View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16841_low_7 (Length: 365)

Name: NF16841_low_7
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16841_low_7
NF16841_low_7
[»] chr2 (15 HSPs)
chr2 (261-352)||(23666305-23666395)
chr2 (1-48)||(33635225-33635272)
chr2 (1-45)||(15858830-15858874)
chr2 (1-45)||(21539649-21539693)
chr2 (1-47)||(4033895-4033941)
chr2 (1-47)||(35832302-35832348)
chr2 (1-45)||(792576-792620)
chr2 (1-45)||(10979084-10979128)
chr2 (1-45)||(29514694-29514738)
chr2 (1-45)||(38549863-38549907)
chr2 (1-44)||(10478068-10478111)
chr2 (1-44)||(15068639-15068682)
chr2 (1-44)||(29514239-29514282)
chr2 (1-45)||(4091902-4091946)
chr2 (1-45)||(28492412-28492456)
[»] chr4 (16 HSPs)
chr4 (1-48)||(50768331-50768378)
chr4 (1-45)||(27750535-27750579)
chr4 (1-45)||(32012514-32012558)
chr4 (1-45)||(38940758-38940802)
chr4 (1-45)||(29180599-29180643)
chr4 (1-45)||(39970176-39970220)
chr4 (1-45)||(52712952-52712996)
chr4 (1-45)||(55937890-55937934)
chr4 (1-44)||(37788341-37788384)
chr4 (1-47)||(47806785-47806831)
chr4 (1-43)||(49901917-49901959)
chr4 (1-45)||(1619918-1619962)
chr4 (1-45)||(3043354-3043398)
chr4 (1-45)||(10591689-10591733)
chr4 (1-45)||(30776671-30776715)
chr4 (1-45)||(30777376-30777420)
[»] chr7 (21 HSPs)
chr7 (1-47)||(3157325-3157371)
chr7 (1-47)||(19933234-19933280)
chr7 (1-47)||(19964373-19964419)
chr7 (1-45)||(41815872-41815916)
chr7 (1-45)||(44600337-44600381)
chr7 (1-45)||(18206487-18206531)
chr7 (1-45)||(36576309-36576353)
chr7 (1-45)||(40560273-40560317)
chr7 (1-45)||(41890439-41890483)
chr7 (1-45)||(43108085-43108129)
chr7 (1-45)||(45598795-45598839)
chr7 (1-44)||(41889063-41889106)
chr7 (1-44)||(47383298-47383341)
chr7 (1-47)||(34808108-34808154)
chr7 (1-45)||(21654300-21654344)
chr7 (1-41)||(25944456-25944496)
chr7 (1-45)||(32491285-32491329)
chr7 (1-45)||(35181083-35181127)
chr7 (1-45)||(42617562-42617606)
chr7 (1-45)||(48938066-48938110)
chr7 (1-45)||(48943092-48943136)
[»] chr8 (15 HSPs)
chr8 (1-45)||(11043952-11043996)
chr8 (1-45)||(24612702-24612746)
chr8 (1-45)||(27752481-27752525)
chr8 (1-45)||(36537953-36537997)
chr8 (1-52)||(40487895-40487946)
chr8 (1-42)||(31133806-31133847)
chr8 (1-45)||(25321808-25321852)
chr8 (1-45)||(33851245-33851289)
chr8 (1-45)||(35259952-35259996)
chr8 (1-44)||(3099848-3099891)
chr8 (1-41)||(8711754-8711794)
chr8 (1-45)||(11992622-11992666)
chr8 (1-45)||(37597965-37598009)
chr8 (1-41)||(43216597-43216637)
chr8 (1-45)||(44052515-44052559)
[»] chr6 (7 HSPs)
chr6 (1-45)||(12278598-12278642)
chr6 (5-45)||(31887347-31887387)
chr6 (1-44)||(30766339-30766382)
chr6 (1-47)||(33756146-33756192)
chr6 (1-45)||(373991-374035)
chr6 (1-45)||(10227804-10227848)
chr6 (1-45)||(30949027-30949071)
[»] chr5 (12 HSPs)
chr5 (1-45)||(35462939-35462983)
chr5 (1-45)||(16286304-16286348)
chr5 (1-45)||(24439466-24439510)
chr5 (1-45)||(37066444-37066488)
chr5 (1-45)||(42364933-42364977)
chr5 (1-44)||(20914754-20914797)
chr5 (1-44)||(25962673-25962716)
chr5 (1-42)||(39505473-39505514)
chr5 (1-45)||(8146234-8146278)
chr5 (1-41)||(8225343-8225383)
chr5 (1-45)||(13146623-13146667)
chr5 (1-45)||(31690841-31690885)
[»] chr3 (18 HSPs)
chr3 (1-45)||(34022514-34022558)
chr3 (1-45)||(45347851-45347895)
chr3 (1-45)||(46819942-46819986)
chr3 (1-45)||(55400631-55400675)
chr3 (1-44)||(46580430-46580473)
chr3 (1-45)||(1335003-1335047)
chr3 (1-45)||(21654137-21654181)
chr3 (1-45)||(23513460-23513504)
chr3 (1-45)||(26641295-26641339)
chr3 (1-45)||(32322422-32322466)
chr3 (1-41)||(33974759-33974799)
chr3 (1-44)||(31126106-31126149)
chr3 (5-45)||(10114805-10114845)
chr3 (1-45)||(16739338-16739382)
chr3 (1-41)||(37042586-37042626)
chr3 (1-45)||(43575851-43575895)
chr3 (1-45)||(51255081-51255125)
chr3 (1-45)||(53020075-53020119)
[»] chr1 (22 HSPs)
chr1 (1-45)||(29488640-29488684)
chr1 (1-45)||(38942665-38942709)
chr1 (1-45)||(40935837-40935881)
chr1 (1-45)||(40960698-40960742)
chr1 (1-45)||(49924311-49924355)
chr1 (1-44)||(26907313-26907356)
chr1 (1-45)||(31970532-31970576)
chr1 (1-45)||(40219949-40219993)
chr1 (1-45)||(44875071-44875115)
chr1 (1-45)||(46949213-46949257)
chr1 (1-44)||(9127936-9127979)
chr1 (1-44)||(15285697-15285740)
chr1 (1-44)||(18852116-18852159)
chr1 (1-44)||(26479632-26479675)
chr1 (1-44)||(39026470-39026512)
chr1 (1-44)||(43656260-43656303)
chr1 (1-44)||(45358100-45358143)
chr1 (1-43)||(23874051-23874093)
chr1 (1-42)||(3076175-3076215)
chr1 (1-42)||(44149073-44149114)
chr1 (1-45)||(6848528-6848572)
chr1 (1-45)||(18036437-18036481)
[»] scaffold0495 (1 HSPs)
scaffold0495 (1-45)||(4523-4567)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 261 - 352
Target Start/End: Original strand, 23666305 - 23666395
Alignment:
Q  261 ctcttaaagaattaaggatatttataacacatgcataaaaatagaaacaaaatccattaattattaacacaaagatttagatggttagaagt 352  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23666305 ctcttgaagaattaaggatatttataacacatgcataaaaatagaaacaaaatccattaattatt-acacaaagatttagatggttagaagt 23666395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 33635272 - 33635225
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaat 48  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  33635272 atattttgagacaaagaaaatgagatttttttgcttatattttagaat 33635225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 15858830 - 15858874
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  15858830 atattttgagacaaagaatatgaaatttttttgcttatattttag 15858874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21539693 - 21539649
