View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16841_high_5 (Length: 372)

Name: NF16841_high_5
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16841_high_5
NF16841_high_5
[»] chr2 (13 HSPs)
chr2 (146-353)||(25368139-25368346)
chr2 (146-353)||(24501650-24501857)
chr2 (146-353)||(25371404-25371608)
chr2 (146-261)||(25366287-25366402)
chr2 (209-257)||(25368102-25368150)
chr2 (233-300)||(25338608-25338675)
chr2 (209-257)||(24501846-24501894)
chr2 (211-243)||(23159925-23159957)
chr2 (211-243)||(23571182-23571214)
chr2 (209-249)||(23647674-23647714)
chr2 (301-353)||(25366222-25366274)
chr2 (211-243)||(27631141-27631173)
chr2 (211-243)||(27769356-27769388)
[»] chr3 (22 HSPs)
chr3 (146-353)||(1992284-1992494)
chr3 (146-353)||(2720790-2720997)
chr3 (169-353)||(11397720-11397904)
chr3 (146-353)||(20157057-20157264)
chr3 (146-353)||(17387325-17387531)
chr3 (146-352)||(13600558-13600764)
chr3 (38-141)||(3246661-3246764)
chr3 (17-133)||(6813806-6813923)
chr3 (17-139)||(9362104-9362227)
chr3 (17-139)||(20559973-20560096)
chr3 (17-139)||(20562281-20562404)
chr3 (17-139)||(20564589-20564712)
chr3 (38-139)||(13089954-13090055)
chr3 (41-139)||(12777651-12777749)
chr3 (17-139)||(13096654-13096774)
chr3 (209-257)||(11397893-11397941)
chr3 (192-246)||(17387503-17387557)
chr3 (192-246)||(20157031-20157085)
chr3 (209-257)||(1992483-1992531)
chr3 (211-243)||(13136730-13136762)
chr3 (209-249)||(13600754-13600794)
chr3 (211-243)||(15629526-15629558)
[»] scaffold0402 (1 HSPs)
scaffold0402 (146-353)||(7361-7568)
[»] chr4 (11 HSPs)
chr4 (146-353)||(8103357-8103565)
chr4 (17-139)||(11497760-11497883)
chr4 (17-139)||(14686919-14687042)
chr4 (19-136)||(42710928-42711046)
chr4 (17-151)||(15348978-15349114)
chr4 (17-139)||(10629691-10629814)
chr4 (18-139)||(18290965-18291087)
chr4 (17-139)||(45235378-45235501)
chr4 (17-96)||(45240047-45240127)
chr4 (209-250)||(15409084-15409125)
chr4 (211-243)||(15260648-15260680)
[»] scaffold0278 (3 HSPs)
scaffold0278 (146-353)||(13490-13697)
scaffold0278 (146-240)||(16937-17031)
scaffold0278 (209-257)||(13453-13501)
[»] chr5 (14 HSPs)
chr5 (146-351)||(22948002-22948207)
chr5 (146-314)||(20575021-20575188)
chr5 (155-353)||(20919249-20919447)
chr5 (17-139)||(23601787-23601910)
chr5 (17-139)||(18487210-18487333)
chr5 (17-139)||(24218773-24218896)
chr5 (17-139)||(24939474-24939597)
chr5 (17-139)||(22827906-22828029)
chr5 (17-139)||(20445995-20446118)
chr5 (19-136)||(23711855-23711972)
chr5 (17-139)||(21282058-21282180)
chr5 (209-257)||(22948198-22948246)
chr5 (211-243)||(25007343-25007375)
chr5 (211-243)||(26847296-26847328)
[»] chr8 (7 HSPs)
chr8 (146-353)||(20375355-20375563)
chr8 (17-139)||(20040216-20040339)
chr8 (17-139)||(17619685-17619808)
chr8 (17-139)||(20001242-20001365)
chr8 (38-139)||(21854923-21855024)
chr8 (209-257)||(20375552-20375600)
chr8 (211-243)||(21830660-21830692)
[»] chr6 (10 HSPs)
chr6 (146-353)||(25631788-25631995)
chr6 (17-139)||(18188720-18188843)
chr6 (17-139)||(18852961-18853084)
chr6 (17-137)||(22062662-22062781)
chr6 (17-139)||(17818460-17818583)
chr6 (17-99)||(19586775-19586857)
chr6 (243-311)||(23518242-23518310)
chr6 (210-255)||(18729281-18729326)
chr6 (192-257)||(25631751-25631816)
chr6 (38-139)||(25966597-25966698)
[»] chr1 (5 HSPs)
chr1 (146-353)||(8652611-8652818)
chr1 (222-353)||(19363594-19363725)
chr1 (17-137)||(27045811-27045932)
chr1 (84-139)||(21785611-21785666)
chr1 (192-246)||(8652790-8652844)
[»] chr7 (18 HSPs)
chr7 (146-353)||(8782440-8782646)
chr7 (146-353)||(48802294-48802501)
chr7 (146-353)||(20107857-20108064)
chr7 (17-139)||(539906-540029)
chr7 (19-151)||(4311670-4311803)
chr7 (17-151)||(5396072-5396208)
chr7 (232-337)||(17921860-17921965)
chr7 (17-139)||(14222862-14222985)
chr7 (38-139)||(12565969-12566070)
chr7 (17-139)||(8783248-8783371)
chr7 (17-139)||(13355183-13355306)
chr7 (17-139)||(16326926-16327049)
chr7 (19-136)||(9581848-9581965)
chr7 (17-136)||(10439488-10439608)
chr7 (18-136)||(23514013-23514132)
chr7 (209-268)||(4791953-4792011)
chr7 (209-255)||(4791844-4791890)
chr7 (211-243)||(18287247-18287279)
[»] scaffold0117 (2 HSPs)
scaffold0117 (146-300)||(32046-32200)
scaffold0117 (209-255)||(45635-45681)
[»] scaffold1225 (1 HSPs)
scaffold1225 (154-340)||(1187-1372)
[»] scaffold0059 (2 HSPs)
scaffold0059 (146-261)||(11956-12071)
scaffold0059 (301-353)||(12084-12136)
[»] scaffold0013 (2 HSPs)
scaffold0013 (146-261)||(233327-233442)
scaffold0013 (301-353)||(233262-233314)
[»] scaffold0220 (1 HSPs)
scaffold0220 (17-139)||(9472-9595)
[»] scaffold0012 (2 HSPs)
scaffold0012 (17-139)||(8419-8542)
scaffold0012 (17-139)||(12591-12714)
[»] scaffold0566 (1 HSPs)
scaffold0566 (17-139)||(1551-1674)
[»] scaffold0026 (1 HSPs)
scaffold0026 (17-139)||(17301-17424)
[»] scaffold0035 (1 HSPs)
scaffold0035 (17-139)||(51693-51817)
[»] scaffold0031 (1 HSPs)
scaffold0031 (40-123)||(22215-22298)
[»] scaffold0485 (1 HSPs)
scaffold0485 (57-139)||(11064-11146)
[»] scaffold0090 (1 HSPs)
scaffold0090 (40-89)||(29729-29778)
[»] scaffold0206 (1 HSPs)
scaffold0206 (103-139)||(17772-17808)
[»] scaffold0375 (1 HSPs)
scaffold0375 (209-255)||(12283-12329)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 25368346 - 25368139
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  25368346 aataaatagataaatcaaagtggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggatacccccccgctgacttcctacg 25368247  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
    ||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  25368246 tgatggtgatgtttctctaataactaaaagtagcttccatgaatctttctaaaaggaggaaagaattaattgcataattaggaggcatcattaacacatg 25368147  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  25368146 gaggaaag 25368139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 24501650 - 24501857
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||    
T  24501650 aataaataaataaatcaaagtggggtggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccccctcactaactccttacg 24501749  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||  |||| |||||||||||    
T  24501750 tgaaggtgatgtttctctaataactcaaagtagcttccataaatccttctaaaaggaggaaagaattaattgcataattaggaggcattattaacacatg 24501849  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  24501850 gaggaaag 24501857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 25371608 - 25371404
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||||||||||||||||||||||||||| ||| || || |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25371608 aataaatagataaatcaaaatggggcggaagctaatttaattgtaaaagaggcatcactggatcatggaggaaaggataccccctcgctaacttcctacg 25371509  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
     ||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||||||||| |||||    ||||||||  ||||||    
T  25371508 agaaggtgatgtttctctaataactcaaagtag---ccataaatccttctaaaagaaggaaagaattaattgcacaattataaggcatcattggcacatg 25371412  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  25371411 gaggaaag 25371404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 25366402 - 25366287
