View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16841_high_15 (Length: 256)

Name: NF16841_high_15
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16841_high_15
NF16841_high_15
[»] chr4 (12 HSPs)
chr4 (1-239)||(54849655-54849894)
chr4 (14-102)||(21391053-21391141)
chr4 (110-213)||(54857852-54857953)
chr4 (1-102)||(6112635-6112736)
chr4 (14-103)||(51038767-51038856)
chr4 (1-102)||(3672279-3672380)
chr4 (1-102)||(28093181-28093282)
chr4 (16-102)||(46192364-46192450)
chr4 (16-102)||(49243820-49243906)
chr4 (16-102)||(45829357-45829443)
chr4 (16-102)||(7217770-7217856)
chr4 (16-102)||(44275711-44275797)
[»] chr3 (21 HSPs)
chr3 (1-102)||(22894685-22894786)
chr3 (1-102)||(51339868-51339967)
chr3 (1-102)||(34749983-34750084)
chr3 (1-102)||(36749411-36749512)
chr3 (14-102)||(21559566-21559654)
chr3 (14-102)||(29460665-29460753)
chr3 (14-102)||(29471517-29471605)
chr3 (14-102)||(38231298-38231386)
chr3 (1-102)||(43999994-44000095)
chr3 (19-102)||(30735598-30735681)
chr3 (1-102)||(36370423-36370524)
chr3 (1-50)||(48200742-48200791)
chr3 (12-100)||(29820395-29820483)
chr3 (1-102)||(46112029-46112130)
chr3 (3-55)||(50966182-50966234)
chr3 (3-55)||(51069317-51069369)
chr3 (24-99)||(20856259-20856334)
chr3 (14-101)||(39072371-39072458)
chr3 (14-101)||(39467199-39467286)
chr3 (1-78)||(53638164-53638241)
chr3 (17-101)||(5417684-5417768)
[»] chr8 (12 HSPs)
chr8 (5-103)||(31536-31634)
chr8 (14-102)||(30432344-30432432)
chr8 (14-102)||(10203669-10203757)
chr8 (14-102)||(36189221-36189309)
chr8 (8-87)||(42668873-42668952)
chr8 (1-102)||(42162603-42162704)
chr8 (16-102)||(12665349-12665435)
chr8 (1-102)||(31318810-31318911)
chr8 (1-102)||(44081785-44081886)
chr8 (12-103)||(3690698-3690789)
chr8 (14-101)||(33726017-33726104)
chr8 (11-56)||(38845117-38845162)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-102)||(6723-6824)
[»] chr7 (19 HSPs)
chr7 (1-102)||(7699968-7700069)
chr7 (1-102)||(7700166-7700267)
chr7 (1-102)||(7700364-7700465)
chr7 (1-102)||(7700562-7700663)
chr7 (1-102)||(21807407-21807508)
chr7 (14-102)||(36346662-36346750)
chr7 (1-102)||(26972288-26972389)
chr7 (14-102)||(34828071-34828158)
chr7 (11-103)||(38321013-38321105)
chr7 (14-101)||(5811261-5811348)
chr7 (14-101)||(23980137-23980224)
chr7 (14-101)||(31148296-31148383)
chr7 (19-102)||(42221066-42221149)
chr7 (1-102)||(28307580-28307681)
chr7 (1-102)||(45782745-45782846)
chr7 (14-101)||(13108154-13108241)
chr7 (1-102)||(30887705-30887806)
chr7 (17-101)||(15020288-15020370)
chr7 (1-102)||(34108431-34108532)
[»] chr5 (11 HSPs)
chr5 (1-102)||(39370932-39371033)
chr5 (14-102)||(33404534-33404622)
chr5 (14-102)||(40888040-40888128)
chr5 (14-101)||(13347134-13347221)
chr5 (1-101)||(2237282-2237382)
chr5 (1-96)||(14831555-14831650)
chr5 (1-102)||(9408124-9408225)
chr5 (14-102)||(17225324-17225410)
chr5 (14-102)||(1815714-1815802)
chr5 (14-102)||(19124570-19124656)
chr5 (17-102)||(27553474-27553559)
[»] chr6 (4 HSPs)
chr6 (14-102)||(3987003-3987091)
chr6 (14-101)||(14022940-14023027)
chr6 (16-102)||(3118147-3118233)
chr6 (14-102)||(15345757-15345843)
[»] chr2 (8 HSPs)
chr2 (14-102)||(33732574-33732662)
chr2 (16-102)||(36315566-36315652)
chr2 (16-102)||(44958118-44958204)
chr2 (16-102)||(16089827-16089913)
chr2 (14-102)||(3830995-3831081)
chr2 (16-101)||(37914336-37914421)
chr2 (14-78)||(37498963-37499027)
chr2 (15-102)||(14573000-14573087)
[»] chr1 (4 HSPs)
chr1 (14-102)||(2509029-2509117)
chr1 (5-102)||(39249952-39250049)
chr1 (1-102)||(34307223-34307324)
chr1 (32-103)||(10146970-10147041)
[»] scaffold0043 (1 HSPs)
scaffold0043 (14-102)||(87262-87349)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 54849894 - 54849655
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| || ||  |||| ||||||| |||| ||||||||||||||||||||||||    
T  54849894 tcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgtacgctatctaaggtggttcatgtata 54849795  T
Q  101 aggttcacaaatcacaattaattagaaaggaaacttatattcacaatg-aattatattgacaagaatacatatccggatattattatcctaataatgaat 199  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  54849794 aggttcacaaatcacaatcaattagaaaggaaacttatattcacaatgaaattatattgacaagaatacatatcctgatattattatcctaataatgaat 54849695  T
Q  200 taagattcaaaaccggtatataaactcttgtactcacgac 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  54849694 taagattcaaaaccggtatataaactcttgtactcacgac 54849655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 21391053 - 21391141
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |||||| ||||  ||||||| |||||||||||||||||||||||    
T  21391053 tcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataag 21391141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 54857953 - 54857852
Alignment:
Q  110 aatcacaattaattagaaaggaaacttatattcacaatgaattatattgacaagaatacatatccggatattattatcctaataatgaattaagattcaa 209  Q