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  21539693 atattttgagacaaagaaaatgagatttttttgcttatattttag 21539649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 4033895 - 4033941
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||    
T  4033895 atattttgagacaaagaaaataagatttttttgcttatattttagaa 4033941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 35832348 - 35832302
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    |||||||||||||||||| || ||||| |||||||||||||||||||    
T  35832348 atattttgagacaaagaatataaaatttttttgcttatattttagaa 35832302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 792576 - 792620
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  792576 atattttgagacaaagaatatgagatttttttgcttatattttag 792620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10979128 - 10979084
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||| ||||||| ||| |||||||||||||||||    
T  10979128 atattttgagacaaaaaaaatgagatttttttgcttatattttag 10979084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29514694 - 29514738
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  29514694 atattttgagacaaagaatatgagatttttttgcttatattttag 29514738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38549863 - 38549907
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  38549863 atattttgagacaaagaaaatgagatttttttacttatattttag 38549907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10478111 - 10478068
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||||    
T  10478111 atattttgagacaaaaaaaatgagatttttttgcttatatttta 10478068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15068682 - 15068639
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||||||||| || ||||||||||| ||||    
T  15068682 atattttgagacaaagaaaatgaattttttttgcttataattta 15068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29514239 - 29514282
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  29514239 atattttgagacaaagaatatgagatttttttgcttatatttta 29514282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4091946 - 4091902
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| | || ||||||||||||    
T  4091946 atattttgagacaaagaaaatgagattttattacttatattttag 4091902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28492456 - 28492412
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| ||||||||||||| | ||| |||||||||||||||||    
T  28492456 atattttaagacaaagaaaataagatttttttgcttatattttag 28492412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 50768378 - 50768331
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaat 48  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  50768378 atattttgagacaaagaaaatgagatttttttgcttatattttagaat 50768331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 27750535 - 27750579
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||    
T  27750535 atattttgagataaagaaaatgaaatttttttgcttatattttag 27750579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32012514 - 32012558
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  32012514 atattttgagacaaagaaaatgagatttttttgcttatattttag 32012558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38940802 - 38940758
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||||||  |||||||||||||||||    
T  38940802 atattttgagacaaagaaaatgaaatatttttgcttatattttag 38940758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29180599 - 29180643
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  29180599 atattttgagacaaagaatatgagatttttttgcttatattttag 29180643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 39970176 - 39970220
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  39970176 atattttgagacaaagaatatgagatttttttgcttatattttag 39970220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 52712996 - 52712952
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  52712996 atattttgagacaaagaatatgagatttttttgcttatattttag 52712952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 55937890 - 55937934
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||||    
T  55937890 atattttaagacaaagaaaatgagatttttttgcttatattttag 55937934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37788384 - 37788341
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||||| ||||||||||| ||| ||||||||||||||||    
T  37788384 atattttgagataaagaaaatgatatttttttgcttatatttta 37788341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 47806831 - 47806785
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    |||||||||||||||||| ||||| || |||| ||||||||||||||    
T  47806831 atattttgagacaaagaatatgaattttttttacttatattttagaa 47806785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 49901959 - 49901917
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttt 43  Q
    |||||||||||||||||| |||| ||| |||||||||||||||    
T  49901959 atattttgagacaaagaatatgagatttttttgcttatatttt 49901917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1619962 - 1619918
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||| ||||||||||||    
T  1619962 atattttgagacaaagaatatgagatttttttacttatattttag 1619918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 3043354 - 3043398
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| | | |||||||||||||||||    
T  3043354 atattttgagacaaagaatatgataattttttgcttatattttag 3043398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 10591689 - 10591733