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||||||||||||||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  25366402 aataaatagataaatcaaaatggggcggaagcaaatttaattgtaaaagagacatcactagatcatggaggaaaggataccccctcgctaacttcctacg 25366303  T
Q  246 tgaaggtgatgtttct 261  Q
     |||||||||||||||    
T  25366302 agaaggtgatgtttct 25366287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 25368150 - 25368102
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  25368150 catggaggaaaggataccccctcgctaacttcctacgtgaagatgatgt 25368102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 25338675 - 25338608
Alignment:
Q  233 ctaacttcctacgtgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaag 300  Q
    ||||| ||| ||||||||||| |||||||||||||||| |||||||||||| ||| || |||| ||||    
T  25338675 ctaacctcccacgtgaaggtgttgtttctctaataactaaaagtagcttccgtaattccttctgaaag 25338608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 24501846 - 24501894
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    ||||||||||||||||||| ||||||| ||||||| |||||| ||||||    
T  24501846 catggaggaaaggataccccctcgctatcttcctatgtgaagatgatgt 24501894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 23159957 - 23159925
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  23159957 tggaggaaaggataccctctcactaacttccta 23159925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 23571214 - 23571182
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  23571214 tggaggaaaggataccctctcactaacttccta 23571182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 23647674 - 23647714
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaa 249  Q
    |||||||||||| |||||| |||||| ||||||||||||||    
T  23647674 catggaggaaagaataccccctcgctgacttcctacgtgaa 23647714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 25366274 - 25366222
Alignment:
Q  301 aaggaaagaattaattgcataattaggttgcatcattaacacatggaggaaag 353  Q
    ||||||| ||||||||||| |||||||  ||||||||  ||||||||||||||    
T  25366274 aaggaaataattaattgcacaattaggaggcatcattggcacatggaggaaag 25366222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 27631141 - 27631173
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  27631141 tggaggaaaggataccctctcactaacttccta 27631173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 27769388 - 27769356
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  27769388 tggaggaaaggataccctctcactaacttccta 27769356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 1992284 - 1992494
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1992284 aataaatagataaatcaaagtggggtggaagcaaatatatttatgaaggagacatcactggatcatggaggaaaagataccccctcgctaacttcctacg 1992383  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattct---aaaagaaggaaagaattaattgcataattaggttgcatcattaacac 342  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||   |||||||||||| |||||||||||||||||||  |||||||||||||    
T  1992384 tgaaggtgatgtttctctaataactcaaagtagcttccattaatccttctaaaaaaagaaggaaataattaattgcataattaggaggcatcattaacac 1992483  T
Q  343 atggaggaaag 353  Q
    |||||||||||    
T  1992484 atggaggaaag 1992494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 2720790 - 2720997
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| || |||||| ||||||||||    
T  2720790 aataaatagataaatcaaagtggggcggaagcaaatatatttataaaggagacatcattggatcatgggagaaaggatatcccctcgctgacttcctacg 2720889  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||   |||||||| ||||||    
T  2720890 tgaaggtgatgtttctctaataactcaaagtagcttccataaatccttctaaaagaaggaaagaattaattgcataattgggagacatcattagcacatg 2720989  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  2720990 gaggaaag 2720997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 169 - 353
Target Start/End: Original strand, 11397720 - 11397904
Alignment:
Q  169 ggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgtttctctaataa 268  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| |||||| |||||||||||||||||||||||||||||||||    
T  11397720 ggcggaagcaaatatattcataaaggagacatcactggatcatggaggaaagaacaccccctcgctgacttcctacgtgaaggtgatgtttctctaataa 11397819  T
Q  269 ctcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatggaggaaag 353  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  11397820 ctcaaagtagcttccataaatccttctaaaaggaggaaagaattaattgcataattaggaggcatcattaacacatggaggaaag 11397904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 20157264 - 20157057
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||||||||||||||||||||||||||||||| || || |||| ||||||||||| |||||| ||||||||||||||| ||| | |||||||||||    
T  20157264 aataaatagataaatcaaaatggggcggaagcaaatttaattgtaaaagagacatcactagatcatagaggaaaggataccccctcaccaacttcctacg 20157165  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
     |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||   |||||||  ||||||    
T  20157164 agaaggtgatgtttctctaattactcaaagtagcttccacaaatccttctaaaagaaggaaagaattaattgcacaattaggagacatcattggcacatg 20157065  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  20157064 gaggaaag 20157057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 17387325 - 17387531
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| |||||||||||||||| || || |||| ||||||||||| ||||| |||||||||||||||| |||||||||||||||||    
T  17387325 aataaatagataaatcaaagtggggcggaagcaaatttaattgtaaaagagacatcactagatca-ggaggaaaggataccccctcgctaacttcctacg 17387423  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
     ||||||||||||||||||  |||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||  ||||||||  ||||||    
T  17387424 agaaggtgatgtttctctatcaactaaaagtagcttccacaaatccttctaaaagaaggaaagaattaattgcacaattaggaggcatcattggcacatg 17387523  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  17387524 gaggaaag 17387531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 13600558 - 13600764
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||||| || ||| |||||||| |    
T  13600558 aataaaaagataaatcaaagtggggcgaaagcaaatatatttataaaggagacatcaccaaatcatggaggaaaggatacccccttgctgacttcctatg 13600657  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||| ||||||||| |||||||||| || |||||||||| |  ||||||||||||||||    
T  13600658 tgaaggtgatgtttctctagtaactaaaaggagcttccataaatccttctaaaaggaggaaagaatcaaatgcataattatgaggcatcattaacacatg 13600757  T
Q  346 gaggaaa 352  Q
    |||||||    
T  13600758 gaggaaa 13600764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 3246764 - 3246661
Alignment:
Q  38 ggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccacctta 137  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||  ||| |||||||||||  ||||||||||||||||||||||    
T  3246764 ggctaagaaacgatgtcctaaggggcaatcgaataaatgaataaaacaatcaaatgctctgaaacatgatgcaacaccttcacctccaaggtccacctta 3246665  T
Q  138 tgaa 141  Q
    ||||    
T  3246664 tgaa 3246661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 6813806 - 6813923
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  | | ||||||||||||     
