View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16841_low_3 (Length: 457)
Name: NF16841_low_3
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16841_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 30437795 - 30437423
Alignment:
| Q |
18 |
tcttaattaattcatttctgttttatttagatgggtatgtcaagtgcactagacacattttgtggtcaagcatatggagctcaacggtatcatatggttg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30437795 |
tcttaattaattcatttctgttttatttagatgggtatgtcaagtgcactagacacattttgtggtcaagcatatggagctcaacagtatcatatggttg |
30437696 |
T |
|
| Q |
118 |
gaatatatacacaaagggcaatgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttgataattttacatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30437695 |
gaatatatacacaaagggcaatgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttgataattttacatca |
30437596 |
T |
|
| Q |
218 |
agacaaaactattgcaacacaagctcaactgtttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattattaaattcctacag |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30437595 |
agacaaaactattgcaacacaagctcaactatttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattattaaattcctacag |
30437496 |
T |
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| Q |
318 |
acacaaaacattgtttttcctatggtgcttgctaatggattcattagcttaatacatgttattttatgctggg |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30437495 |
acacaaaacattgtttttcctatggtgcttgctaatggattcattagcttaatacatgttattttatgctggg |
30437423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 39 - 439
Target Start/End: Complemental strand, 30420268 - 30419868
Alignment:
| Q |
39 |
tttatttagatgggtatgtcaagtgcactagacacattttgtggtcaagcatatggagctcaacggtatcatatggttggaatatatacacaaagggcaa |
138 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |
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| T |
30420268 |
tttatttagatgggtatgtcaagtgcattagacacattttgtgggcaagcatatggagcacaacaatatcatatggttggaatatatacacaaagagcaa |
30420169 |
T |
|
| Q |
139 |
tgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttgataattttacatcaagacaaaactattgcaacaca |
238 |
Q |
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||||||| |||||| ||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
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| T |
30420168 |
tgttggcaaccacccttgttagtatacctttatcatttattttggcatacttaaaaccgattttgataattttacgtcaagacaaaactattgcagcaca |
30420069 |
T |
|
| Q |
239 |
agctcaactgtttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattattaaattcctacagacacaaaacattgtttttcct |
338 |
Q |
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||||||||| ||||||||||| ||||||||||| ||||| ||||||| |||||| | ||| || ||||||||||||| |||||||| || ||||||| |
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| T |
30420068 |
agctcaactatttgctcgttactcaattccaagcctttcagccaatgcccttcttaggtgccttgttaaattcctacaaacacaaaatataatttttcca |
30419969 |
T |
|
| Q |
339 |
atggtgcttgctaatggattcattagcttaatacatgttattttatgctgggctttggttataaaatttggacttggtattaaaggagctgctattgcaa |
438 |
Q |
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|||||||||||||||||| ||| |||||| ||||||||| || |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30419968 |
atggtgcttgctaatggagtcactagcttgatacatgtttttctatgttgggctttggttataaaatttggatttggtattaaaggagctgctattgcaa |
30419869 |
T |
|
| Q |
439 |
t |
439 |
Q |
| |
|
| |
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|
| T |
30419868 |
t |
30419868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 39 - 442
Target Start/End: Complemental strand, 30381474 - 30381071
Alignment:
| Q |
39 |
tttatttagatgggtatgtcaagtgcactagacacattttgtggtcaagcatatggagctcaacggtatcatatggttggaatatatacacaaagggcaa |
138 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||| ||||| |||||||| || | |
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| T |
30381474 |
tttatttagatgggtgtgtcaagtgcactagacacattttgtggtcaagcatatggagcaaagcaatatcatatggttggcatatacacacaaagagcca |
30381375 |
T |
|
| Q |
139 |
tgttggctaccaccattgttagtatacccttatcatttatttgggcatacttaaaacccattttgataattttacatcaagacaaaactattgcaacaca |
238 |
Q |
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|
|||||| ||||||| |||||||||||||||| ||| |||| |||||||||||| |||| |||||| | ||||||||||||||| ||||||||||| |||| |
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| T |
30381374 |
tgttggttaccacccttgttagtatacccttgtcaattatatgggcatacttagaacctattttggtgattttacatcaagaccaaactattgcagcaca |
30381275 |
T |
|
| Q |
239 |
agctcaactgtttgctcgttattcaattccaagtctttctgccaatggtcttcttcgatgcattattaaattcctacagacacaaaacattgtttttcct |
338 |
Q |
| |
|
||||||| | ||||||||||| |||||||| || ||| |||||||||| |||||| | |||||| |||||||| | || || |||||||| |||||||| |
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| T |
30381274 |
agctcaattatttgctcgttactcaattcctagccttgctgccaatggccttcttaggtgcattgttaaattcttgcaaactcaaaacatagtttttccc |
30381175 |
T |
|
| Q |
339 |
atggtgcttgctaatggattcattagcttaatacatgttattttatgctgggctttggttataaaatttggacttggtattaaaggagctgctattgcaa |
438 |
Q |
| |
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|||||| | ||||||||| ||| || |||| ||||||| || |||| ||| | ||||||||||| || || ||||||| |||||||||||||||||| |
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| T |
30381174 |
atggtgttggctaatggaatcactaccttagtacatgtccttctatgttggacattggttataaatttagggtttggtatcaaaggagctgctattgcac |
30381075 |
T |
|
| Q |
439 |
tttg |
442 |
Q |
| |
|
|||| |
|
|
| T |
30381074 |
tttg |
30381071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 30435227 - 30435171
Alignment:
| Q |
386 |
ctgggctttggttataaaatttggacttggtattaaaggagctgctattgcaatttg |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30435227 |
ctgggctttggttataaaatttggacttggtattaaaggagctgctattgcaatttg |
30435171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 122
Target Start/End: Complemental strand, 30471858 - 30471797
Alignment:
| Q |
61 |
gtgcactagacacattttgtggtcaagcatatggagctcaacggtatcatatggttggaata |
122 |
Q |
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|||||||||| ||||||||||||||| |||||||||| ||| || |||||||| |||||| |
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| T |
30471858 |
gtgcactagaaacattttgtggtcaatcatatggagcacaaaaataccatatggtgggaata |
30471797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 20540225 - 20540319
Alignment:
| Q |
39 |
tttatttagatgggtatgtcaagtgcactagacacattttgtggtcaagcatatggagctcaacggtatcatatggttggaatatatacacaaag |
133 |
Q |
| |
|
||||||||||| | |||||||||| || | | ||||||||||||||||||||||||||| || | ||||||||| |||| ||||| ||| |||| |
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|
| T |
20540225 |
tttatttagattgatatgtcaagtacatttgccacattttgtggtcaagcatatggagcacaccaatatcatatgattggcatatacacaaaaag |
20540319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 122
Target Start/End: Original strand, 45024889 - 45024951
Alignment:
| Q |
60 |
agtgcactagacacattttgtggtcaagcatatggagctcaacggtatcatatggttggaata |
122 |
Q |
| |
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|||||||| |||||||||||||||||| || ||||||| ||| ||| |||||| |||||||| |
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|
| T |
45024889 |
agtgcactggacacattttgtggtcaatcaaatggagcagaacagtaccatatgcttggaata |
45024951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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