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||| || |||| ||| |||||||||||||||||    
T  10591689 atattttgagacaaaaaatatgagatttttttgcttatattttag 10591733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30776671 - 30776715
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||| || |||| ||| |||||||||||||||||    
T  30776671 atattttgagacaaataatatgagatttttttgcttatattttag 30776715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30777420 - 30777376
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||| || |||| ||| |||||||||||||||||    
T  30777420 atattttgagacaaataatatgagatttttttgcttatattttag 30777376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3157371 - 3157325
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    |||||||||||||| |||||||||||| |||||||||||||||||||    
T  3157371 atattttgagacaaggaaaatgaaatttttttgcttatattttagaa 3157325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19933234 - 19933280
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19933234 atattttgagataaagaaaatgaaatttttttgcttatattttagaa 19933280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 19964373 - 19964419
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||    
T  19964373 atattttgagataaagaaaatgaaatttttttgcttatattttagaa 19964419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41815872 - 41815916
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  41815872 atattttgagacaaagaaaatgagatttttttgcttatattttag 41815916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44600381 - 44600337
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  44600381 atattttgagacaaagaaaatgagatttttttgcttatattttag 44600337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 18206487 - 18206531
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  18206487 atattttgagacaaagaaaatgatatttttttacttatattttag 18206531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36576353 - 36576309
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||| ||||||||||||    
T  36576353 atattttgagacaaagaaaatgagatttttttccttatattttag 36576309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40560317 - 40560273
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||    
T  40560317 atattttgagacaaagaaaataagatttttttgcttatattttag 40560273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41890439 - 41890483
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  41890439 atattttgagacaaagaatatgagatttttttgcttatattttag 41890483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43108085 - 43108129
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  43108085 atattttgagacaaagaatatgagatttttttgcttatattttag 43108129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45598839 - 45598795
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  45598839 atattttgagacaaagaacatgagatttttttgcttatattttag 45598795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41889106 - 41889063
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  41889106 atattttgagacaaagaatatgatatttttttgcttatatttta 41889063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 47383341 - 47383298
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||    
T  47383341 atattttgagacaaagaaagtgatatttttttgcttatatttta 47383298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 34808154 - 34808108
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    ||||||| |||||||||| |||| ||| |||||||||||||||||||    
T  34808154 atattttaagacaaagaatatgagatttttttgcttatattttagaa 34808108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21654300 - 21654344
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||  |||| ||| |||||||||||||||||    
T  21654300 atattttgagacaaagattatgagatttttttgcttatattttag 21654344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25944496 - 25944456
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatt 41  Q
    |||||||| ||||||||||||||| || |||||||||||||    
T  25944496 atattttgggacaaagaaaatgaattttttttgcttatatt 25944456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32491285 - 32491329
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| ||||||||||||| | ||| |||||||||||||||||    
T  32491285 atattttcagacaaagaaaataagatttttttgcttatattttag 32491329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35181127 - 35181083
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||| |||||||||||| |||| ||| |||||||||||||||||    
T  35181127 atattctgagacaaagaatatgagatttttttgcttatattttag 35181083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42617606 - 42617562
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||| |||||| |||| ||| |||||||||||||||||    
T  42617606 atattttgagaaaaagaatatgagatttttttgcttatattttag 42617562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48938066 - 48938110
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| |||||||||| |||||||| |||| ||||||||||||    
T  48938066 atattttaagacaaagaatatgaaatttttttacttatattttag 48938110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48943092 - 48943136
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| |||||||||| |||||||| |||| ||||||||||||    
T  48943092 atattttaagacaaagaatatgaaatttttttacttatattttag 48943136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11043996 - 11043952
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  11043996 atattttgagacaaagaaaatgagatttttttgcttatattttag 11043952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24612702 - 24612746
