View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16843_high_3 (Length: 414)
Name: NF16843_high_3
Description: NF16843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16843_high_3 |
 | |
|
| [»] scaffold0113 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 14723224 - 14722838
Alignment:
| Q |
11 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14723224 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
14723125 |
T |
|
| Q |
111 |
cttactcatcctttctaacaacaatcttctctaaagtataagagtccatccattcatcttgctcacccctcaagtggaagctttttcatctgcgtagact |
210 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14723124 |
cttactcatcctttccaacaacaatcttctctaaagta--agagtccatccattcatcttgctcacccctcaagtggaagctttttcatccgcgtagact |
14723027 |
T |
|
| Q |
211 |
tactcttgtaccgccattgtcaaaggcaacaacaaacaccttgtaaagaagatttttgaaacaatgaggtggttgaaactttattgaacctcggtctgat |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
14723026 |
tactcttgcaccgccattgtcaaaggcaccaacaaacaccttgtcaagaagatttttgaaacaaggaggtggttgaaactttattgaacctcggcctgac |
14722927 |
T |
|
| Q |
311 |
accattgttgggtcacaaggagagctcgagggatcatccatgcgttgggcccataataaccataccagtgatttggacaccaaattttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14722926 |
accattgttgggtcacaaggagagctcgagggatcatccacgcgttgggcccataataaccataccagtgatttggacaccaaattttt |
14722838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 399
Target Start/End: Original strand, 17600968 - 17601354
Alignment:
| Q |
11 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17600968 |
cagagagcaatatggttgaccattcaaagagcacatacagagttgactattggctttcaactggtagaaactataaagaaagagtccatccattcataga |
17601067 |
T |
|
| Q |
111 |
cttactcatcctttctaacaacaatcttctctaaagtataagagtccatccattcatcttgctcacccctcaagtggaagctttttcatctgcgtagact |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17601068 |
cttactcatcctttctaacaacaatcttctctaaagta--agagtccattcattcatcttgctcacccctcaagtggaagctttttcatctgtgtagact |
17601165 |
T |
|
| Q |
211 |
tactcttgtaccgccattgtcaaaggcaacaacaaacaccttgtaaagaagatttttgaaacaatgaggtggttgaaactttattgaacctcggtctgat |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
17601166 |
tactcttgcaccgccattgtcaaaggcaccaacaaacaccttgtcaagaagatttttgaaacaaggaggtggttgaaactttattgaacatcggtctgat |
17601265 |
T |
|
| Q |
311 |
accattgttgggtcacaaggagagctcgagggatcatccatgcgttgggcccataataaccataccagtgatttggacaccaaattttt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17601266 |
accattgttgggtcacaaggagagctcgagggatcatccacgcgttaggcccataataaccataccagtgatttggacaccaaattttt |
17601354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 31509598 - 31509547
Alignment:
| Q |
152 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatctgc |
203 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
31509598 |
gagtccatcaattcatcatgctcacccctcaagcggaagctctttcatctgc |
31509547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 200
Target Start/End: Original strand, 21504802 - 21504850
Alignment:
| Q |
152 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatc |
200 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| | ||||||| |
|
|
| T |
21504802 |
gagtccatcgattcatcatgctcacccctcaagtggaagttctttcatc |
21504850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 203
Target Start/End: Complemental strand, 39814 - 39763
Alignment:
| Q |
152 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatctgc |
203 |
Q |
| |
|
|||| |||| ||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
39814 |
gagttcatcaattcatcatgctcacccctcaagcggaagctctttcatctgc |
39763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 30313153 - 30313074
Alignment:
| Q |
152 |
gagtccatccattcatcttgctcacccctcaagtggaagctttttcatctgcgtagacttactcttgtaccgccattgtc |
231 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||| ||||||| ||||||| || | ||||| ||||||||||| ||||| |
|
|
| T |
30313153 |
gagtccaacaattcatcatgctcacccctcaagcggaagctctttcatccgcacacacttatacttgtaccgccgttgtc |
30313074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 40518559 - 40518519
Alignment:
| Q |
152 |
gagtccatccattcatcttgctcacccctcaagtggaagct |
192 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
40518559 |
gagtccatcaattcatcatgctcccccctcaagtggaagct |
40518519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University