T  6813806 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttctgatacatgatgcaacatc 6813905  T
Q  116 ttcacctccaaggtccac 133  Q
    ||||||||||||||||||    
T  6813906 ttcacctccaaggtccac 6813923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 9362227 - 9362104
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  9362227 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 9362128  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  9362127 ttcacctccaaggtctaccttatg 9362104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 20559973 - 20560096
Alignment:
Q  17 agacaaggtgttaaa-tggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    ||||||||||||||| || |  |||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  20559973 agacaaggtgttaaaatgatcgggctaagaaatgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 20560072  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  20560073 ttcacctccaaggtccaccttatg 20560096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 20562281 - 20562404
Alignment:
Q  17 agacaaggtgttaaa-tggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    ||||||||||||||| || |  |||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  20562281 agacaaggtgttaaaatgatcgggctaagaaatgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 20562380  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  20562381 ttcacctccaaggtccaccttatg 20562404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 20564589 - 20564712
Alignment:
Q  17 agacaaggtgttaaa-tggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    ||||||||||||||| || |  |||||||||| |||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  20564589 agacaaggtgttaaaatgatcgggctaagaaatgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 20564688  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  20564689 ttcacctccaaggtccaccttatg 20564712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 13090055 - 13089954
Alignment:
Q  38 ggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccacctta 137  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||  ||||||||||||||| ||||||    
T  13090055 ggctaagaaacgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacaccttcacctccaaggtctacctta 13089956  T
Q  138 tg 139  Q
    ||    
T  13089955 tg 13089954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 12777749 - 12777651
Alignment:
Q  41 taagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccaccttatg 139  Q
    |||||||||||||  |||||||||||| |||||||| |||| ||||||||||||||| | | ||||| |||||  ||||||||||||||||||||||||    
T  12777749 taagaaacgatgtgctaaggggcaatcaaataaatgcataagacaatcaaatgttccgatacatgatacaacaccttcacctccaaggtccaccttatg 12777651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 13096654 - 13096774
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||| ||||      
T  13096654 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatggaaca-- 13096751  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
      ||||||||||||| ||||||||    
T  13096752 -ccacctccaaggtctaccttatg 13096774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 11397893 - 11397941
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  11397893 catggaggaaaggataccccctcgctaacttcctacgtgaagatgatgt 11397941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 17387503 - 17387557
Alignment:
Q  192 aggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacgt 246  Q
    ||||| ||||| |||  ||||||||||||||||||| |||||| |||||||||||    
T  17387503 aggaggcatcattggcacatggaggaaaggataccccctcgctgacttcctacgt 17387557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Complemental strand, 20157085 - 20157031
Alignment:
Q  192 aggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacgt 246  Q
    ||||||||||| |||  ||||||||||||||||||| |||| | |||||||||||    
T  20157085 aggagacatcattggcacatggaggaaaggataccccctcgttgacttcctacgt 20157031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 1992483 - 1992531
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    ||||||||||||||||||| |||||  ||||||||||| ||| ||||||    
T  1992483 catggaggaaaggataccccctcgccgacttcctacgtaaagatgatgt 1992531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 13136762 - 13136730
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  13136762 tggaggaaaggataccctctcactaacttccta 13136730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 13600754 - 13600794
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaa 249  Q
    ||||||||||| ||||||| ||| |||||||||||||||||    
T  13600754 catggaggaaatgataccccctcactaacttcctacgtgaa 13600794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 15629558 - 15629526
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  15629558 tggaggaaaggataccctctcactaacttccta 15629526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 7361 - 7568
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||    
T  7361 aataaatagataaatagaagtggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaagaatacccccttgctaacttcctacg 7460  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |  |||||||||||  |||    
T  7461 tgaaggtgatgtttctctaataactcaaagtagcttccataaatccttctaaaagaaggaaagaattaattgcacaattaagaggcatcattaacgtatg 7560  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  7561 gaggaaag 7568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 8103565 - 8103357
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaa-tatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctac 244  Q
    ||||||||||||||||||| ||||||||||||||| | || || |||| |||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  8103565 aataaatagataaatcaaagtggggcggaagcaaaatttaattgtaaaagagacatcactggatcatggaggaaaggatactccctcgctaacttcctac 8103466  T
Q  245 gtgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacat 344  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||||| | |||||    
T  8103465 gtgaaggtgatgtttctctaataactcaaagtagcttccacaaatccttctaaaagaaggaaagaattaattgcataattaggaggcatcatcagcacat 8103366  T
Q  345 ggaggaaag 353  Q
    |||||||||    
T  8103365 ggaggaaag 8103357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 11497883 - 11497760
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||      
T  11497883 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 11497784  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  11497783 ttcacctccaaggtccaccttatg 11497760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 14687042 - 14686919
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| | |||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||  | | |||||||||||      
T  14687042 agacaaggtgttgaaatgatcaggctaagaaacgatgtcctaaggggcaatacaataaatgaataaaacaatcaaatgttctgatacatgatgcaacacc 14686943  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  14686942 ttcacctccaaggtccaccttatg 14686919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 42711046 - 42710928
Alignment:
Q  19 acaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatatt 117  Q
