View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16841_low_9 (Length: 342)
Name: NF16841_low_9
Description: NF16841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16841_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 19582931 - 19582603
Alignment:
| Q |
1 |
atcaccccaatactcttcaacacagccacaaccatcacctcaagactctccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19582931 |
atcaccccaatactcttcaacacagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaag |
19582832 |
T |
|
| Q |
101 |
cgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatcagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
19582831 |
cgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatcagacc |
19582732 |
T |
|
| Q |
201 |
ctctaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatac |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19582731 |
ctttaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatac |
19582632 |
T |
|
| Q |
301 |
attagaatcatcagcaagtaataatccct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
19582631 |
attagaatcatcagcaagtaataatccct |
19582603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 19590654 - 19590982
Alignment:
| Q |
1 |
atcaccccaatactcttcaacacagccacaaccatcacctcaagactctccactaaagcgaaaacatccactacaagatcctcagccatcatcaccaaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19590654 |
atcaccccaatactcttcaacacagccacaaccatcacctgaaaactctccactaaagcgaaaacatccactccaagatcctcagccatcatcaccaaag |
19590753 |
T |
|
| Q |
101 |
cgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacgtttcatcgagctcatcagatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
19590754 |
cgacatctttcaatccaagaaccaccgccaggaagttcacagtcacaaggacaaatcatcagcatcaccgccgcatacatttcatcgagctcatcagacc |
19590853 |
T |
|
| Q |
201 |
ctctaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatac |
300 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19590854 |
ctttaccggtctcatcagacaattcattgaactcctcagacccttcacccgtcgcgtcatcagacccttcacccgtctcatcgggatctccaccggatac |
19590953 |
T |
|
| Q |
301 |
attagaatcatcagcaagtaataatccct |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
19590954 |
attagaatcatcagcaagtaataatccct |
19590982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 19586794 - 19586863
Alignment:
| Q |
258 |
catcagacccttcacccgtctcatcgggatctccaccggatacattagaatcatcagcaagtaataatcc |
327 |
Q |
| |
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||||||| ||||||||||||||||| || |||||||||||| |||||||||| | |||| |||||||| |
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|
| T |
19586794 |
catcagaaccttcacccgtctcatcaggctctccaccggatttattagaatcaaccgcaacaaataatcc |
19586863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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