttaacggaagttagaatatttgacggaaaatcttaaattggattaaattgaaccagtttttattgaataaggg |
184 |
Q |
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| T |
31091526 |
atttgtttaacggcagttagaaaatttgacggaaaatcttaaattggattaaattgaattagtttttattgaataaggg |
31091604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 106 - 189
Target Start/End: Original strand, 10354181 - 10354264
Alignment:
| Q |
106 |
atttatttaacggaagttagaatatttgacggaaaatcttaaattggattaaattgaaccagtttttattgaataagggagggg |
189 |
Q |
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| T |
10354181 |
atttatttaacggaagttagaaaatttgacggaaaatcttaaattggattaaattgaactagtttttattgaataagggagggg |
10354264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 36020554 - 36020637
Alignment:
| Q |
107 |
tttatttaacggaagttagaatatttgacggaaaatcttaaattggattaaattgaaccagtttttattgaataagggagggga |
190 |
Q |
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| T |
36020554 |
tttatttaacggcagttagaaaattttatggaaaattttaaattggattaaattgaactagtttttattgaataagggagggga |
36020637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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