    |||||||||| |||||||  || |||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| | |||||||||||  ||    
T  42711046 acaaggtgttgaaatggtcgggataagaaacgatgtcctaaggggcaatcaaataaatgaataacacaatcaaatgttccaatacatgatgcaacacctt 42710947  T
Q  118 cacctccaaggtccacctt 136  Q
    |||||||||||||||||||    
T  42710946 cacctccaaggtccacctt 42710928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 15349114 - 15348978
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaa-taaatgaataaaacaatcaaatgttccaaaatatgatgcaacat 114  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| || ||||||||||||| ||||||||||||| | | |||||||||||     
T  15349114 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaaataaatgaataaaataatcaaatgttccgatacatgatgcaacac 15349015  T
Q  115 attcacctccaaggtccaccttatgaaagtcaataaa 151  Q
     ||||||||||||||||||||||||||  ||||||||    
T  15349014 cttcacctccaaggtccaccttatgaacttcaataaa 15348978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 10629691 - 10629814
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  |||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  10629691 agacaaggtgttgaaatgatcgggctaagaaacggtgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 10629790  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  10629791 ttcacctccaaggtctaccttatg 10629814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 18290965 - 18291087
Alignment:
Q  18 gacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatat 116  Q
    ||||||||||| ||||| |  ||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| | | |||||||||||  |    
T  18290965 gacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggaaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacct 18291064  T
Q  117 tcacctccaaggtccaccttatg 139  Q
    | ||||| |||||||||||||||    
T  18291065 taacctctaaggtccaccttatg 18291087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 45235501 - 45235378
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  |||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||  | | |||||||||||      
T  45235501 agacaaggtgttgaaatgatcgggctaagaaacgatttcctaaggggcaatcaaataaatgaataaaacaatcaaatgttctgatacatgatgcaacacc 45235402  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    |||||||| |||||| ||||||||    
T  45235401 ttcacctcaaaggtctaccttatg 45235378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 45240127 - 45240047
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttc 96  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  45240127 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttc 45240047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 15409084 - 15409125
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaag 250  Q
    |||||| |||||||||||| |||||| |||||||||||||||    
T  15409084 catggatgaaaggataccccctcgctgacttcctacgtgaag 15409125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 15260680 - 15260648
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  15260680 tggaggaaaggataccctctcactaacttccta 15260648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 148; Significance: 5e-78; HSPs: 3)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 13697 - 13490
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||| |||||||||| |||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  13697 aataaataaataaatcaaagtggggcgggagaaaatatatctataaaggagacatcactagatcatggaggaaaggataccccctcgctaacttcttacg 13598  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
    |||||||||||||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  13597 tgaaggtgatgtttctgtaataaccgaaagtagcttccataaatccttctaaaagaaggaaagaattaattgcataattaggaggcatcattaacgcatg 13498  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  13497 gaggaaag 13490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 17031 - 16937
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttc 240  Q
    |||||||| |||||||||| |||||||| || |||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  17031 aataaataaataaatcaaagtggggcgggagaaaatatatctataaaggagacatcactagatcatggaggaaaggataccccctcgctaacttc 16937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 13501 - 13453
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    |||||||||||||||| || |||||| ||||||||||| ||| ||||||    
T  13501 catggaggaaaggataacccctcgctgacttcctacgtaaagatgatgt 13453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 146 - 351
Target Start/End: Original strand, 22948002 - 22948207
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||| ||||||||||    
T  22948002 aataaaaagataaatcaaagtggggcagaagcaaatatatttataaaggagacatcactgaatcatggaggaaacgataccccctcgctgacttcctacg 22948101  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
    |||||||| ||| |||||||||||| ||||||||||||||||||| ||||||| | ||||||||||||| |||||||||||| |||||||||||||||||    
T  22948102 tgaaggtggtgtctctctaataactaaaagtagcttccataaatccttctaaatggaggaaagaattaagtgcataattaggatgcatcattaacacatg 22948201  T
Q  346 gaggaa 351  Q
    ||||||    
T  22948202 gaggaa 22948207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 314
Target Start/End: Original strand, 20575021 - 20575188
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||     
T  20575021 aataaatagataaatcaaagtggg-cggaagcaaatatatttataaaggagatatcactggatcatggaggaaaggataccccctcgctaacttcctaca 20575119  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaa 314  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20575120 tcaaggtgatgtttctctaataactcaaagtagcttccataaatccttctaaaagaaggaaagaattaa 20575188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 155 - 353
Target Start/End: Complemental strand, 20919447 - 20919249
Alignment:
Q  155 ataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacgtgaaggtga 254  Q
    |||||||||| | ||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||    
T  20919447 ataaatcaaagtagggcggaagcaaatataattgtaaaagagacatcactggatcatggaggaaatgataccccctcgccaactttctacgtgaaggtga 20919348  T
Q  255 tgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatggaggaaag 353  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||  ||||||| || |||||||||||||    
T  20919347 tgtttctctaataattcaaagtagcttgcataaatccttctaaaagaaggaaagaactaattgcataaataggaggcatcatcaaaacatggaggaaag 20919249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 23601910 - 23601787
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||||     
T  23601910 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacatc 23601811  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    |||| |||||||||||||||||||    
T  23601810 ttcatctccaaggtccaccttatg 23601787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 18487333 - 18487210
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  | | |||||||||||      
T  18487333 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttctgatacatgatgcaacacc 18487234  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  18487233 ttcacctccaaggtccaccttatg 18487210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 24218773 - 24218896
