View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16841_high_2 (Length: 459)
Name: NF16841_high_2
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16841_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 37680160 - 37680592
Alignment:
| Q |
19 |
acctacacatcttccaccgctgagcaggtgaggaccctcaaatgaatttaacagaaaatactacgatttgatattgaaattcgggtggaaaaactggctg |
118 |
Q |
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| T |
37680160 |
acctacacatcttccaccgctgagcaggtgagg-ccctcaaatgaatttaacagaaaatactacgatttgatattgaaattcgggtggaaaaactggctg |
37680258 |
T |
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| Q |
119 |
catgatgacataactggttttgtctttgatcgtatgtaggatttcaaagaagccatagcaatctaccctgacttgagtaacgtaaggtataatcataatg |
218 |
Q |
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| T |
37680259 |
catgatgacataactggttttgtctttgatcgtatgtaggatttcaaagaagccatagcaatctaccctgacttgagtaacgtaaggtataatcataatg |
37680358 |
T |
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| Q |
219 |
cattgctcaaaactgtttctattaggtgttctcaattcaaacacagctactaagattttttgaacaattatgcagcttgaaagatttggagttgctactt |
318 |
Q |
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| T |
37680359 |
cattgctcaaaactgtttctattaggtgttctcaattcaaacacagctactaagattttttgaacaattatgcagcttgaaagatttggagttgctactt |
37680458 |
T |
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| Q |
319 |
caagatattgtagctgctaaacaggacaattgtttatgacatggaaatgttggaattattagttaccttgaattggtttctgtgagtaaagcggctcgaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
37680459 |
caagatattgtagctgctaaacaggacaattgtttatgacatgaaaatgttggaattattagttaccttgaatttgtttatgtgagtaaagcggctcgaa |
37680558 |
T |
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| Q |
419 |
agtttgaggtttatcacaaggctaagatcctttg |
452 |
Q |
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| T |
37680559 |
agtttgaggtttatcacaaggctaagatcctttg |
37680592 |
T |
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