    ||||||||  |||||||||||||||||||||||||||| |||||||||||||  ||| ||||| | ||||||||||| |||| ||||||||| |||||||    
T  54857953 aatcacaaacaattagaaaggaaacttatattcacaatcaattatattgaca--aatgcatattctgatattattatgctaacaatgaattatgattcaa 54857856  T
Q  210 aacc 213  Q
    ||||    
T  54857855 aacc 54857852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6112736 - 6112635
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||||||| | ||||||||||||||||| |||||||||| |||||||| | |||  |||||| |||   ||||||| |||||||||||||||||||||    
T  6112736 tcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtata 6112637  T
Q  101 ag 102  Q
    ||    
T  6112636 ag 6112635  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 51038856 - 51038767
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataagg 103  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||  |||||||||||| ||||||| | |||||||||| ||| |||||||    
T  51038856 tcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtatgccacctaaggtggtccatatataagg 51038767  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 3672380 - 3672279
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  || ||| ||||  ||||||| | |||||||||||||||||||    
T  3672380 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtata 3672281  T
Q  101 ag 102  Q
    ||    
T  3672280 ag 3672279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28093181 - 28093282
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | |||||||| |||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||    
T  28093181 tcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 28093280  T
Q  101 ag 102  Q
    ||    
T  28093281 ag 28093282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 46192450 - 46192364
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||| ||||||||||||    
T  46192450 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtgattcatgtataag 46192364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 49243906 - 49243820
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||| |||||||||| |||||||| |||||  || ||| ||||  ||||||| | |||||||||||||||||||||    
T  49243906 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggttcatgtataag 49243820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 45829357 - 45829443
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||| |||||||||| |||||||| |||||  |||||| |||   ||||||  | |||| ||||||||||||||||    
T  45829357 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgtcacctaaagtggttcatgtataag 45829443  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 7217856 - 7217770
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||| ||| ||| |||||||||| |||||||| |||||   ||||| ||||  ||||||| | ||||||||||| |||||||||    
T  7217856 atctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtatgccacctaaggtggtttatgtataag 7217770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 44275797 - 44275711
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||||||||||||| ||| |||||||| |||||  | |||| |||   | ||||| | ||||||||||| |||||||||    
T  44275797 atctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataag 44275711  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 22894786 - 22894685
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||||||| | ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||    
T  22894786 tcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 22894687  T
Q  101 ag 102  Q
    ||    
T  22894686 ag 22894685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 51339868 - 51339967
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  |||||| |||| |||||||| | ||||||||||| |||||||    
T  51339868 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgt--gggtgtaaaaggatgtatgccacctaaggtggtttatgtata 51339965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34749983 - 34750084
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| | |||  |||||| ||||  ||||||| | |||||||||||||||||||    
T  34749983 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 34750082  T
Q  101 ag 102  Q
    ||    
T  34750083 ag 34750084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 36749512 - 36749411
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  |||||| |||   ||||||  |||||||||||||||||||||    
T  36749512 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacatctaaggtggttcatgtata 36749413  T
Q  101 ag 102  Q
    ||    
T  36749412 ag 36749411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 21559654 - 21559566
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||||||||||||||||||| |||||||| |||||  |||||| ||||  ||||||| | ||||| ||||| |||||||||    
T  21559654 tcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggtttatgtataag 21559566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 29460753 - 29460665