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  24612702 atattttgagacaaagaaaatgagatttttttgcttatattttag 24612746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27752525 - 27752481
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  27752525 atattttgagacaaagaaaatgatatttttttgcttatattttag 27752481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36537997 - 36537953
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  36537997 atattttgagacaaagaaaatgagatttttttgcttatattttag 36537953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 40487895 - 40487946
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaatagag 52  Q
    |||||||||||| |||||||||| ||| ||||||||||||||||||| ||||    
T  40487895 atattttgagacgaagaaaatgagatttttttgcttatattttagaacagag 40487946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31133806 - 31133847
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattt 42  Q
    |||||||||||||||||| |||||||| ||||||||||||||    
T  31133806 atattttgagacaaagaatatgaaatttttttgcttatattt 31133847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25321808 - 25321852
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||    
T  25321808 atattttgagacaaagaaaataagatttttttgcttatattttag 25321852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33851245 - 33851289
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||    
T  33851245 atattttgaggcaaagaaaatgagatttttttgcttatattttag 33851289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35259996 - 35259952
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  35259996 atattttgagacaaagaatatgagatttttttgcttatattttag 35259952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3099891 - 3099848
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||| ||||||||||||| ||| ||||||||||||||||    
T  3099891 atattttgaaacaaagaaaatgagatttttttgcttatatttta 3099848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8711794 - 8711754
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatt 41  Q
    ||||||||||||||| |||||||| || |||||||||||||    
T  8711794 atattttgagacaaataaaatgaattttttttgcttatatt 8711754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11992666 - 11992622
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| | |||||||| |||||||| |||||||||||||||||    
T  11992666 atattttaatacaaagaatatgaaatttttttgcttatattttag 11992622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 37598009 - 37597965
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| | | |||||||||||||||||    
T  37598009 atattttgagacaaagaatatgagaatgttttgcttatattttag 37597965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43216597 - 43216637
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatt 41  Q
    |||||||| ||||||||||||||| || |||||||||||||    
T  43216597 atattttgggacaaagaaaatgaattttttttgcttatatt 43216637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44052559 - 44052515
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||| ||||||||||| ||| |||||||||||| ||||    
T  44052559 atattttgagataaagaaaatgagatttttttgcttatatcttag 44052515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12278642 - 12278598
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  12278642 atattttgagacaaagaatatgaaatttttttgcttatattttag 12278598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 31887347 - 31887387
Alignment:
Q  5 tttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||| ||| |||||||||||||||||    
T  31887347 tttgagacaaagaaaatgatatttttttgcttatattttag 31887387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30766382 - 30766339
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  30766382 atattttgagacaaagaatatgagatttttttgcttatatttta 30766339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 33756192 - 33756146
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttagaa 47  Q
    ||||||||||| |||||| |||| ||| |||||||||||||||||||    
T  33756192 atattttgagataaagaatatgagatttttttgcttatattttagaa 33756146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 374035 - 373991
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||| ||||||  ||||||| |||||||||||||||||    
T  374035 atattttgagataaagaatttgaaatttttttgcttatattttag 373991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10227848 - 10227804
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| | | |||||||||||||||||    
T  10227848 atattttgagacaaagaatatgagaattttttgcttatattttag 10227804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30949071 - 30949027
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||| | ||| || ||||||||||||||    
T  30949071 atattttgagacaaagaaaataagatttttgtgcttatattttag 30949027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35462939 - 35462983
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  35462939 atattttgagacaaagaaaatgagatttttttgcttatattttag 35462983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16286304 - 16286348
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||    
T  16286304 atattttgagacaaagaaaatgagatttgtttgcttatattttag 16286348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 24439510 - 24439466
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||| |||||||||||||||||| ||||||||||| |||||    
T  24439510 atattttgcgacaaagaaaatgaaatttttttgcttataatttag 24439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37066444 - 37066488
