View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16840_low_9 (Length: 504)
Name: NF16840_low_9
Description: NF16840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16840_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Complemental strand, 35742620 - 35742145
Alignment:
| Q |
18 |
cgaagtgcaccaacgcatgcagattaaaaccgatttagatgctttggaacgaaccaaagatgatgagtctaagaagtttaagagtcacaacattgaattc |
117 |
Q |
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| T |
35742620 |
cgaagtgcaacaacgcatgcagattaaaaccgatttagatgctttggaacgaaccaaagatgatgagtctaagaagtttaagagtcacaacattgaattc |
35742521 |
T |
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| Q |
118 |
gacttccatattttgataaagatcaaggaagcaatggtggatgtttcctccaattgcatggagttagtacttaaggtatcacagttagttagaacaaatt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742520 |
aacttccatattttgataaagatcaaggaagcaatggtggatgtttcctccaattgcatggagttagtacttaaggtatcacagttagttagaacaaatt |
35742421 |
T |
|
| Q |
218 |
aaaactacaaatctactttcgattttcgaccatttttactattaataaaacacagttagactaactacattgtatcgcgtgttaatctcagaagctagta |
317 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35742420 |
aaaactacaaaactactttcgattttcgaccatttttactattaataaaacacagttagactaactacattgtatcgcgtgttaatctcagaagctagta |
35742321 |
T |
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| Q |
318 |
acttgatttgtgttattaatcttaatcttaatgtaggagaagcgggaagatagcaagattgatggaccaaaaaaggaatgtgcagaaatgctatggaggg |
417 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
35742320 |
acttgatttgcgttattaatcttaatcttaatgtaggagaagcgggaagatagcaagattgatggaccaaaaaaggaatgtgcaaaaatgctatggaggg |
35742221 |
T |
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| Q |
418 |
cgttccaatttacatttcgtgtctacacatttgctggtggacttgacgatcgtgccgacacgttaacaagagaatt |
493 |
Q |
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| T |
35742220 |
cgttccaatttacatttcgtgtctacacatttgctggtggacttgacgatcgtgccgacacgttaacaagagaatt |
35742145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 477
Target Start/End: Complemental strand, 11916573 - 11916502
Alignment:
| Q |
406 |
tgctatggagggcgttccaatttacatttcgtgtctacacatttgctggtggacttgacgatcgtgccgaca |
477 |
Q |
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| T |
11916573 |
tgctttggagggctttccaatttgcatttagggtttatacatttgctggtggacatgatgatcgtgctgaca |
11916502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 3424532 - 3424689
Alignment:
| Q |
37 |
cagattaaaaccgatttagatgctttggaacgaaccaaagatgatgagtctaagaagtttaagagtcacaacattgaattcgacttccatattttgataa |
136 |
Q |
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||||| ||||| || |||||||||||||| ||||| |||||||| || | ||||| |||||| | || ||||| |||||||||||| | || | | | |
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| T |
3424532 |
cagatcaaaacagaattagatgctttggagcgaacgaaagatgaagaattgaagaaatttaagggccataacatcgaattcgacttctacatccttgtca |
3424631 |
T |
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| Q |
137 |
agatcaaggaagcaatggtggatgtttcctccaattgcatggagttagtacttaaggt |
194 |
Q |
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| T |
3424632 |
aaattaaagaagcaatggtggatgtttcttcaaattgcatggagttagcactaaaggt |
3424689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 493
Target Start/End: Original strand, 3424848 - 3424935
Alignment:
| Q |
406 |
tgctatggagggcgttccaatttacatttcgtgtctacacatttgctggtggacttgacgatcgtgccgacacgttaacaagagaatt |
493 |
Q |
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|||| |||||||| ||||||||| ||||| | || || |||||||||||||||| ||| |||||||| |||| | ||||||||||| |
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| T |
3424848 |
tgctttggagggctttccaatttgcatttagagtttatacatttgctggtggacatgatgatcgtgctgacaaactcacaagagaatt |
3424935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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