View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16842_low_3 (Length: 243)
Name: NF16842_low_3
Description: NF16842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16842_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 43154970 - 43155197
Alignment:
| Q |
11 |
atcatcacaaagaaaagtttaagagagcgaaagacgagttataaagagacgtgagtagtagaataagacaggggacaatgagaaatgagaaatgaagagg |
110 |
Q |
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| T |
43154970 |
atcattacaaagaaaagtttaagagagcgaaagacgagttataaagagacgtgagtagtagaataagacaggggtcaatgagaaatgagaaatgaagagg |
43155069 |
T |
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| Q |
111 |
ttatgtataatgatattgctaatgacgtcgtatattatatatttctgatgtgaatgaagaagtgtaaaacatggtgatgataatgatgatgtttacatta |
210 |
Q |
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| T |
43155070 |
ttatgtataatgatattgctaatgacgtcgtatattatatatttctgatgtgaatgaagaagtgtaaaacatggtgatgataatgatgatgtttacatta |
43155169 |
T |
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| Q |
211 |
tagtgatgatcagaatgatgatgtccat |
238 |
Q |
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| T |
43155170 |
tattgatgatcagaatgatgatgtccat |
43155197 |
T |
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