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| ||||||||  ||||  |||||| ||||  ||||||| | |||||||||||||||||||||    
T  29460753 tcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 29460665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 29471605 - 29471517
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| ||||||||  ||||  |||||| ||||  ||||||| | |||||||||||||||||||||    
T  29471605 tcatctcttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 29471517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 38231386 - 38231298
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||| |||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||||    
T  38231386 tcatatcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 38231298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44000095 - 43999994
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  |||||| |||   ||||||  | |||||||||||||||||||    
T  44000095 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtata 43999996  T
Q  101 ag 102  Q
    ||    
T  43999995 ag 43999994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 30735598 - 30735681
Alignment:
Q  19 tcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||| |||||||||| |||||||  |||||  |||||| ||||  ||||||| |||||||||||||||| ||||||    
T  30735598 tcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatatataag 30735681  T

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Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 36370423 - 36370524
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||| ||| |||||||| |||||  |||||| |||   ||||||  | |||||||||||||||||||    
T  36370423 tcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaaggtgtatgacacctaaggtggttcatgtata 36370522  T
Q  101 ag 102  Q
    ||    
T  36370523 ag 36370524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 48200791 - 48200742
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaa 50  Q
    |||||||||| | |||||||||||||||||||||||||||| ||||||||    
T  48200791 tcatcatcctttttcatctcttctttcaatatttttgccacgtgtcacaa 48200742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 29820395 - 29820483
Alignment:
Q  12 tctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    ||||||||||||||| ||| ||||||| || | |||||||||| |  |||||||||||| ||||||| | ||||||||||  |||||||    
T  29820395 tctcatctcttcttttaatgtttttgctacatctcacaattgtatgtgggtgtcaaagtgtgtatgccacctaaggtggtctatgtata 29820483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 46112029 - 46112130
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  || ||| |||   ||||||  | ||||| |||||||||||||    
T  46112029 tcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatggtgtatgtcacctaagatggttcatgtata 46112128  T
Q  101 ag 102  Q
    ||    
T  46112129 ag 46112130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 50966234 - 50966182
Alignment:
Q  3 atcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtg 55  Q
    |||||||| | |||||||||||||||||||||||| ||| |||||||| ||||    
T  50966234 atcatcctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtg 50966182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 51069369 - 51069317
Alignment:
Q  3 atcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtg 55  Q
    |||||||| | |||||||||||||||||||||||| ||| |||||||| ||||    
T  51069369 atcatcctttttcatctcttctttcaatatttttgtcacgtgtcacaaatgtg 51069317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 20856259 - 20856334
Alignment:
Q  24 tttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtat 99  Q
    ||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||| |||||||||||||    
T  20856259 tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 39072371 - 39072458
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||| ||| ||| |||||| |||||||| ||| |  |||||| ||||  ||||||  |||||||||| |||||||||||    
T  39072371 tcatctcttcttttaatgtttatgccacatgtcacaaatgtatgtgggtgtaaaagggtgtatgtcatctaaggtgattcatgtataa 39072458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 39467199 - 39467286
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    |||||||||||||||||||||||| ||| |||||||| | |||  |||||| ||||  ||||||  ||||| ||||||| ||| ||||    
T  39467199 tcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcatctatggtggtttatggataa 39467286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 53638241 - 53638164
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgc 78  Q
    |||||| || ||||||||||||||||| || ||||| |||| |||||| |||||||  |||||| ||||  |||||||    
T  53638241 tcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtatgc 53638164  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 5417684 - 5417768
Alignment:
Q  17 tctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    |||||||||| |||||||||||||| ||| | |||||| |  | |||||||||| ||||||| | |||| ||||| ||| |||||    
