View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16841_low_8 (Length: 343)
Name: NF16841_low_8
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16841_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 46 - 335
Target Start/End: Complemental strand, 34525552 - 34525260
Alignment:
| Q |
46 |
agttttgtatttcatagttgataactctttttataacatat--tttgacaattgatgttcaaaattgtttcttcaattctaaacttctaatgtgattaat |
143 |
Q |
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| T |
34525552 |
agttttgtatttcatagttgataactctttttataacatatattttgacaattgatgttcaaaattgtttcttcaattctaaacttctaatgtgattaat |
34525453 |
T |
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| Q |
144 |
ttggtttaggttccattcccggtgtcagttttgaacagatgaaattgcaaatcaagctaggggttcctcgttctctccagaaatctctggatattgagaa |
243 |
Q |
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| T |
34525452 |
ttggtttaggttccattcctggtgtcagttttgaacagatgaaattgcaaatcaagctaggggttcctcgttctctccagaaatctctggatattgagaa |
34525353 |
T |
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| Q |
244 |
agtcaagtctgtatttccctagtgagtactctcgcatcattggaaactagttccttttttcatttccattatg-ttttatttgtgtgatgatg |
335 |
Q |
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| T |
34525352 |
agtcaagtctgtatttccctagtgagtactctcgcatcattggaaactagttccttttttcatttccattatgtttttatttgtgtgatgatg |
34525260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 34521933 - 34521707
Alignment:
| Q |
48 |
ttttgtatttcatagttgataactctttttataaca--tattttgacaattgatgttcaaaattgtttcttcaattctaaacttctaatgtgattaattt |
145 |
Q |
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||||||||||||||||||||||||||||||| | || |||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||| ||||| |
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| T |
34521933 |
ttttgtatttcatagttgataactctttttaaaccagatattttgacaattgttgttcaaaattgtatcttcaattctaaatttctaatgagatgaattt |
34521834 |
T |
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| Q |
146 |
ggtttaggttccattcccggtgtcagttttgaacagatgaaattgcaaatcaagctaggggttcctcgttctctccagaaatctctggatattgagaaag |
245 |
Q |
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| T |
34521833 |
ggtttaggttccattcctggtgtcagttttggtcagatgaaattgcagatcaaactaggggttcctcattctctccaacaagctctggatattgagaaag |
34521734 |
T |
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| Q |
246 |
tcaagtctgtatttccctagtgagtac |
272 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
34521733 |
tcaagtctgtatttccgtagtgagtac |
34521707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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