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| |||||||||| |||||||| |||||||||||||||||    
T  37066444 atattttaagacaaagaatatgaaatttttttgcttatattttag 37066488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42364977 - 42364933
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  42364977 atattttgagacaaagaatatgagattcttttgcttatattttag 42364933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 20914797 - 20914754
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||| |||||||||||||||| || ||||||||||||||||    
T  20914797 atattttaagacaaagaaaatgaattttttttgcttatatttta 20914754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25962673 - 25962716
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||    
T  25962673 atattttgagacaaagaaaatgatatatttttgcttatatttta 25962716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39505473 - 39505514
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattt 42  Q
    |||||||| ||||||||||||||| || ||||||||||||||    
T  39505473 atattttgggacaaagaaaatgaattttttttgcttatattt 39505514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8146234 - 8146278
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||| |||||||||| |||| ||| |||||||||||||||||    
T  8146234 atattttaagacaaagaatatgagatttttttgcttatattttag 8146278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8225383 - 8225343
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatt 41  Q
    |||||||| ||||||||||||||| || |||||||||||||    
T  8225383 atattttgggacaaagaaaatgaattttttttgcttatatt 8225343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13146667 - 13146623
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||| |||||||| |||| ||| |||||||||||||||||    
T  13146667 atattttgatacaaagaatatgagatttttttgcttatattttag 13146623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31690841 - 31690885
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||| || |||| ||| |||||||||||||||||    
T  31690841 atattttgagacaaaaaatatgagatttttttgcttatattttag 31690885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34022558 - 34022514
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  34022558 atattttgagacaaagaaaatgagatttttttgcttatattttag 34022514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 45347851 - 45347895
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  45347851 atattttgagacaaagaaaatgagatttttttgcttatattttag 45347895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46819986 - 46819942
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  46819986 atattttgagacaaagaaaatgagatttttttgcttatattttag 46819942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 55400675 - 55400631
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  55400675 atattttgagacaaagaatatgaaatttttttgcttatattttag 55400631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46580473 - 46580430
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||||||| ||||||||||||||||    
T  46580473 atattttgagacaaagaatatgaaatttttttgcttatatttta 46580430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1335047 - 1335003
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  1335047 atattttgagacaaagaatatgagatttttttgcttatattttag 1335003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 21654181 - 21654137
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  21654181 atattttgagacaaagaatatgagatttttttgcttatattttag 21654137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 23513504 - 23513460
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  23513504 atattttgagacaaagaatatgagatttttttgcttatattttag 23513460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 26641295 - 26641339
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  26641295 atattttgagacaaagaatatgagatttttttgcttatattttag 26641339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 32322422 - 32322466
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||    
T  32322422 atattttgagacaaagaaaatgagatttatttgcttatattttag 32322466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33974759 - 33974799
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatt 41  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  33974759 atattttgagacaaagaaaatgagatttttttgcttatatt 33974799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31126149 - 31126106
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  31126149 atattttgagacaaagaatatgagatttttttgcttatatttta 31126106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 10114845 - 10114805
Alignment:
Q  5 tttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||||| || ||||||||||| |||||    
T  10114845 tttgagacaaagaaaatgaattttttttgcttataatttag 10114805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16739338 - 16739382
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||| | ||| |||| ||||||||||||    
T  16739338 atattttgagacaaagaaaatcagatttttttacttatattttag 16739382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37042586 - 37042626
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatt 41  Q
    |||||||| ||||||||||||||| || |||||||||||||    
T  37042586 atattttgggacaaagaaaatgaatttcttttgcttatatt 37042626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 43575895 - 43575851
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||| |||| || ||| |||||||||||||||||    
T  43575895 atattttgagacaaaaaaaaagagatttttttgcttatattttag 43575851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 51255125 - 51255081