T  5417684 tctcttcttttaatatttttgccacatgttataattgtatgtgagtgtcaaagtgtgtatgccacctaaagtggtccatatataa 5417768  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 31536 - 31634
Alignment:
Q  5 catcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataagg 103  Q
    |||||||| | ||||||||||||||| |||||||||| |||||||||||| |  |||||||||||| ||||||||| ||||| |||| ||| |||||||    
T  31536 catcctctattatctcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataagg 31634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 30432432 - 30432344
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||| | ||||  ||||||| |||||||||||||||||||||||    
T  30432432 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtatgccatctaaggtggttcatgtataag 30432344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 10203757 - 10203669
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||||||||||||||| ||| |||||||| |||||  || ||| |||| |||||||  | |||||||||||||||||||||    
T  10203757 tcatctcttctttcaatatttttgtcacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgtcacctaaggtggttcatgtataag 10203669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 36189309 - 36189221
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||||||||||||||||||| |||||||| ||| |  |||||| ||||  ||||||| | ||||| |||||||||||||||    
T  36189309 tcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 36189221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 42668873 - 42668952
Alignment:
Q  8 cctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaagg 87  Q
    |||||||||| |||||||| ||| |||||||||| ||||||||||||||  |||||||||||| ||||||| | ||||||    
T  42668873 cctctctcatatcttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaagg 42668952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 42162704 - 42162603
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||| ||| |||||||| |||||  |||||| ||||  ||||||  | |||||||||||||||||||    
T  42162704 tcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagggtgtatgacacctaaggtggttcatgtata 42162605  T
Q  101 ag 102  Q
    ||    
T  42162604 ag 42162603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 12665435 - 12665349
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||| |||||||||| ||| |||| |||||  | |||| ||||  ||||||| | |||||||||||||||||||||    
T  12665435 atctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatgtataag 12665349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 31318911 - 31318810
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  || ||| |||   | ||||| | |||||||||||||||||||    
T  31318911 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaagttatatgccacctaaggtggttcatgtata 31318812  T
Q  101 ag 102  Q
    ||    
T  31318811 ag 31318810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 44081886 - 44081785
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| ||||| |||| ||| |||| |||||  |||||| ||||  ||||||| | ||||| |||||||||||||    
T  44081886 tcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtata 44081787  T
Q  101 ag 102  Q
    ||    
T  44081786 ag 44081785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 3690698 - 3690789
Alignment:
Q  12 tctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataagg 103  Q
    ||||||||||||||| |||||||| || || |||||||| |||||  || | |||||| |||||||  | ||||| || |||||||||||||    
T  3690698 tctcatctcttcttttaatattttcgctacatgtcacaagtgtgtgtggatatcaaaggatgtatgtcacctaagatgattcatgtataagg 3690789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 33726104 - 33726017
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||||||| |||||||||| |||||||| ||| |  |||||| |||   ||||||| | |||| |||||| ||||||||    
T  33726104 tcatctcttctttcaatgtttttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataa 33726017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 38845117 - 38845162
Alignment:
Q  11 ctctcatctcttctttcaatatttttgccacttgtcacaattgtgt 56  Q
    |||| |||| |||||||||||||||| |||| ||||||||||||||    
T  38845117 ctcttatcttttctttcaatattttttccacatgtcacaattgtgt 38845162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 6824 - 6723
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||    
T  6824 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 6725  T
Q  101 ag 102  Q
    ||    
T  6724 ag 6723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7699968 - 7700069
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||||||| | | ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| ||||||||||||| |||||||    
T  7699968 tcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtata 7700067  T
Q  101 ag 102  Q
    ||    
T  7700068 ag 7700069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7700166 - 7700267
