View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16841_low_1 (Length: 487)

Name: NF16841_low_1
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16841_low_1
NF16841_low_1
[»] chr5 (3 HSPs)
chr5 (1-473)||(6587167-6587639)
chr5 (1-47)||(12425535-12425581)
chr5 (1-29)||(10272491-10272519)
[»] chr7 (2 HSPs)
chr7 (1-47)||(30180015-30180061)
chr7 (1-47)||(39967884-39967930)
[»] chr6 (2 HSPs)
chr6 (1-47)||(9093616-9093662)
chr6 (1-29)||(415286-415314)
[»] chr4 (1 HSPs)
chr4 (1-47)||(25885823-25885869)
[»] chr1 (3 HSPs)
chr1 (1-47)||(30371112-30371158)
chr1 (1-47)||(49888731-49888777)
chr1 (1-29)||(11218005-11218033)
[»] scaffold0475 (1 HSPs)
scaffold0475 (1-29)||(11815-11843)
[»] chr8 (1 HSPs)
chr8 (5-41)||(10367715-10367751)
[»] chr3 (1 HSPs)
chr3 (7-47)||(25447310-25447350)


Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 6587167 - 6587639
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatctttaccgatcacttcactgtcgattacagtagcagaaaaaataaaggtatacataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6587167 aacaacttatagcttatacgaaaacaattgaagtttatttaatctttaccgatcacttcactgtcgattacagtagcagaaaaaataaaggtatacataa 6587266  T
Q  101 acatcatagaataagattgaagaacaagtaaagatttgaaatagttacctccaatgctcttttatcctcgcgatacaaactgctctatttcctgtaagcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6587267 acatcatagaataagattgaagaacaagtaaagatttgaaatagttacctccaatgctcttttatcctcgcgatacaaactgctctatttcctgtaagcc 6587366  T
Q  201 tcaaaccatgtttccgcaaatacgctttgcattcgtttaatttcaacgaatctatatcctttccacctgagaaatcgaatactgaattcaataaacatga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  6587367 tcaaaccatgtttccgcaaatacgctttgcattcgtttaatttcaacgaatctatatcctttccacctgagaaatcgaatactgaattcaaataacatga 6587466  T
Q  301 tcgattcgatacattattgttaatttacaattgatgatttggtagaaataaaaaccttgaaggagagaaacaacttttttggagagagattcgtcatcaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6587467 tcgattcgatacattattgttaatttacaattgatgatttggtagaaataaaaaccttgaaggagagaaacaactttttcggagagagattcgtcatcaa 6587566  T
Q  401 catcacaattatctgatcccgaagcttcatcgcgatcttcttcatcatcttcctcatcttcaatttcacaggt 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6587567 catcacaattatctgatcccgaagcttcatcgcgatcttcttcatcatcttcctcatcttcaatttcacaggt 6587639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 12425581 - 12425535
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    |||| |||||||||||||||||||||||| || ||||||| ||||||    
T  12425581 aacagcttatagcttatacgaaaacaatttaactttattttatcttt 12425535  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10272491 - 10272519
Alignment:
Q  1 aacaacttatagcttatacgaaaacaatt 29  Q
    |||||||||||||||||||||||||||||    
T  10272491 aacaacttatagcttatacgaaaacaatt 10272519  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30180061 - 30180015
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    |||| |||||||||||||||||||||||| || ||||||| ||||||    
T  30180061 aacagcttatagcttatacgaaaacaatttaactttattttatcttt 30180015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 39967930 - 39967884
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    ||||||||||||||  ||||||||||||| |||||||||| ||||||    
T  39967930 aacaacttatagctagtacgaaaacaatttaagtttattttatcttt 39967884  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9093616 - 9093662
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    |||| |||||||||||||||||||||||| || ||||||| ||||||    
T  9093616 aacagcttatagcttatacgaaaacaatttaactttattttatcttt 9093662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 415314 - 415286
Alignment:
Q  1 aacaacttatagcttatacgaaaacaatt 29  Q
    |||||||||||||||||||||||||||||    
T  415314 aacaacttatagcttatacgaaaacaatt 415286  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25885869 - 25885823
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    |||||||||||||||| |||||||||||| || ||||||| ||||||    
T  25885869 aacaacttatagcttacacgaaaacaatttaactttattttatcttt 25885823  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 30371158 - 30371112
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    |||||||||||||||||| ||||||||||  ||||||||| ||||||    
T  30371158 aacaacttatagcttatatgaaaacaatttgagtttattttatcttt 30371112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49888777 - 49888731
Alignment:
Q  1 aacaacttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    ||||||| ||||||||||||||||||||| || ||||||| ||||||    
T  49888777 aacaactaatagcttatacgaaaacaattaaactttattttatcttt 49888731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11218005 - 11218033
Alignment:
Q  1 aacaacttatagcttatacgaaaacaatt 29  Q
    |||||||||||||||||||||||||||||    
T  11218005 aacaacttatagcttatacgaaaacaatt 11218033  T

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Target: scaffold0475 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11815 - 11843
Alignment:
Q  1 aacaacttatagcttatacgaaaacaatt 29  Q
    |||||||||||||||||||||||||||||    
T  11815 aacaacttatagcttatacgaaaacaatt 11843  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 10367715 - 10367751
Alignment:
Q  5 acttatagcttatacgaaaacaattgaagtttattta 41  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  10367715 acttatagcttatatgaaaacaattgtagtttattta 10367751  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 25447310 - 25447350
Alignment:
Q  7 ttatagcttatacgaaaacaattgaagtttatttaatcttt 47  Q
    ||||||||||||| ||||||||| |||||||||| ||||||    
T  25447310 ttatagcttatacaaaaacaatttaagtttattttatcttt 25447350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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