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||  | | |||||||||||      
T  24218773 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttctgatacatgatgcaacacc 24218872  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  24218873 ttcacctccaaggtccaccttatg 24218896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 24939474 - 24939597
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  24939474 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 24939573  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  24939574 ttcacctccaaggtctaccttatg 24939597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 22828029 - 22827906
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||  | | |||||||||||      
T  22828029 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaataatcaaatgttctgatacatgatgcaacacc 22827930  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  22827929 ttcacctccaaggtctaccttatg 22827906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 20446118 - 20445995
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || | |||||||||||| |||||||||||||| | | |||||||||||      
T  20446118 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcactcaagtaaatgaataaagcaatcaaatgttccgatacatgatgcaacacc 20446019  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  20446018 ttcacctccaaggtctaccttatg 20445995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 23711972 - 23711855
Alignment:
Q  19 acaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatatt 117  Q
    |||||||||| |||||||  || |||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||  |  |||||||||||  ||    
T  23711972 acaaggtgttgaaatggtcgggataagaaacgatgtcctaaggggcaaccaaataaatgaataacacaatcaaatgttcc-gatcatgatgcaacacctt 23711874  T
Q  118 cacctccaaggtccacctt 136  Q
    |||||||||||||||||||    
T  23711873 cacctccaaggtccacctt 23711855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 21282180 - 21282058
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||| | || ||||||||||||||| ||||||||||||| | | |||||||||||      
T  21282180 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggaactcaaataaatgaataaaa-aatcaaatgttccgatacatgatgcaacacc 21282082  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| | ||||||    
T  21282081 ttcacctccaaggtctatcttatg 21282058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 22948198 - 22948246
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    |||||||||| |||||||| |||||||||||||||||||||| ||||||    
T  22948198 catggaggaagggataccccctcgctaacttcctacgtgaagatgatgt 22948246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 25007375 - 25007343
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  25007375 tggaggaaaggataccctctcactaacttccta 25007343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 26847296 - 26847328
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  26847296 tggaggaaaggataccctctcactaacttccta 26847328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 20375355 - 20375563
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||  | |||||||     
T  20375355 aataaatagataaatcaaagtggggcggaagtaaatatattcataaaggagacatcactggatcatggaggaaaggataccccctcgccgatttcctaca 20375454  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattct-aaaagaaggaaagaattaattgcataattaggttgcatcattaacacat 344  Q
    ||||||||||||||||||||||| | ||||||||||||||||||| |||| ||||| |||||||||| || ||||||||||||  |||||||||||||||    
T  20375455 tgaaggtgatgtttctctaataaataaaagtagcttccataaatccttctaaaaaggaggaaagaatcaaatgcataattaggaggcatcattaacacat 20375554  T
Q  345 ggaggaaag 353  Q
    |||||||||    
T  20375555 ggaggaaag 20375563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 20040339 - 20040216
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| | ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| | | | ||||||||||||     
T  20040339 agacaaggtgttgaaatgatcaggctaagaaacgatttcctaaggggcaatcaaataaatgaataaaacaatcaaatgtttcgatacatgatgcaacatc 20040240  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  20040239 ttcacctccaaggtccaccttatg 20040216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 17619685 - 17619808
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  17619685 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcagtcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 17619784  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  17619785 ttcacctccaaggtctaccttatg 17619808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 20001242 - 20001365
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||| ||||||| |||||||| |||||||| | | |||||||||||      
T  20001242 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaatgaatgaatcaaacaatccaatgttccgatacatgatgcaacacc 20001341  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  20001342 ttcacctccaaggtccaccttatg 20001365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 139
Target Start/End: Complemental strand, 21855024 - 21854923
Alignment:
Q  38 ggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccacctta 137  Q
    ||||||||||||||||| ||||||||| || |||||| |||||||||||||||||||| | | | |||||||||||  ||||||||||||||| ||||||    
T  21855024 ggctaagaaacgatgtcctaaggggcactcaaataaacgaataaaacaatcaaatgtttcgatacatgatgcaacaccttcacctccaaggtctacctta 21854925  T
Q  138 tg 139  Q
    ||    
T  21854924 tg 21854923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 20375552 - 20375600
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    ||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  20375552 catggaggaaaggatgcccgctcgctaacttcctacgtgaagatgatgt 20375600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 21830660 - 21830692
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  21830660 tggaggaaaggataccctctcactaacttccta 21830692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 7e-71; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 25631995 - 25631788
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| ||||||| |||||||  || || |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25631995 aataaatagataaatcaaagtggggcgaaagcaaaattaattgtaaaagagacatcactggatcatggaggaaaggataccccctcgctaacttcctacg 25631896  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
     |||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||| ||||||||||| |||||||  ||||||||  ||||||    
T  25631895 agaaggtgatgtttctctaataactcaaagtagcttccacaaatccttttaaaagaaggaaaaaattaattgcacaattaggaggcatcattggcacatg 25631796  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  25631795 gaggaaag 25631788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 18188843 - 18188720
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||      
T  18188843 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcactcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 18188744  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  18188743 ttcacctccaaggtctaccttatg 18188720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 18852961 - 18853084