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||||||| | | ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| ||||||||||||| |||||||    
T  7700166 tcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtata 7700265  T
Q  101 ag 102  Q
    ||    
T  7700266 ag 7700267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7700364 - 7700465
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||||||| | | ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| ||||||||||||| |||||||    
T  7700364 tcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtata 7700463  T
Q  101 ag 102  Q
    ||    
T  7700464 ag 7700465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7700562 - 7700663
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||||||| | | ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| ||||||||||||| |||||||    
T  7700562 tcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggtttatgtata 7700661  T
Q  101 ag 102  Q
    ||    
T  7700662 ag 7700663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 21807407 - 21807508
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||||||  | |||||||||||||||||||||||||||| | |||||| | |||  |||||| |||   ||||||| |||||||||||||||||||||    
T  21807407 tcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaatggtgtatgccatctaaggtggttcatgtata 21807506  T
Q  101 ag 102  Q
    ||    
T  21807507 ag 21807508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 36346662 - 36346750
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||| |||||| ||||  ||||||| | ||||| ||||| |||||||||    
T  36346662 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaagggtgtatgccacctaagatggtttatgtataag 36346750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 26972288 - 26972389
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | |||||||| |||||||| |||||||||| ||||| || |||||  |||||| ||||  ||||||| | |||||||||||||||||||    
T  26972288 tcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtata 26972387  T
Q  101 ag 102  Q
    ||    
T  26972388 ag 26972389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 34828158 - 34828071
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  || ||| |||| |||||||| | | |||||||||||||||||||    
T  34828158 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaggatgtatgc-acccaaggtggttcatgtataag 34828071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 38321105 - 38321013
Alignment:
Q  11 ctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataagg 103  Q
    ||||||| |||||||||||| |||||||||| |||||||||||| |  |||||| ||| | ||||||| | ||||| ||||| ||||||||||    
T  38321105 ctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatgccacctaagatggttaatgtataagg 38321013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 5811261 - 5811348
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||  |||| |||||||| | ||| ||||||| ||||||||    
T  5811261 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataa 5811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 23980224 - 23980137
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | ||| ||||||| ||||||||    
T  23980224 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctatggtggtttatgtataa 23980137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 31148383 - 31148296
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||||||| |||||||||  |||||||| |||||  |||||| ||||  ||||||| | ||||| ||||||||||||||    
T  31148383 tcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 42221066 - 42221149
Alignment:
Q  19 tcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||| |||||||||| |||||||| |||||  |||||| |||   ||||||| | |||||||||||||||||||||    
T  42221066 tcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataag 42221149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 28307580 - 28307681
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||| ||| |||||  |||||| ||||  ||||||| | ||||||| ||| |||||||    
T  28307580 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtagtttatgtata 28307679  T
Q  101 ag 102  Q
    ||    
T  28307680 ag 28307681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 45782745 - 45782846
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||| ||| |||||||| |||||  |||||| |||  |||||||| | |||| |||||| |||||||    
T  45782745 tcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaatgatgtatgccacctaaagtggttgatgtata 45782844  T
Q  101 ag 102  Q
    ||    
T  45782845 ag 45782846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 13108241 - 13108154
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||||||  |||||||||| |||||||| |||||  |||||| ||||  |||||||   ||||||||||| ||||||||    
T  13108241 tcatctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataa 13108154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 30887806 - 30887705
