View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16840_low_7 (Length: 541)

Name: NF16840_low_7
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16840_low_7
NF16840_low_7
[»] chr4 (10 HSPs)
chr4 (1-531)||(36508702-36509220)
chr4 (473-528)||(37339259-37339314)
chr4 (106-197)||(35157929-35158020)
chr4 (131-197)||(24613634-24613700)
chr4 (121-197)||(23292930-23293006)
chr4 (395-462)||(37339930-37339997)
chr4 (106-184)||(40179593-40179671)
chr4 (106-196)||(49431050-49431140)
chr4 (130-179)||(30982829-30982878)
chr4 (130-186)||(22234834-22234890)
[»] chr7 (3 HSPs)
chr7 (119-186)||(5835284-5835351)
chr7 (106-197)||(598232-598323)
chr7 (119-202)||(21880189-21880272)
[»] chr5 (10 HSPs)
chr5 (106-197)||(28588618-28588709)
chr5 (106-202)||(42893384-42893480)
chr5 (119-182)||(26312806-26312869)
chr5 (106-197)||(43564905-43564996)
chr5 (106-156)||(18421826-18421876)
chr5 (106-197)||(21576689-21576780)
chr5 (119-201)||(30098978-30099060)
chr5 (106-202)||(4105283-4105379)
chr5 (117-169)||(23012380-23012432)
chr5 (106-158)||(42029776-42029828)
[»] chr3 (6 HSPs)
chr3 (106-197)||(35222962-35223053)
chr3 (106-197)||(40993279-40993370)
chr3 (119-159)||(2941595-2941635)
chr3 (106-197)||(55401099-55401190)
chr3 (106-182)||(3631708-3631784)
chr3 (119-159)||(13845507-13845547)
[»] chr1 (10 HSPs)
chr1 (106-197)||(40258877-40258968)
chr1 (106-186)||(29163336-29163416)
chr1 (106-196)||(5898211-5898301)
chr1 (106-196)||(26830612-26830701)
chr1 (106-203)||(38078599-38078696)
chr1 (129-197)||(32461397-32461465)
chr1 (119-197)||(37598868-37598946)
chr1 (125-193)||(2896069-2896137)
chr1 (106-186)||(12918969-12919049)
chr1 (106-182)||(40181895-40181971)
[»] chr6 (7 HSPs)
chr6 (106-159)||(33001271-33001324)
chr6 (106-202)||(34595158-34595254)
chr6 (106-203)||(7378003-7378100)
chr6 (117-158)||(30851635-30851676)
chr6 (106-177)||(9658903-9658974)
chr6 (119-172)||(7740678-7740731)
chr6 (106-182)||(28152122-28152198)
[»] chr2 (5 HSPs)
chr2 (106-181)||(20242687-20242762)
chr2 (106-204)||(37559001-37559099)
chr2 (108-197)||(18840957-18841046)
chr2 (106-185)||(30404806-30404885)
chr2 (119-197)||(28596506-28596584)
[»] scaffold0050 (1 HSPs)
scaffold0050 (119-181)||(70315-70377)
[»] chr8 (8 HSPs)
chr8 (116-182)||(126306-126372)
chr8 (119-197)||(3951480-3951558)
chr8 (106-182)||(14134723-14134799)
chr8 (119-171)||(33405354-33405406)
chr8 (119-197)||(926732-926810)
chr8 (131-197)||(29447043-29447109)
chr8 (106-179)||(31557020-31557093)
chr8 (119-159)||(43737793-43737833)
[»] scaffold0008 (1 HSPs)
scaffold0008 (130-182)||(263320-263372)
[»] scaffold0003 (1 HSPs)
scaffold0003 (142-202)||(241665-241725)


Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 531
Target Start/End: Complemental strand, 36509220 - 36508702
Alignment:
Q  1 attctaaatcttcagtagttctaatcttatgtgtatcatgctatgaagcatggataccggagacactgacatgtcgataccgcaaataatttgaagnnnn 100  Q
    |||||||||||||||||| |||| ||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||||||||||         
T  36509220 attctaaatcttcagtagatctagtcttatgtgtat---------aagcacggataccggagacactgacatgtcgataccgcaaataatttgaa---aa 36509133  T
Q  101 nnnnntcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgta 200  Q
         |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||| |||||||| ||    
T  36509132 aaaaatcacataatcaagtgtaattatatgtgtcggcgtcggacgcgacacgtgtctgataccaggacacgtttaatccgagaagtattcatgcttcata 36509033  T
Q  201 gaactatcatgttatcttctacttaattaattgtgattaatttggttgttaattaattacagtgggtaagactcttgaatgctttcttgcaagaagcaaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36509032 gaactatcatgttatcttctacttaattaattgtgattaatttggttgttaattaattacagtgggtaagactcttgaatgctttcttgcaagaagcaaa 36508933  T
Q  301 atggtttgcttctgggaatgttccaaagtcagaggagtatttgaagaatgccatagtaagcactggggtacacgtgatacttgtgcatgctttcttttcc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36508932 atggtttgcttctgggaatgttccaaagtcagaggagtatttgaagaatgccatagtaagcactggggtacacgtgatacttgtgcatgctttcttttgc 36508833  T
Q  401 atgggtcaaggtataactgagaaaaccgtgtctctaatggatgacttcccaaccattatatctacaacagccaaaattctaaggctatgtgatgacttgg 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36508832 atgggtcaaggtataactgagaaaaccgtgtctctaatggatgacttcccaaccattatatctacaacagccaaaattctaaggctatgtgatgacttgg 36508733  T
Q  501 aaggcgacaaggtaggaaaacatcacctatg 531  Q
    ||||||| |||||||||||||||||||||||    
T  36508732 aaggcgataaggtaggaaaacatcacctatg 36508702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 473 - 528
Target Start/End: Complemental strand, 37339314 - 37339259
Alignment:
Q  473 aaaattctaaggctatgtgatgacttggaaggcgacaaggtaggaaaacatcacct 528  Q
    |||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||    
T  37339314 aaaattctaaggttatgtgatgacttggaaagcgacaaggtaagaaaacattacct 37339259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 35158020 - 35157929
