View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16841_high_12 (Length: 277)
Name: NF16841_high_12
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16841_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 54339368 - 54339639
Alignment:
| Q |
10 |
attattcttaggctannnnnnnctgaccaattttatatgctgaggctttataatca----tattacatgcgagtagcgacacccacaaatatatgatatg |
105 |
Q |
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| T |
54339368 |
attattcttaggctatttttttctgaccaattttatatgctaaggctttataatcaatcatattacatgcgagtagcgacacccacaaatatatgatatg |
54339467 |
T |
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| Q |
106 |
attctagttgattcgtctggtgtaccaatttactggnnnnnnnggcagattgcctatatcaggggagttggagaggtacattcacataaaattccaaaat |
205 |
Q |
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| T |
54339468 |
attctagttgattcggctggtgtaccaatttactggaaaaaaaggcagattgcctatatcaggggagttggagaggtacattcacataaaattccaaaat |
54339567 |
T |
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| Q |
206 |
gcatatgaaagtgatcatcataatcataattcataattcataagctataagcaaaggagttgtgttgcgtcc |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54339568 |
gcatatgaaagtgatcatcataatcataattcataattcataagctataagcaaaggagttgtgttgcgtcc |
54339639 |
T |
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