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||||  | | |||||||||||      
T  18852961 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaattaaataaatgaataaaacaatcaaatgttctgatacatgatgcaacacc 18853060  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  18853061 ttcacctccaaggtccaccttatg 18853084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 22062781 - 22062662
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| |||||||||||||  |||||||||||||| | | ||||||||||||     
T  22062781 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataa--caatcaaatgttccgatacatgatgcaacatc 22062684  T
Q  116 ttcacctccaaggtccacctta 137  Q
    ||||||||||||||||||||||    
T  22062683 ttcacctccaaggtccacctta 22062662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 17818460 - 17818583
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || ||||||||||||||| ||||||||||||  | | |||||||||||      
T  17818460 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcactcaaataaatgaataaaaaaatcaaatgttctgatacatgatgcaacacc 17818559  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  17818560 ttcacctccaaggtctaccttatg 17818583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 19586857 - 19586775
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaa 99  Q
    |||||||||||| ||||||   ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  19586857 agacaaggtgttgaaatggccgggctaagaaacgatgtcctaaggggcaatcgaataaatgaat-aaacaatcaaatgttccaa 19586775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 23518310 - 23518242
Alignment:
Q  243 acgtgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaat 311  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| |||| |||||    
T  23518310 acgtgaaggtggtgtttctctaataactaaaattagcttccataaatcattctaaaaggaggatagaat 23518242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 18729281 - 18729326
Alignment:
Q  210 atggaggaaaggataccctctcgctaacttcctacgtgaaggtgat 255  Q
    |||||||||||||||||| |||||| ||||||||||||||| ||||    
T  18729281 atggaggaaaggataccccctcgctgacttcctacgtgaagatgat 18729326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 25631816 - 25631751
Alignment:
Q  192 aggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgt 257  Q
    ||||| ||||| |||  ||||||||||||||||||| |||||| ||||||||||| ||| ||||||    
T  25631816 aggaggcatcattggcacatggaggaaaggataccccctcgctgacttcctacgtaaagatgatgt 25631751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 25966597 - 25966698
Alignment:
Q  38 ggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccacctta 137  Q
    |||||||||| ||||||||||| ||||| || || |  ||| |||| || |||||| | || || |||||| | || ||||||||||||||||| |||||    
T  25966597 ggctaagaaatgatgtcataagaggcaaccgcatgaccgaagaaaataaccaaatgcttcagaacatgatggagcaaattcacctccaaggtcctcctta 25966696  T
Q  138 tg 139  Q
    ||    
T  25966697 tg 25966698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 8652611 - 8652818
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| |||||| ||||||||| || || |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| |    
T  8652611 aataaatagataaatcaaagtggggctgaagcaaatttaattgtaaaagagacatcactagatcatggaggaaaggataccccctcgctaacttcctaag 8652710  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
     |||||||||||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||  ||||||||  ||||||    
T  8652711 agaaggtgatgtttctctaataattaaaagtagcttccacaaatccttctaaaagaaggaaagaattaattgcacaattaggaggcatcattggcacatg 8652810  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  8652811 gaggaaag 8652818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 19363594 - 19363725
Alignment:
Q  222 ataccctctcgctaacttcctacgtgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcata 321  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  19363594 ataccccctcgctaacttcctacgtgaaggtgatgtttctctaataactcaaagtagcttccataaatccttctaaaagaaggaaagaattaattgcaca 19363693  T
Q  322 attaggttgcatcattaacacatggaggaaag 353  Q
    ||| ||  |||||||||||| |||||||||||    
T  19363694 atttggaggcatcattaacatatggaggaaag 19363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 27045811 - 27045932
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||||     
T  27045811 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacatc 27045910  T
Q  116 ttcacctccaaggtccacctta 137  Q
    ||||||||||||||||||||||    
T  27045911 ttcacctccaaggtccacctta 27045932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 84 - 139
Target Start/End: Complemental strand, 21785666 - 21785611
Alignment:
Q  84 caatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccaccttatg 139  Q
    |||||||||||||| | | |||||||||||  |||||||||||| |||||||||||    
T  21785666 caatcaaatgttccgatacatgatgcaacaccttcacctccaagatccaccttatg 21785611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 8652790 - 8652844
Alignment:
Q  192 aggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacgt 246  Q
    ||||| ||||| |||  ||||||||||||||||||| |||||| |||||||||||    
T  8652790 aggaggcatcattggcacatggaggaaaggataccccctcgctgacttcctacgt 8652844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 8782646 - 8782440
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |    
T  8782646 aataaatagataaatcaaagtggggcggaagcaaatat--tcataaaggagacatcactggatcatggaggaaaggataccccctcgctgacttcctatg 8782549  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattct-aaaagaaggaaagaattaattgcataattaggttgcatcattaacacat 344  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| |||| ||||| |||||||||| || |||||||| ||   |||||||||||||||    
T  8782548 tgaaggtgatgtttctctaataacgaaaagtagcttccataaatccttctaaaaaggaggaaagaatcaaatgcataataagaaggcatcattaacacat 8782449  T
Q  345 ggaggaaag 353  Q
    |||||||||    
T  8782448 ggaggaaag 8782440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 146 - 353
Target Start/End: Complemental strand, 48802501 - 48802294
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| |||||||||||||||  || || |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  48802501 aataaatagataaatcaaagtggggcggaagcaaacttaattgtaaaagagacatcactggatcatggaggaaaggataccccctcgctaacttcctacg 48802402  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
      |||||||||||| ||||||||||  |||||||||||| ||||| || ||||||||||||||||||||||||| |||||||  ||||||||  |||| |    
T  48802401 aaaaggtgatgtttatctaataactagaagtagcttccacaaatccttataaaagaaggaaagaattaattgcacaattaggaggcatcattggcacaag 48802302  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  48802301 gaggaaag 48802294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 146 - 353
Target Start/End: Original strand, 20107857 - 20108064
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||| |||||||||||||||||||| ||||| ||| || || |||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  20107857 aataactagataaatcaaaatggggcagaagctaatttaattgtaaaagagacatcactggatcatagaggaaaggataccccctcgctaacttcctacg 20107956  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaacacatg 345  Q
     | |||||||||||||||||||||| |||||| |||||| ||||| ||| |||||||||||||||||||||||| || || |  ||||||||  ||||||    