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  | |||||||||| ||||||| ||| |||||||||| ||||  | ||| | |||||||||||||||||||| ||| ||||||    
T  35158020 tcacataatttagtgtaattataagtgtcggtgtctgacacgacacatgtccaacaccggaacacgcttaatccgagaagtgtccgtgcttc 35157929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 24613700 - 24613634
Alignment:
Q  131 tgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||| |||||||||||||||||||||| |||||||||||  |||||| || ||| ||| ||||||    
T  24613700 tgtcggtgtcagacacgacacgtgtctgacaccaggacacgtctaatcctaggagtgtccgtgcttc 24613634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 23293006 - 23292930
Alignment:
Q  121 taattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||| | ||||||| ||| ||||||||||||||| || ||| |||||||| ||||||||| ||| ||| ||||||    
T  23293006 taattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttc 23292930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 37339997 - 37339930
Alignment:
Q  395 ttttccatgggtcaaggtataactgagaaaaccgtgtctctaatggatgacttcccaaccattatatc 462  Q
    |||| ||||||| ||| ||||| ||| ||||||| ||||||||||||  ||||||| |||||||||||    
T  37339997 ttttacatgggtaaagatataattgaaaaaaccgagtctctaatggacaacttccctaccattatatc 37339930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 40179671 - 40179593
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaa 184  Q
    |||||||||  | |||||||||||| ||||| ||| |||||||||| |||  || |||| ||||||| |||||||||||    
T  40179671 tcacataattcagtgtaattatatgcgtcggtgtcggacacgacacatgttcgacaccatgacacgcctaatccgagaa 40179593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 49431050 - 49431140
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgctt 196  Q
    |||||||||  | |||||||| | ||||||| ||| |||||||||||||||  | ||| |||||||| | ||||||| ||| |||||||||    
T  49431050 tcacataattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacacgccttatccgaggagtgtccatgctt 49431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 30982878 - 30982829
Alignment:
Q  130 gtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatcc 179  Q
    ||||||| ||||||||||||||||||| || ||| |||||||| ||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatcc 30982829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 22234890 - 22234834
Alignment:
Q  130 gtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagt 186  Q
    ||||||| ||| ||||||||||||||| || ||||||||||   |||||||||||||    
T  22234890 gtgtcggtgtctgacacgacacgtgtccgacaccaggacacagctaatccgagaagt 22234834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 5835284 - 5835351
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagt 186  Q
    |||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||    
T  5835284 tgtaattatatgtgtcggtgtcagacatgacatgtgtctgataccgggacacgcttaatccgagaagt 5835351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 598232 - 598323
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||| |||| |||||||||| || ||||||| ||||||||||||||||||| || ||| |||||||| ||||||||||||| ||| ||||||    
T  598232 tcacgtaattaaatgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttc 598323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 202
Target Start/End: Original strand, 21880189 - 21880272
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtaga 202  Q
    |||||||| | ||||||| ||| |||||||||| |||| || |||||||||||| ||||||||||||| ||| |||||| ||||    
T  21880189 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 28588709 - 28588618
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  | |||||||||| ||||||| ||| |||||||||| | ||||| |||||||||||||||||||||  ||| ||||||||||    
T  28588709 tcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacacgcttaatccgaagagtgtccatgcttc 28588618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 42893384 - 42893480
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtaga 202  Q
    |||||||||| | |||||||| | ||||||| ||||||||| ||||||||| || |||||||||||| ||||  ||| ||| |||||||||| ||||    
T  42893384 tcacataatccagtgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacacgcctaatatgaggagtgtccatgcttcataga 42893480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 26312806 - 26312869
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgag 182  Q
    ||||||||||||| |||| ||| ||||||| |||||||||| |||||||||| | |||||||||    
T  26312806 tgtaattatatgtatcggtgtcggacacgatacgtgtctgacaccaggacacacctaatccgag 26312869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 43564905 - 43564996
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  | |||||||||| ||||||| ||| ||||||||| ||||| ||  || |||||||| ||||||||||||| ||| ||||||    
T  43564905 tcacataatttagtgtaattataagtgtcggtgtcggacacgacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttc 43564996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Complemental strand, 18421876 - 18421826
