View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16840_low_8 (Length: 520)
Name: NF16840_low_8
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Complemental strand, 41129635 - 41129139
Alignment:
| Q |
19 |
gtactagctatgttcttgacaatggttatgggaatttggcattacgttcacaaagaaagatacatgtttgaactcaaaaacaaagtctctaccgagtatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129635 |
gtactagctatgttcttgacaatggttatgggaatttggcattacgttcacaaagaaagatacatgtttgaactcaaaaacaaagtctctaccgagtatt |
41129536 |
T |
|
| Q |
119 |
tgagggaattgtcaaacagaacagatgtacacagagtgcccggaattggacttttgtattccgagcttgtacaaggaattcctccaatatttccgcactt |
218 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129535 |
tgagggaattggcaaacagaacagatgtacacagagtgcctggaattggacttttgtattccgagcttgtacaaggaattcctccaatatttccgcactt |
41129436 |
T |
|
| Q |
219 |
tatagctagcgtaccatccattcattcagttgttgtgttcgtttctatcaagacaattccggttaatagagttgctttggaagagaggtttttgtttcgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129435 |
tatagctagcgtaccatccattcattcagttgttgtgttcgtttctatcaagacaattccggttaatagagttgctttggaagagaggtttttgtttcgg |
41129336 |
T |
|
| Q |
319 |
caagtggaaccaagagagtatagaatatttcgatgtgttgcaagacgcggttacaatgatgtgcttgggaatcctgcggagtttgagtcacaattaatac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129335 |
caagtggaaccaagagagtatagaatatttcgatgtgttgcaagacgcggttacaatgatgtgcttgggaatcctgcggagtttgagtcacaattaatac |
41129236 |
T |
|
| Q |
419 |
aaaatctcaaggaatttattcaacaacaggattttatgcttgaggttaatgagggtgctgctacaactacaacaagtgaacaattagtattatctac |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
41129235 |
aaaatctcaaggaatttattcaacaacaggattttatgcttgaggttaatgagggtgctgctacaactacaacaagtgaacaattagtagtatctac |
41129139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 155 - 438
Target Start/End: Original strand, 7801674 - 7801957
Alignment:
| Q |
155 |
tgcccggaattggacttttgtattccgagcttgtacaaggaattcctccaatatttccgcactttatagctagcgtaccatccattcattcagttgttgt |
254 |
Q |
| |
|
|||| ||||||||| ||||||||| ||||| ||||||||||||||||||||||| | ||||| || || | | ||||| | ||||||||||||||||| |
|
|
| T |
7801674 |
tgcctggaattggagttttgtattgtgagctagtacaaggaattcctccaatattccttcacttcattgccaacataccaactattcattcagttgttgt |
7801773 |
T |
|
| Q |
255 |
gttcgtttctatcaagacaattccggttaatagagttgctttggaagagaggtttttgtttcggcaagtggaaccaagagagtatagaatatttcgatgt |
354 |
Q |
| |
|
|| ||||| || ||| ||||||| ||| ||| ||||| |||||||||| |||| | |||| || ||||| |||||||| | | ||||||||| || |
|
|
| T |
7801774 |
atttgtttccattaaggcaattccaattactagtgttgcattggaagagaagtttctatttcaacatgtggagccaagagaatggaaaatatttcgttgc |
7801873 |
T |
|
| Q |
355 |
gttgcaagacgcggttacaatgatgtgcttgggaatcctgcggagtttgagtcacaattaatacaaaatctcaaggaatttatt |
438 |
Q |
| |
|
||| ||| | |||||||| ||||| |||| || || |||||||||||| ||||| | ||| |||| |||||||||||| |
|
|
| T |
7801874 |
attgtaaggcatggttacaacgatgtaattggagattctatggagtttgagtctcaattggtgcaacatctaaaggaatttatt |
7801957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 7801589 - 7801639
Alignment:
| Q |
70 |
aaagaaagatacatgtttgaactcaaaaacaaagtctctaccgagtatttg |
120 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||||||| ||||||||||| |
|
|
| T |
7801589 |
aaagaaaggtacatgtttgaactcaagaataaagtctcttccgagtatttg |
7801639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 326 - 358
Target Start/End: Original strand, 36526960 - 36526992
Alignment:
| Q |
326 |
aaccaagagagtatagaatatttcgatgtgttg |
358 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
36526960 |
aaccaaaagagtatagaatatttcgatgtgttg |
36526992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University