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | |||||||||| |||||| ||||||| || |||||||| ||| |  |||||| ||||| ||||||| | ||||| | |||||||||||    
T  30887806 tcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtatgccacctaagattgttcatgtata 30887707  T
Q  101 ag 102  Q
    ||    
T  30887706 ag 30887705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 15020370 - 15020288
Alignment:
Q  17 tctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    |||||||||||||| |||||||||  |||||||| |||||  |||||| ||||  ||||||| | ||| ||||||| ||||||||    
T  15020370 tctcttctttcaatgtttttgccatatgtcacaaatgtgt--gggtgtaaaaggttgtatgccacctatggtggtttatgtataa 15020288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34108532 - 34108431
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | |||||||||| |||||| |||||| ||  |||||||| | |||  |||||| ||||  ||||||  | |||||||||||||||||||    
T  34108532 tcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtata 34108433  T
Q  101 ag 102  Q
    ||    
T  34108432 ag 34108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 39371033 - 39370932
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||| ||| |||||||| |||||  |||||| ||||  ||||||| |||||||||||||||||||||    
T  39371033 tcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtata 39370934  T
Q  101 ag 102  Q
    ||    
T  39370933 ag 39370932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 33404534 - 33404622
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||| ||||||  | |||||||||||||||||||||    
T  33404534 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataag 33404622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 40888040 - 40888128
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | ||||||||||| |||||||||    
T  40888040 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtatgccacctaaggtggtttatgtataag 40888128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 13347221 - 13347134
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    |||||| |||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | ||||||||||||||||||||    
T  13347221 tcatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 13347134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2237382 - 2237282
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| | |||  |||||| ||||  ||||||  | |||||||||||||||||||    
T  2237382 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagggtgtatgtcacctaaggtggttcatgtata 2237283  T
Q  101 a 101  Q
    |    
T  2237282 a 2237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 14831650 - 14831555
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatg 96  Q
    |||||| ||| | ||||||||||||||||| |||||||||| | |||||| |||||  |||||| ||||  ||||||| | |||||||||||||||    
T  14831650 tcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9408124 - 9408225
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | ||||||||||||||||| |||||||||| |||||||| |||||  | |||| ||||   |||||  | || ||||||||||||||||    
T  9408124 tcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggcgtatgtcacctgaggtggttcatgtata 9408223  T
Q  101 ag 102  Q
    ||    
T  9408224 ag 9408225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 17225410 - 17225324
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||  |||||| ||||   |||||| | |||| ||||||||||||||||    
T  17225410 tcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaag--agtatgccacctaaagtggttcatgtataag 17225324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 1815714 - 1815802
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| | |||  || ||| ||||  ||||||  | ||||| |||||||||||||||    
T  1815714 tcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaagggtgtatgtcacctaagatggttcatgtataag 1815802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 19124570 - 19124656
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||| ||| ||||||||||  |||||||||||||  |||||||||| | ||||||| ||||||| | || ||||||||||    
T  19124570 tcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtgtcaaa-tgtgtatgccatctaagatagtccatgtataag 19124656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 27553474 - 27553559
Alignment:
Q  17 tctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||||| |||||||||| |||||||| |||||  |||||| |||   | ||||| | ||||  |||||||||||||||    
T  27553474 tctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaatggtatatgccacctaaaatggttcatgtataag 27553559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 3987003 - 3987091
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||||    
T  3987003 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 3987091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 14023027 - 14022940
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | ||||||||||| ||||||||    
T  14023027 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataa 14022940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 3118147 - 3118233