T  20107957 agtaggtgatgtttctctaataactaaaagtaacttccacaaatccttccaaaagaaggaaagaattaattgcacaaataagaggcatcattggcacatg 20108056  T
Q  346 gaggaaag 353  Q
    ||||||||    
T  20108057 gaggaaag 20108064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 540029 - 539906
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | ||||||||||||     
T  540029 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacatc 539930  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  539929 ttcacctccaaggtccaccttatg 539906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 4311670 - 4311803
Alignment:
Q  19 acaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatatt 117  Q
    |||||||||| |||||||  || |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||  ||    
T  4311670 acaaggtgttgaaatggtcgggataagaaacgatgtcctaaggggcaatcgaataaatgaataaaacaatcaaatgctccgaaacatgatgcaacacctt 4311769  T
Q  118 cacctccaaggtccaccttatgaaagtcaataaa 151  Q
    |||||||||||||||||| |||||  ||||||||    
T  4311770 cacctccaaggtccacctaatgaacctcaataaa 4311803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 151
Target Start/End: Original strand, 5396072 - 5396208
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaa-taaatgaataaaacaatcaaatgttccaaaatatgatgcaacat 114  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||| | | |||||||||||     
T  5396072 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacac 5396171  T
Q  115 attcacctccaaggtccaccttatgaaagtcaataaa 151  Q
    |||||||||||||||||||||||||||  ||||||||    
T  5396172 attcacctccaaggtccaccttatgaacttcaataaa 5396208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 232 - 337
Target Start/End: Original strand, 17921860 - 17921965
Alignment:
Q  232 gctaacttcctacgtgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgc 331  Q
    ||||||||||||||  || |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||  ||    
T  17921860 gctaacttcctacgaaaatgtgatgtttctctaataactcaaagtagcttccataaatccttctaaaagaatgaaagaattaattgcacaattaggaggc 17921959  T
Q  332 atcatt 337  Q
    ||||||    
T  17921960 atcatt 17921965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 14222985 - 14222862
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| | | |||||||||||      
T  14222985 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaatgaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 14222886  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  14222885 ttcacctccaaggtccaccttatg 14222862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 38 - 139
Target Start/End: Original strand, 12565969 - 12566070
Alignment:
Q  38 ggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccacctta 137  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||  |||||||||||| || ||||||    
T  12565969 ggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacaccttcacctccaagttctacctta 12566068  T
Q  138 tg 139  Q
    ||    
T  12566069 tg 12566070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 8783371 - 8783248
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||| ||||| |||||||  ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||||| || |||| ||||||| |||      
T  8783371 agacaaagtgttgaaatggtcgggctaagaaacgatgtcctaaggggcaattgaataaatgaagaaaataatcaaatgctctaaaacatgatgctacacc 8783272  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  8783271 ttcacctccaaggtccaccttatg 8783248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 13355183 - 13355306
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| |  ||||||||||||||||||||||||||||| | | |||||||||||      
T  13355183 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcacttaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 13355282  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  13355283 ttcacctccaaggtctaccttatg 13355306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 16327049 - 16326926
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||| |||||| ||| |||||||||||||||| |||||||| | | |||||||||||      
T  16327049 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggagcaatcaaatgaatgaataaaacaatccaatgttccgatacatgatgcaacacc 16326950  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||||||||||    
T  16326949 ttcacctccaaggtccaccttatg 16326926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 136
Target Start/End: Original strand, 9581848 - 9581965
Alignment:
Q  19 acaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatatt 117  Q
    |||||||||| |||||||  || |||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||  |  |||||||||||  ||    
T  9581848 acaaggtgttgaaatggtcgggataagaaacgatgtcctaaggggcaatcaaataaatgaataacacaatcaaatgttcc-gatcatgatgcaacacctt 9581946  T
Q  118 cacctccaaggtccacctt 136  Q
    |||||||||||||||||||    
T  9581947 cacctccaaggtccacctt 9581965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 10439608 - 10439488
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||  | | |||||||||||      
T  10439608 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcactcaaataaatgcataaaacaatcaaatgttctgatacatgatgcaacacc 10439509  T
Q  116 ttcacctccaaggtccacctt 136  Q
    ||||||||||||||| |||||    
T  10439508 ttcacctccaaggtctacctt 10439488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 23514013 - 23514132
Alignment:
Q  18 gacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatat 116  Q
    ||||||||||| ||||| |  |||||||||| |||||| |||||||||||| ||||||||||||| |||||| |||||||| | | |||||||||||  |    
T  23514013 gacaaggtgttgaaatgatcgggctaagaaatgatgtcctaaggggcaatcaaataaatgaataacacaatccaatgttccgatacatgatgcaacacct 23514112  T
Q  117 tcacctccaaggtccacctt 136  Q
    ||||||| ||||||||||||    
T  23514113 tcacctctaaggtccacctt 23514132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 4792011 - 4791953
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgatgtttctctaataa 268  Q
    ||||||||||||||||||| |||||| ||||||||||||  ||||||| |||||||||||    
T  4792011 catggaggaaaggataccccctcgctgacttcctacgtg-tggtgatgcttctctaataa 4791953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 4791890 - 4791844
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgat 255  Q
    ||||||||||||||||||| ||| || ||||||||||||||| ||||    
T  4791890 catggaggaaaggataccccctccctgacttcctacgtgaagatgat 4791844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 18287247 - 18287279
Alignment:
Q  211 tggaggaaaggataccctctcgctaacttccta 243  Q
    ||||||||||||||||||||| |||||||||||    
T  18287247 tggaggaaaggataccctctcactaacttccta 18287279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 146 - 300
Target Start/End: Complemental strand, 32200 - 32046
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    ||||||||||||||||||| |||||||||||||||| || || |||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  32200 aataaatagataaatcaaagtggggcggaagcaaatttaattgtaaaagagacatcactggatcatggaggaaaagataccccctcgctaacttcctacg 32101  T
Q  246 tgaaggtgatgtttctctaataactcaaagtagcttccataaatcattctaaaag 300  Q