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtc 156  Q
    |||||||||| | |||||||||||||||||||||| |||||||||| ||||    
T  18421876 tcacataatccagtgtaattatatgtgtcggcgtcggacacgacacatgtc 18421826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 21576780 - 21576689
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  | |||||||| | ||||||  ||| |||||||||||||||||| ||  |||||||| ||||||||| ||| ||| ||||||    
T  21576780 tcacataattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttc 21576689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 30099060 - 30098978
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtag 201  Q
    |||||||||||||||||| ||| || ||||||||||||||| ||  |||||||| | |||| || ||| | | ||||||||||    
T  30099060 tgtaattatatgtgtcggtgtcggatacgacacgtgtctgacacggggacacgccttatccaaggagtgttcgtgcttcgtag 30098978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 4105283 - 4105379
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtaga 202  Q
    |||||||||  | |||||||| | |||| ||  |||||| ||| | |||||||||||  |||||||| ||||||||| ||| ||| |||||||||||    
T  4105283 tcacataattcagtgtaattacaagtgtaggtatcagactcgatatgtgtctgatactgggacacgcctaatccgaggagtgtccgtgcttcgtaga 4105379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 23012432 - 23012380
Alignment:
Q  117 aatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggaca 169  Q
    |||||||||||||||||||| ||  |||||||||| ||||||| ||| |||||    
T  23012432 aatgtaattatatgtgtcggtgttggacacgacacatgtctgacaccgggaca 23012380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 42029776 - 42029828
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctg 158  Q
    |||||||||  ||||||||||||||| |||| ||| |||||||||| ||||||    
T  42029776 tcacataattcaatgtaattatatgtatcggtgtcggacacgacacatgtctg 42029828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 35222962 - 35223053
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  |||||||||||||||||||| ||| |||| ||||||||||||| ||  |||||||||| ||||||| ||| ||| ||||||    
T  35222962 tcacataattcaatgtaattatatgtgtcggtgtcggacatgacacgtgtctgacacggggacacgctttatccgaggagtgtccgtgcttc 35223053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 40993370 - 40993279
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  | |||||||||||||||||| ||| |||||||||| |||| || ||| |||||||| ||||||||| ||| ||||||||||    
T  40993370 tcacataattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttc 40993279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 2941595 - 2941635
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctga 159  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  2941595 tgtaattatatgtgtcggtgtcggacacgacacgtgtctga 2941635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 55401099 - 55401190
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  | |||||||| | ||||||| ||| ||||||||||||||| || |||  ||||||| ||||||||| ||| ||| ||||||    
T  55401099 tcacataatttagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttc 55401190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 3631708 - 3631784
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgag 182  Q
    |||||||||  | |||||||||||||| | | ||| |||||||||| |||| || |||||||||||| || ||||||    
T  3631708 tcacataattcagtgtaattatatgtgccagtgtcggacacgacacatgtccgacaccaggacacgcctagtccgag 3631784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 13845547 - 13845507
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctga 159  Q
    |||||||||||||||||| ||| ||||||| ||||||||||    
T  13845547 tgtaattatatgtgtcggtgtcggacacgagacgtgtctga 13845507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 40258968 - 40258877
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||  | |||||||| | ||||||| |||||||||||||| |||| || |||||||||||| ||||||||| ||| ||||||||||    
T  40258968 tcacataattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacacgcctaatccgaggagtgtccatgcttc 40258877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 29163416 - 29163336
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagt 186  Q
    |||||||||  ||| |||||||||||||||| ||| ||||||||||||| |||| ||| |||||||  ||||| |||||||    
T  29163416 tcacataattcaatttaattatatgtgtcggtgtcggacacgacacgtgcctgacaccgggacacggctaatcagagaagt 29163336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 5898301 - 5898211
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgctt 196  Q
    |||||||||  | |||||||||||| ||||| |||||||||||||||||||  | ||| |||||||  ||||||||| ||| ||| |||||    
T  5898301 tcacataattcagtgtaattatatgcgtcggtgtcagacacgacacgtgtccaacaccgggacacgtctaatccgaggagtgtccgtgctt 5898211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 26830612 - 26830701
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgctt 196  Q
