View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16841_high_4 (Length: 387)
Name: NF16841_high_4
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16841_high_4 |
 | |
|
| [»] scaffold0209 (6 HSPs) |
| | |
|
Alignment Details
Target: scaffold0209 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: scaffold0209
Description:
Target: scaffold0209; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 17626 - 17815
Alignment:
| Q |
24 |
agatcaaatatgaaccaagttgccagatctcgtaaccatacaagagtacatgagttcctaagtgcataagctgaagtacaaaaccgaagtggcaaatctc |
123 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
17626 |
agatcaaatatgaaccaagttgccaaatctcgtaaccatacaagagtacatgagttcctaagtgcataagctcaagtacaaaaccgaagtggcaaatctc |
17725 |
T |
|
| Q |
124 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaaccaagttgaatctgaacaattacaacaagtgaaagg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17726 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaaccaagttgaatctgaacaattacaacaagtggaagg |
17815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 8240 - 8424
Alignment:
| Q |
24 |
agatcaaatatgaaccaagttgccagatctcgtaaccatacaagagtacatgagttcctaagtgcataagctgaagtacaaaaccgaagtggcaaatctc |
123 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8240 |
agatcaaatatgaaccaagttgccaaatctcgtaaccatacaagagtacatgagttcctaagtgcataagctcaagtacaaaaccgaagtggcaaatcat |
8339 |
T |
|
| Q |
124 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaaccaagttgaatctgaacaattacaacaagtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8340 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaaccaagatgaatctgaacaattacaacaagtg |
8424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 21694 - 21878
Alignment:
| Q |
24 |
agatcaaatatgaaccaagttgccagatctcgtaaccatacaagagtacatgagttcctaagtgcataagctgaagtacaaaaccgaagtggcaaatctc |
123 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21694 |
agatcaaatatgaaccaagttgccaaatctcgtaaccatacaagagtacatgagttcctaagtgcataagctcaagtacaaaaccgaagtggcaaatcat |
21793 |
T |
|
| Q |
124 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaaccaagttgaatctgaacaattacaacaagtg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21794 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaaccaagatgaatctgaacaattacaacaagtg |
21878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 10738 - 10608
Alignment:
| Q |
239 |
caaaattcatatttttcaccattgttaattacaaccaaaattcacgaactgaactgctcccattattcaaacacaacctatattctcatggagatagaat |
338 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10738 |
caaaactcatatttttcaccattgttaattacaaccaaaattcaccaact-aactgctcccattattcaaacacaacctatattctcatggagatagaat |
10640 |
T |
|
| Q |
339 |
cttctgctgattgtgatatccaacatatactt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10639 |
cttctgctgattgtgatatccaacatatactt |
10608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 239 - 370
Target Start/End: Complemental strand, 24192 - 24062
Alignment:
| Q |
239 |
caaaattcatatttttcaccattgttaattacaaccaaaattcacgaactgaactgctcccattattcaaacacaacctatattctcatggagatagaat |
338 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24192 |
caaaactcatatttttcaccattgttaattacaaccaaaattcaccaact-aactgctcccattattcaaacacaacctatattctcatggagatagaat |
24094 |
T |
|
| Q |
339 |
cttctgctgattgtgatatccaacatatactt |
370 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
24093 |
cttctgctgattgtgatatccaacatatactt |
24062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0209; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 17497 - 17526
Alignment:
| Q |
204 |
aagtgaaagggttagaataagttgctaatt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
17497 |
aagtgaaagggttagaataagttgctaatt |
17526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 581423 - 581576
Alignment:
| Q |
24 |
agatcaaatatgaaccaagttgccagatctcgtaaccatacaagagtacatgagttcctaagtgcataagctgaagtacaaaaccgaagtggcaaatctc |
123 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
581423 |
agatcaaatatgaaccaagttgccaaatctcgtaaccatacaagagtacatgagttcctaagtgcataagctcaagtacaaaaccgaagtggcaaatctc |
581522 |
T |
|
| Q |
124 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaa |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
581523 |
aagtacaaaaccaggagtacaaaactggtacaaactctgaactaaagtactaaa |
581576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 581296 - 581325
Alignment:
| Q |
204 |
aagtgaaagggttagaataagttgctaatt |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
581296 |
aagtgaaagggttagaataagttgctaatt |
581325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University