View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16841_low_15 (Length: 262)

Name: NF16841_low_15
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16841_low_15
NF16841_low_15
[»] chr1 (4 HSPs)
chr1 (75-262)||(25672635-25672841)
chr1 (75-262)||(25677482-25677688)
chr1 (1-43)||(25672873-25672915)
chr1 (1-43)||(25677720-25677762)
[»] chr2 (14 HSPs)
chr2 (75-262)||(43009680-43009886)
chr2 (75-262)||(43011977-43012183)
chr2 (75-262)||(43014274-43014480)
chr2 (75-205)||(25199894-25200026)
chr2 (75-175)||(25204818-25204920)
chr2 (75-139)||(35073813-35073877)
chr2 (204-262)||(25199818-25199876)
chr2 (204-262)||(25204723-25204781)
chr2 (1-43)||(43011903-43011945)
chr2 (1-43)||(43014200-43014242)
chr2 (5-43)||(25200057-25200095)
chr2 (204-262)||(35073951-35074009)
chr2 (1-43)||(25204951-25204993)
chr2 (5-43)||(43009610-43009648)
[»] chr8 (2 HSPs)
chr8 (75-262)||(15091939-15092146)
chr8 (1-43)||(15092177-15092219)
[»] chr3 (6 HSPs)
chr3 (79-205)||(43678127-43678247)
chr3 (204-262)||(43679457-43679515)
chr3 (166-205)||(43679400-43679439)
chr3 (204-262)||(26304512-26304570)
chr3 (227-262)||(43678831-43678866)
chr3 (5-43)||(43678065-43678103)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 25672841 - 25672635
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgttggaagttat 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25672841 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgttggaagttat 25672742  T
Q  175 taggaagttacttggccagaagaagttat-------------------ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgca 255  Q
    |||||||||||||||||||||||||||||                   ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  25672741 taggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgca 25672642  T
Q  256 agtttac 262  Q
    |||||||    
T  25672641 agtttac 25672635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 25677688 - 25677482
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgttggaagttat 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25677688 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgtgggaagttat 25677589  T
Q  175 taggaagttacttggccagaagaagttat-------------------ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgca 255  Q
    |||||||||||||||||||||||||||||                   ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  25677588 taggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgca 25677489  T
Q  256 agtttac 262  Q
    |||||||    
T  25677488 agtttac 25677482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25672915 - 25672873
Alignment:
Q  1 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25672915 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 25672873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25677762 - 25677720
Alignment:
Q  1 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25677762 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 25677720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 43009680 - 43009886
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgttggaagttat 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43009680 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgtgggaagttat 43009779  T
Q  175 taggaagttacttggccagaagaagttat-------------------ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgca 255  Q
    |||||||||||||||||||||||||||||                   ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  43009780 taggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgca 43009879  T
Q  256 agtttac 262  Q
    |||||||    
T  43009880 agtttac 43009886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 43011977 - 43012183
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgttggaagttat 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43011977 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgtgggaagttat 43012076  T
Q  175 taggaagttacttggccagaagaagttat-------------------ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgca 255  Q
    |||||||||||||| ||||||||||||||                   ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  43012077 taggaagttacttgaccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgca 43012176  T
Q  256 agtttac 262  Q
    |||||||    
T  43012177 agtttac 43012183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 43014274 - 43014480
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgttggaagttat 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43014274 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgtgggaagttat 43014373  T
Q  175 taggaagttacttggccagaagaagttat-------------------ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgca 255  Q
    |||||||||||||| ||||||||||||||                   ||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  43014374 taggaagttacttgaccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgttaatctatgaaaatcgca 43014473  T
Q  256 agtttac 262  Q
    |||||||    
T  43014474 agtttac 43014480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 75 - 205
Target Start/End: Complemental strand, 25200026 - 25199894
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaag-ttgctgtttgttattttattt-ttatgttggaagtt 172  Q
    |||| |||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||| ||| |||||||| |||||||| ||||||||||||||    
T  25200026 ttagcgtgttagtttgaatttcaaatagttagttattgcctgtggttgtggattaaatttaagtttgatgtttgttgttttatttcttatgttggaagtt 25199927  T
Q  173 attaggaagttacttggccagaagaagttatct 205  Q
    |||||||||||||||||| ||||||||||||||    
T  25199926 attaggaagttacttggctagaagaagttatct 25199894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 25204920 - 25204818