    ||||||||| ||||||||||||| ||||| | ||||||||| ||||||||  |||||| |||||||| ||||| ||| ||| ||| |||||    
T  26830612 tcacataattaaatgtaattataagtgtc-gtgtcagacactacacgtgttcgataccgggacacgcctaatcagaggagtgtccgtgctt 26830701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Complemental strand, 38078696 - 38078599
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtagaa 203  Q
    |||||||||  |||||||||| | ||||||| ||| |||||||||| |||   | |||||||||||| ||||||||| ||||| | |||||| |||||    
T  38078696 tcacataattcaatgtaattacaagtgtcggtgtcggacacgacacatgttcaacaccaggacacgcctaatccgaggagtattcgtgcttcatagaa 38078599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 32461465 - 32461397
Alignment:
Q  129 tgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||| ||| |||||||||||||||||| ||  |||||||| |||||| |||||| ||| ||||||    
T  32461465 tgtgtcggtgtcggacacgacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttc 32461397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 37598868 - 37598946
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||| ||||||| ||| ||||||||||||||| || |   |||||||| ||||||||| ||| ||| ||||||    
T  37598868 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttc 37598946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 2896137 - 2896069
Alignment:
Q  125 tatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatg 193  Q
    ||||| |||||| ||||||||||||| ||||| || ||| |||||| | |||||| |||||| ||||||    
T  2896137 tatatatgtcggtgtcagacacgacatgtgtccgagaccgggacacacctaatccaagaagtgtccatg 2896069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 12918969 - 12919049
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagt 186  Q
    |||||||||  ||||| ||||||||||| ||  || |||||||||||||||||| ||  |||||||  | |||||||||||    
T  12918969 tcacataattcaatgtgattatatgtgttggtatcggacacgacacgtgtctgacacggggacacggcttatccgagaagt 12919049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 40181895 - 40181971
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgag 182  Q
    |||||||||  | ||||||||||||| |||| ||| ||||| |||||||||  | ||| |||||||| |||||||||    
T  40181895 tcacataattcagtgtaattatatgtatcggtgtcggacacaacacgtgtcctacaccgggacacgcctaatccgag 40181971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 33001324 - 33001271
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctga 159  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||    
T  33001324 tcacataattaaatgtaattatatgtgtcggtgtcggacacgacacgtgtctga 33001271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 34595158 - 34595254
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtaga 202  Q
    |||||||||  | |||||||| | ||||||| ||| |||||||||||||||||| ||| |||||| | ||||||||| ||| ||| |||||| ||||    
T  34595158 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcataga 34595254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 7378003 - 7378100
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtagaa 203  Q
    |||||||||  |||||||||||||||||||| ||| ||||||||| |  || || ||| |||||||  ||||| ||||||| ||| |||||| |||||    
T  7378003 tcacataattcaatgtaattatatgtgtcggtgtcggacacgacatgcatccgacaccgggacacggctaatctgagaagtgtccgtgcttcatagaa 7378100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 30851635 - 30851676
Alignment:
Q  117 aatgtaattatatgtgtcggcgtcagacacgacacgtgtctg 158  Q
    |||||||||||||||||||| ||| |||||||||||||||||    
T  30851635 aatgtaattatatgtgtcggtgtcggacacgacacgtgtctg 30851676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 9658903 - 9658974
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaat 177  Q
    |||||||||  | ||||||||||| |||||| || ||||||||||||||||||| ||| | |||||| ||||    
T  9658903 tcacataattcagtgtaattatatttgtcggtgttagacacgacacgtgtctgacaccggaacacgcctaat 9658974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 7740678 - 7740731
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgc 172  Q
    |||||||||||||||| | ||| ||||||||||||  | |||||||||||||||    
T  7740678 tgtaattatatgtgtcagtgtcggacacgacacgtacccgataccaggacacgc 7740731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 28152122 - 28152198
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgag 182  Q
    |||||||||  | |||||||| | ||||||| ||| ||||||||||||||| || ||| ||||| || |||||||||    
T  28152122 tcacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacaggcctaatccgag 28152198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 20242762 - 20242687
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccga 181  Q
    |||||||||  | |||||||||||||||||| ||| ||||| |||||||||||| || ||||||||| | ||||||    
T  20242762 tcacataattcagtgtaattatatgtgtcggtgtcggacacaacacgtgtctgacacgaggacacgccttatccga 20242687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 37559001 - 37559099
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtagaac 204  Q