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||| | ||| |||| ||||||||||||    
T  51255125 atattttgagacaaagaaaataagatttttttacttatattttag 51255081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53020119 - 53020075
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||| || |||| ||| |||||||||||||||||    
T  53020119 atattttgagacaaaaaatatgagatttttttgcttatattttag 53020075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29488684 - 29488640
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  29488684 atattttgagacaaagaaaatgagatttttttgcttatattttag 29488640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 38942665 - 38942709
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  38942665 atattttgagacaaagaaaatgagatttttttgcttatattttag 38942709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40935837 - 40935881
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  40935837 atattttgagacaaagaaaatgagatttttttgcttatattttag 40935881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40960698 - 40960742
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  40960698 atattttgagacaaagaaaatgagatttttttgcttatattttag 40960742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49924355 - 49924311
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||    
T  49924355 atattttgagacaaagaaaatgagatttttttgcttatattttag 49924311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 26907313 - 26907356
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||    
T  26907313 atattttgagacaaagaaaatgagatttttttgcttatatttta 26907356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31970532 - 31970576
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||    
T  31970532 atattttgatacaaagaaaatgagatttttttgcttatattttag 31970576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 40219993 - 40219949
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  40219993 atattttgagacaaagaatatgagatttttttgcttatattttag 40219949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 44875115 - 44875071
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  44875115 atattttgagacaaagaatatgagatttttttgcttatattttag 44875071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46949257 - 46949213
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||    
T  46949257 atattttgagacaaagaatatgagatttttttgcttatattttag 46949213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9127979 - 9127936
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  9127979 atattttgagacaaagaatatgagatttttttgcttatatttta 9127936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15285740 - 15285697
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  15285740 atattttgagacaaagaatatgagatttttttgcttatatttta 15285697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18852159 - 18852116
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  18852159 atattttgagacaaagaatatgagatttttttgcttatatttta 18852116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26479675 - 26479632
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  26479675 atattttgagacaaagaatatgagatttttttgcttatatttta 26479632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 39026470 - 39026512
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  39026470 atattttgagacaaa-aaaatgaaatttttttgcttatatttta 39026512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 43656260 - 43656303
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||    
T  43656260 atattttgagacaaagaatatgagatttttttgcttatatttta 43656303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 45358100 - 45358143
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttta 44  Q
    ||||||||||||||||||||| | ||| ||||||||||||||||    
T  45358100 atattttgagacaaagaaaattagatttttttgcttatatttta 45358143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23874051 - 23874093
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatatttt 43  Q
    |||||||||||||||||| |||| ||| |||||||||||||||    
T  23874051 atattttgagacaaagaatatgagatttttttgcttatatttt 23874093  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3076215 - 3076175
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattt 42  Q
    |||||||||||||||||||||| |||| ||||||||||||||    
T  3076215 atattttgagacaaagaaaatg-aatttttttgcttatattt 3076175  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44149073 - 44149114
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattt 42  Q
    |||||||| |||||||||||||| ||| ||||||||||||||    
T  44149073 atattttgggacaaagaaaatgagatttttttgcttatattt 44149114  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6848528 - 6848572
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| | | |||||||||||||||||    
T  6848528 atattttgagacaaagaatatgataattttttgcttatattttag 6848572  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18036481 - 18036437
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    ||||||||||||||||||||||| ||  ||||| |||||||||||    
T  18036481 atattttgagacaaagaaaatgagatatttttgtttatattttag 18036437  T

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Target: scaffold0495 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4567 - 4523
Alignment:
Q  1 atattttgagacaaagaaaatgaaattattttgcttatattttag 45  Q
    |||||||||||||||||| |||| | | |||||||||||||||||    
T  4567 atattttgagacaaagaatatgagaattttttgcttatattttag 4523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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