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaag-ttgctgtttgttattttattt-ttatgttggaagtt 172  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||    
T  25204920 ttagtgtgttagtttaaatttcaaatagttagttattggatgtggttgtggattgtatttaagtttgttgtttgttgttttatttcttatgttggaagtt 25204821  T
Q  173 att 175  Q
    |||    
T  25204820 att 25204818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 35073813 - 35073877
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagtt 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35073813 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattatatttaagtt 35073877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 25199876 - 25199818
Alignment:
Q  204 ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgcaagtttac 262  Q
    |||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||    
T  25199876 ctctgatacatttgcagattgtatttccttttgttaatcaacgaaaatcgcaagtttac 25199818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 25204781 - 25204723
Alignment:
Q  204 ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgcaagtttac 262  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||| |||||||||||||    
T  25204781 ctctgatacatttgcagattgtatttccttttgttaatcaatgaatatcgcaagtttac 25204723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43011903 - 43011945
Alignment:
Q  1 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43011903 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43011945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43014200 - 43014242
Alignment:
Q  1 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  43014200 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43014242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 25200095 - 25200057
Alignment:
Q  5 ggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25200095 ggtaaacccgtcatttggagggtttatcaaaggagaaac 25200057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 35073951 - 35074009
Alignment:
Q  204 ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgcaagtttac 262  Q
    |||||||| ||||| ||| ||| ||||| ||||||||||||||||||||||||||||||    
T  35073951 ctctgatacatttgcagactgtgattccgtttgttaatcaatgaaaatcgcaagtttac 35074009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25204993 - 25204951
Alignment:
Q  1 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  25204993 gaagcgtaaacccgtcatttggagggtttatcaaagaagaaac 25204951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 43009610 - 43009648
Alignment:
Q  5 ggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  43009610 ggtaaatccgtcatttggagggtttatcaaaggagaaac 43009648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 15092146 - 15091939
Alignment:
Q  75 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaag-ttgctgtttgttattttatttttatgttggaagtta 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||    
T  15092146 ttagtgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagtttgctgtttgttgttttatttttaggttggaagtta 15092047  T
Q  174 ttaggaagttacttggccagaagaagttat-------------------ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgc 254  Q
    ||||||||||||||||||||||||||||||                   |||||||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  15092046 ttaggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgatacatttgcagactgtaattccttttgttaatcaatgaaaatcgc 15091947  T
Q  255 aagtttac 262  Q
    ||||||||    
T  15091946 aagtttac 15091939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15092219 - 15092177
Alignment:
Q  1 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15092219 gaagggtaaacccgtcatttggagggtttatcaaaggagaaac 15092177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 43678127 - 43678247
Alignment:
Q  79 tgtgttagtttgaatttcaaatagttagttattgggtgtggttgtggattgtatttaagttgctgtttgttattttatttttatgttggaagttattagg 178  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      ||||||| |||||||||||||||| ||||||| |||    
T  43678127 tgtgttagtttgaatttcaaatagttagttattaggtgtggttgtggattgtatttaa------gtttgttgttttatttttatgttgaaagttatcagg 43678220  T
Q  179 aagttacttggccagaagaagttatct 205  Q
    ||||||||||| |||||| || |||||    
T  43678221 aagttacttggtcagaaggagctatct 43678247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 43679457 - 43679515
Alignment:
Q  204 ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgcaagtttac 262  Q
    |||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||    
T  43679457 ctctgatacatttgcagactgtaattcattttgttaatcaatgaaaatcgcaagtttac 43679515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Original strand, 43679400 - 43679439
Alignment:
Q  166 ggaagttattaggaagttacttggccagaagaagttatct 205  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  43679400 ggaagttattaagaagttacttggccagaagaagttatct 43679439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 26304512 - 26304570
Alignment:
Q  204 ctctgatagatttgaagattgtaattccttttgttaatcaatgaaaatcgcaagtttac 262  Q
    |||||||| ||||| | |||||| ||||||||||  |||||||||||||||||||||||    
T  26304512 ctctgatacatttgcaaattgtatttccttttgtacatcaatgaaaatcgcaagtttac 26304570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 262
Target Start/End: Original strand, 43678831 - 43678866
Alignment:
Q  227 attccttttgttaatcaatgaaaatcgcaagtttac 262  Q
    |||||||||||||||||||||||||| |||||||||    
T  43678831 attccttttgttaatcaatgaaaatcacaagtttac 43678866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 43
Target Start/End: Original strand, 43678065 - 43678103
Alignment:
Q  5 ggtaaacccgtcatttggagggtttatcaaaggagaaac 43  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  43678065 ggtaaacctgtcatttggagagtttatcaaaggagaaac 43678103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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