    |||||||||  |||||||||| | ||||||| ||| |||  |||||||||| || ||| | |||||||||||||||| ||| ||| |||||| ||||||    
T  37559001 tcacataattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcatagaac 37559099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 18841046 - 18840957
Alignment:
Q  108 acataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    ||||||| || |||||||| | ||||||| |||||||||||||| |||| || ||| |||||| | ||||||||| ||| ||| ||||||    
T  18841046 acataattaagtgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacacacctaatccgaggagtgtccgtgcttc 18840957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 185
Target Start/End: Complemental strand, 30404885 - 30404806
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaag 185  Q
    |||||||||  | |||||||| | ||||||||||| |||||||||| |||| || ||||||||| || ||||| ||||||    
T  30404885 tcacataattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggacatgcctaatctgagaag 30404806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 28596506 - 28596584
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||| ||||||| ||| ||||||||||||||| || ||  |||||| | ||||||||| ||| ||| ||||||    
T  28596506 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcctaatccgaggagtgtccgtgcttc 28596584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 70315 - 70377
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccga 181  Q
    |||||||||| ||||||| ||| ||||||||||||||| || ||||||||| || ||||||||    
T  70315 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggacatgcctaatccga 70377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 126372 - 126306
Alignment:
Q  116 aaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgag 182  Q
    ||||||||||||||||||| | ||| |||||||||||||||  ||||| |||||||  |||||||||    
T  126372 aaatgtaattatatgtgtcagtgtcggacacgacacgtgtccaataccgggacacggctaatccgag 126306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 3951558 - 3951480
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||  | |||||| |||||| || ||| ||| ||||||    
T  3951558 tgtacttatatgtgtcggtgtcagacacgacacgtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttc 3951480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 14134723 - 14134799
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgag 182  Q
    |||||||||  | ||||||||||| |||||| |||| |||||||||||||| |  |||||||||||| |||| ||||    
T  14134723 tcacataattcagtgtaattatatatgtcggtgtcaaacacgacacgtgtccgtcaccaggacacgcctaattcgag 14134799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 119 - 171
Target Start/End: Complemental strand, 33405406 - 33405354
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacg 171  Q
    |||||||||||||||||| ||| |||||||||| ||||||| ||| |||||||    
T  33405406 tgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacacg 33405354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 197
Target Start/End: Complemental strand, 926810 - 926732
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||||||| ||||||| ||| ||| ||||||||||| || ||| ||||| |||| ||||||| ||| ||| ||||||    
T  926810 tgtaattataagtgtcggtgtcggacgcgacacgtgtccgacaccgggacatgctttatccgaggagtgtccgtgcttc 926732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 29447109 - 29447043
Alignment:
Q  131 tgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttc 197  Q
    |||||| ||| ||||||||| |||||||| |||||||||||| |||||| || ||| ||| ||||||    
T  29447109 tgtcggtgtcggacacgacatgtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttc 29447043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 31557020 - 31557093
Alignment:
Q  106 tcacataatcaaatgtaattatatgtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatcc 179  Q
    |||||||||  | |||||||| | || |||| |||||||||||||| |||| || |||||||||||| ||||||    
T  31557020 tcacataattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacacgcctaatcc 31557093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 43737833 - 43737793
Alignment:
Q  119 tgtaattatatgtgtcggcgtcagacacgacacgtgtctga 159  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  43737833 tgtaattatatgtgtcggtgtcggacacgacaggtgtctga 43737793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 263372 - 263320
Alignment:
Q  130 gtgtcggcgtcagacacgacacgtgtctgataccaggacacgcttaatccgag 182  Q
    ||||||| ||||||||||||||||||  ||||||| ||||||| |||||||||    
T  263372 gtgtcggtgtcagacacgacacgtgttcgataccaagacacgcctaatccgag 263320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 241665 - 241725
Alignment:
Q  142 gacacgacacgtgtctgataccaggacacgcttaatccgagaagtatccatgcttcgtaga 202  Q
    ||||||||||||||| || ||| |||||||| ||||||||||||| ||| |||||| ||||    
T  241665 gacacgacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcataga 241725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University