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||| |||||||||| |||||||||| |||||||| |||||  | |||| ||||  ||||||| | |||||||||||||| ||||||    
T  3118147 atctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagggtgtatgccacctaaggtggttcatatataag 3118233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 15345757 - 15345843
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||| |||||||||| |||||||||| |||||||| ||| |  |||||| ||||  | ||||| | ||||||||||| |||||||||    
T  15345757 tcatcttttctttcaatgtttttgccacgtgtcacaaatgtat--gggtgtaaaagagtatatgccacctaaggtggttgatgtataag 15345843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 33732662 - 33732574
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||||    
T  33732662 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 33732574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 36315652 - 36315566
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||||    
T  36315652 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 36315566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 44958204 - 44958118
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | |||||||||||||||||||||    
T  44958204 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataag 44958118  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 16089913 - 16089827
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| |  ||||||||||||||||||||    
T  16089913 atctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataag 16089827  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 3830995 - 3831081
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||  | |||||||||||||||||||||    
T  3830995 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgt--gggtgtaaaagggtgtatgtcacctaaggtggttcatgtataag 3831081  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 37914336 - 37914421
Alignment:
Q  16 atctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataa 101  Q
    ||||||||||||||| |||||||||| |||||||| |||||  || ||| ||||  ||||||| | ||||||||||| ||||||||    
T  37914336 atctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataa 37914421  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 37498963 - 37499027
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgc 78  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  | |||| |||| ||||||||    
T  37498963 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaaaaggatgtatgc 37499027  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 14573087 - 14573000
Alignment:
Q  15 catctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||||||||||||| ||||||| || |||||||| |||||  || ||| ||||  || |||| | ||||||||||| |||||||||    
T  14573087 catctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaagggtggatgccacctaaggtggtttatgtataag 14573000  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 2509117 - 2509029
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| |||||  |||||| |||| |||||||  | |||||||||||||||||||||    
T  2509117 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatgtcacctaaggtggttcatgtataag 2509029  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 39249952 - 39250049
Alignment:
Q  5 catcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    |||||| | ||||||||||||||||| |||||||||| |||||||| |||||  |||||| ||||  ||||||| | ||||| |||||||||||||||    
T  39249952 catcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaagatggttcatgtataag 39250049  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34307223 - 34307324
Alignment:
Q  1 tcatcatcctctctcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtata 100  Q
    |||||| ||| | |||| |||||||||||| |||||||||| |||||||| |||||  || ||| ||||  ||||||| | ||||||||||| |||||||    
T  34307223 tcatcaccctttttcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtata 34307322  T
Q  101 ag 102  Q
    ||    
T  34307323 ag 34307324  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 10147041 - 10146970
Alignment:
Q  32 tttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataagg 103  Q
    |||||||||| ||||||||||||||  ||| |||||||  ||||||| | |||||||||| |||||||||||    
T  10147041 tttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataagg 10146970  T

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Target: scaffold0043 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 87262 - 87349
Alignment:
Q  14 tcatctcttctttcaatatttttgccacttgtcacaattgtgtcggggtgtcaaagtatgtatgctatctaaggtggttcatgtataag 102  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| | |||||  |||  ||||||| | |||||||||||||||||||||    
T  87262 tcatctcttctttcaatgtttttgccacgtgtcacaaatgtgt-gtggtgtacaagggtgtatgccacctaaggtggttcatgtataag 87349  T

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