     ||| |||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  32100 agaatgtgatgtttctctaataactcaaagtagcttccacaaatccttctaaaag 32046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 45681 - 45635
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgat 255  Q
    ||||||||||||||||||| |||||| | ||||||||||||| ||||    
T  45681 catggaggaaaggataccccctcgcttagttcctacgtgaagatgat 45635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1225 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: scaffold1225
Description:

Target: scaffold1225; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 154 - 340
Target Start/End: Original strand, 1187 - 1372
Alignment:
Q  154 gataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacgtgaaggtg 253  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||  ||| |||  || ||||||||||| | ||| || ||||||||||||||||||    
T  1187 gataaatcaatgtggggcggaagcaaatatatttataaaggagacatagctgaatctggggggaaaggatactc-ctcactgacttcctacgtgaaggtg 1285  T
Q  254 atgtttctctaataactcaaagtagcttccataaatcattctaaaagaaggaaagaattaattgcataattaggttgcatcattaac 340  Q
     |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||| || | ||||||||||  |||||||||||    
T  1286 gtgtttctctaataactaaaagtagcttccataaatccttctaaaaggaggaaagaatcaaatacataattaggaggcatcattaac 1372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 11956 - 12071
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||||||||||||||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  11956 aataaatagataaatcaaaatggggcggaagcaaatttaattgtaaaagagacatcactagatcatggaggaaaggataccccctcgctaacttcctacg 12055  T
Q  246 tgaaggtgatgtttct 261  Q
     |||||||||||||||    
T  12056 agaaggtgatgtttct 12071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 12084 - 12136
Alignment:
Q  301 aaggaaagaattaattgcataattaggttgcatcattaacacatggaggaaag 353  Q
    ||||||| ||||||||||| |||||||  ||||||||  ||||||||||||||    
T  12084 aaggaaataattaattgcacaattaggaggcatcattggcacatggaggaaag 12136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 146 - 261
Target Start/End: Complemental strand, 233442 - 233327
Alignment:
Q  146 aataaatagataaatcaaaatggggcggaagcaaatatatttataaaggagacatcactggatcatggaggaaaggataccctctcgctaacttcctacg 245  Q
    |||||||||||||||||||||||||||||||||||| || || |||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  233442 aataaatagataaatcaaaatggggcggaagcaaatttaattgtaaaagagacatcactagatcatggaggaaaggataccccctcgctaacttcctacg 233343  T
Q  246 tgaaggtgatgtttct 261  Q
     |||||||||||||||    
T  233342 agaaggtgatgtttct 233327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 233314 - 233262
Alignment:
Q  301 aaggaaagaattaattgcataattaggttgcatcattaacacatggaggaaag 353  Q
    ||||||| ||||||||||| |||||||  ||||||||  ||||||||||||||    
T  233314 aaggaaataattaattgcacaattaggaggcatcattggcacatggaggaaag 233262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 9595 - 9472
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||||    
T  9595 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacata 9496  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||||| ||||||    
T  9495 ttcacctccaaggtccaacttatg 9472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 8542 - 8419
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||      
T  8542 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaatgggcaatcaaataaatgaataaaacaatcaaatgttccaatacatgatgcaacacc 8443  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  8442 ttcacctccaaggtctaccttatg 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 12714 - 12591
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| | |||||||||||      
T  12714 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaatgggcaatcaaataaatgaataaaacaatcaaatgttccaatacatgatgcaacacc 12615  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  12614 ttcacctccaaggtctaccttatg 12591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 1551 - 1674
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  |||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||| | | |||||||||||      
T  1551 agacaaggtgttgaaatgatcgggctaagaaatgatgtcctaaggggcaatcaaataaatgaataaaacaatcaaatgttccgatacatgatgcaacacc 1650  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||| ||||||||||||    
T  1651 ttcacctccaaagtccaccttatg 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 17301 - 17424
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacata 115  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| | | |||||||||||      
T  17301 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaataaatgaatacaacaatcaaatgttccgatacatgatgcaacacc 17400  T
Q  116 ttcacctccaaggtccaccttatg 139  Q
    ||||||||||||||| ||||||||    
T  17401 ttcacctccaaggtctaccttatg 17424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 51817 - 51693
Alignment:
Q  17 agacaaggtgtt-aaatggttaggctaagaaacgatgtcataaggggcaatcgaa-taaatgaataaaacaatcaaatgttccaaaatatgatgcaacat 114  Q
    |||||||||||| ||||| |  ||||||||||||||||| |||||||||||| || || |||||||||||||||||||||||| | | |||||||||||     
T  51817 agacaaggtgttgaaatgatcgggctaagaaacgatgtcctaaggggcaatcaaaatacatgaataaaacaatcaaatgttccgatacatgatgcaacac 51718  T
Q  115 attcacctccaaggtccaccttatg 139  Q
     ||||||||||||||||||||||||    
T  51717 cttcacctccaaggtccaccttatg 51693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 22215 - 22298
Alignment:
Q  40 ctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctc 123  Q
    ||||||||| ||||| |||||||| ||| ||||||||||||||||||||||||  ||| ||| |||||||||||  ||||||||    
T  22215 ctaagaaacaatgtcctaaggggcgatcaaataaatgaataaaacaatcaaattctccgaaacatgatgcaacaccttcacctc 22298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 11146 - 11064
Alignment:
Q  57 aaggggcaatcgaataaatgaataaaacaatcaaatgttccaaaatatgatgcaacatattcacctccaaggtccaccttatg 139  Q
    |||||||||||||||||||| | |||| ||||||||| ||   || ||| |||||||  ||||||||||||||||||||||||    
T  11146 aaggggcaatcgaataaatgtagaaaataatcaaatgctctggaacatgctgcaacaccttcacctccaaggtccaccttatg 11064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 29729 - 29778
Alignment:
Q  40 ctaagaaacgatgtcataaggggcaatcgaataaatgaataaaacaatca 89  Q
    ||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  29729 ctaagaaactatgtcctaaggggcaatcaaataaatgaataaaacaatca 29778  T

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Target: scaffold0206 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Complemental strand, 17808 - 17772
Alignment:
Q  103 atgatgcaacatattcacctccaaggtccaccttatg 139  Q
    |||||||||||| ||||||||||||||||||||||||    
T  17808 atgatgcaacatcttcacctccaaggtccaccttatg 17772  T

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Target: scaffold0375 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 255
Target Start/End: Original strand, 12283 - 12329
Alignment:
Q  209 catggaggaaaggataccctctcgctaacttcctacgtgaaggtgat 255  Q
    ||||||||||| ||||||| |||||| ||||||||||||||| ||||    
T  12283 catggaggaaatgataccccctcgctgacttcctacgtgaagatgat 12329  T

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